Experiment set18S297 for Agrobacterium fabrum C58

Compare to:

LB_Benthi_root

200 most important genes:

  gene name fitness t score description  
Atu0030 -3.7 -2.2 phosphocarrier protein HPr compare
Atu4897 -3.2 -3.1 hypothetical protein compare
Atu8095 -3.0 -8.5 hypothetical protein compare
Atu8054 -2.6 -1.3 hypothetical protein compare
Atu0486 -2.5 -4.0 dihydroorotate dehydrogenase compare
Atu2057 -2.4 -1.6 DNA helicase II compare
Atu0777 -2.4 -1.1 hypothetical protein compare
Atu0692 -2.3 -9.3 glutathione-regulated potassium-efflux system protein compare
Atu0999 -2.1 -1.4 magnesium transport protein compare
Atu0141 -2.0 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu3299 -2.0 -3.5 hypothetical protein compare
Atu0978 -2.0 -4.9 two component response regulator compare
Atu0189 -2.0 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -1.8 -0.9 hypothetical protein compare
Atu4072 -1.7 -1.3 nodulation protein N compare
Atu2684 -1.7 -2.7 hypothetical protein compare
Atu1359 -1.7 -1.4 dnaK deletion suppressor protein compare
Atu0399 -1.6 -4.6 dihydroorotase compare
Atu0784 -1.6 -2.9 hypothetical protein compare
Atu2125 -1.6 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu4317 -1.6 -2.5 TetR family transcriptional regulator compare
Atu0690 -1.5 -2.0 hypothetical protein compare
Atu0977 -1.5 -2.5 serine protease DO-like protease compare
Atu0641 -1.5 -3.5 hypothetical protein compare
Atu8096 -1.5 -1.7 hypothetical protein compare
Atu3663 -1.5 -1.5 hypothetical protein compare
Atu1803 -1.4 -3.1 cold shock protein compare
Atu0400 -1.4 -3.0 orotate phosphoribosyltransferase compare
Atu3727 -1.4 -4.3 hypothetical protein compare
Atu1308 -1.4 -4.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0533 -1.4 -2.2 putative inhibitor of septum formation compare
Atu0923 -1.3 -4.2 hypothetical protein compare
Atu4617 -1.3 -9.3 dTDP-D-glucose-4,6-dehydratase compare
Atu2376 -1.3 -3.7 hypothetical protein compare
Atu4618 -1.3 -8.7 dTDP-rhamnose-3,5-epimerase compare
Atu0269 -1.3 -3.4 exodeoxyribonuclease VII large subunit compare
Atu1513 -1.3 -3.6 ABC excinuclease subunit A compare
Atu0298 -1.3 -4.4 orotidine 5 compare
Atu3755 -1.2 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4613 -1.2 -8.6 glycosyltransferase compare
Atu0912 -1.2 -1.3 Na+/H+ antiporter compare
Atu4615 -1.2 -6.2 glucose-1-phosphate thymidylyltransferase compare
Atu6098 -1.2 -1.1 transcriptional regulator, HTH family compare
Atu1163 -1.2 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3739 -1.2 -1.6 phosphoglycerate kinase compare
Atu2464 -1.2 -2.8 formyltetrahydrofolate deformylase compare
Atu3604 -1.2 -3.6 hypoxanthine phosphoribosyltransferase compare
Atu8138 -1.2 -1.3 hypothetical protein compare
Atu4205 -1.2 -6.8 TetR family transcriptional regulator compare
Atu8191 -1.2 -1.2 hypothetical protein compare
Atu0051 -1.2 -2.4 two component sensor kinase compare
Atu1739 -1.2 -2.3 permease compare
Atu1439 -1.1 -1.0 hypothetical protein compare
Atu8025 -1.1 -0.6 hypothetical protein compare
Atu0971 -1.1 -0.8 two component sensor kinase compare
Atu0601 -1.1 -5.4 oxidoreductase compare
Atu4614 -1.1 -5.2 glycosyltransferase compare
Atu2183 -1.1 -5.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2616 -1.1 -1.6 hypothetical protein compare
Atu3517 -1.1 -4.6 acetyltransferase compare
Atu1327 -1.1 -1.9 NADH-ubiquinone oxidoreductase compare
Atu0251 -1.0 -7.1 hypothetical protein compare
Atu2800 -1.0 -2.3 precorrin-3B C17-methyltransferase compare
Atu3014 -1.0 -1.4 hypothetical protein compare
Atu4616 -1.0 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu3249 -1.0 -3.6 septum formation inhibitor compare
Atu3311 -1.0 -6.6 phosphomannose isomerase compare
Atu0368 -1.0 -3.6 tRNA pseudouridine synthase I compare
Atu0602 -1.0 -4.2 glutamine synthetase compare
Atu3353 -1.0 -6.6 mannose-1-phosphate guanylyltransferase compare
Atu3740 -1.0 -5.8 fructose bisphosphate aldolase compare
Atu2615 -1.0 -1.7 hypothetical protein compare
Atu4187 -1.0 -1.1 tRNA-Met compare
Atu4711 -0.9 -3.9 two component sensor kinase compare
Atu3006 -0.9 -2.9 hypothetical protein compare
Atu4407 -0.9 -2.4 periplasmic nitrate reductase, NapD protein compare
Atu0572 -0.9 -1.0 hypothetical protein compare
Atu1446 -0.9 -1.6 two component response regulator compare
Atu2554 -0.9 -1.8 lysyl-tRNA synthetase compare
Atu0479 -0.9 -4.2 ABC transporter, substrate binding protein (amino acid) compare
Atu3872 -0.9 -2.6 hypothetical protein compare
Atu1904 -0.9 -1.7 transcriptional regulator compare
Atu0544 -0.9 -1.4 hypothetical protein compare
Atu1099 -0.9 -2.4 hypothetical protein compare
Atu0188 -0.9 -0.6 ABC transporter, membrane spanning protein (peptide) compare
Atu6189 -0.9 -1.0 protein secretion chaperone compare
Atu4139 -0.9 -1.5 hypothetical protein compare
Atu3469 -0.9 -1.8 phosphoglyceromutase compare
Atu1364 -0.9 -2.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1967 -0.9 -4.9 hypothetical protein compare
Atu0331 -0.9 -1.4 sigma-54 modulation protein compare
Atu0086 -0.8 -0.9 ribosome-binding factor A compare
Atu1103 -0.8 -1.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2073 -0.8 -2.1 membrane protein compare
Atu2304 -0.8 -5.0 bacteroid development protein compare
Atu0938 -0.8 -1.8 transcriptional regulator, MerR family compare
Atu2831 -0.8 -2.3 glucose inhibited division protein A compare
Atu1850 -0.8 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0190 -0.8 -0.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3115 -0.8 -2.8 TetR family transcriptional regulator compare
Atu8167 -0.8 -4.6 putative transmembrane protein compare
Atu0769 -0.8 -0.7 protoheme IX farnesyltransferase compare
Atu3015 -0.8 -4.0 hypothetical protein compare
Atu0044 -0.8 -3.2 heat shock protein hslV compare
Atu2692 -0.8 -2.6 intracellular septation protein compare
Atu3912 -0.8 -4.7 hypothetical protein compare
Atu1475 -0.7 -1.7 hypothetical protein compare
Atu2824 -0.7 -1.9 hypothetical protein compare
Atu0580 -0.7 -1.5 flagellar biosynthetic protein compare
Atu4773 -0.7 -0.7 two component response regulator compare
Atu1970 -0.7 -2.3 hypothetical protein compare
Atu2685 -0.7 -5.3 aconitate hydratase compare
Atu2052 -0.7 -1.8 hypothetical protein compare
Atu4894 -0.7 -4.3 transposase compare
Atu0388 -0.7 -3.6 two component sensor kinase compare
Atu4166 -0.7 -1.9 UDP-glucose 4-epimerase compare
Atu0237 -0.7 -2.2 hypothetical protein compare
Atu2456 -0.7 -2.3 lactoylglutathione lyase compare
Atu3169 -0.7 -2.7 sorbitol/mannitol ABC transporter permease compare
Atu1260 -0.7 -1.1 hypothetical protein compare
Atu2620 -0.7 -0.9 hypothetical protein compare
Atu1354 -0.7 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1204 -0.7 -2.8 potassium uptake protein compare
Atu4040 -0.7 -1.4 hypothetical protein compare
Atu1110 -0.7 -1.2 cytosol aminopeptidase compare
Atu2207 -0.7 -1.8 two component sensor kinase compare
Atu0029 -0.7 -2.0 S-adenosylhomocysteine hydrolase compare
Atu0135 -0.7 -1.1 uracil phosphoribosyltransferase compare
Atu0093 -0.7 -2.7 Recombination protein compare
Atu2184 -0.7 -1.8 transcriptional regulator, AsnC family compare
Atu0040 -0.7 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0062 -0.6 -3.6 transcriptional regulator, ROK family compare
Atu1774 -0.6 -1.0 ABC transporter, substrate binding protein (peptide) compare
Atu0893 -0.6 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3009 -0.6 -0.6 exopolysaccharide production protein compare
Atu0045 -0.6 -3.3 heat shock chaperone compare
Atu2442 -0.6 -0.9 hypothetical protein compare
Atu2217 -0.6 -1.9 hypothetical protein compare
Atu8177 -0.6 -1.5 hypothetical protein compare
Atu4133 -0.6 -1.4 hypothetical protein compare
Atu1307 -0.6 -2.1 dihydroorotase compare
Atu4610 -0.6 -3.5 sugar nucleotide epimerase/dehydratase compare
Atu2722 -0.6 -3.9 porin compare
Atu4641 -0.6 -2.2 LysR family transcriptional regulator compare
Atu1056 -0.6 -1.9 hypothetical protein compare
Atu3609 -0.6 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1468 -0.6 -3.0 hypothetical protein compare
Atu4199 -0.6 -3.5 TetR family transcriptional regulator compare
Atu3465 -0.6 -2.3 metallo-beta-lactamase superfamily protein compare
Atu3985 -0.6 -2.9 pyrroline-5-carboxylate reductase compare
Atu2140 -0.6 -1.1 hypothetical protein compare
Atu1836 -0.6 -1.0 hypothetical protein compare
Atu1141 -0.6 -2.2 Phosphoribosylglycinamide synthetase compare
Atu0463 -0.6 -2.0 hypothetical protein compare
Atu8117 -0.6 -1.0 hypothetical protein compare
Atu2515 -0.6 -1.9 ABC transporter, nucleotide binding/ATPase protein (dipeptide) compare
Atu2801 -0.6 -1.5 precorrin-2 C20 methyltransferase compare
Atu0689 -0.6 -3.0 ribosomal large subunit pseudouridine synthase B compare
Atu4161 -0.6 -1.3 hypothetical protein compare
Atu1467 -0.6 -1.7 hypothetical protein compare
Atu1920 -0.6 -2.3 hypothetical protein compare
Atu5047 -0.6 -2.1 hypothetical protein compare
Atu1686 -0.6 -4.3 peptidyl-prolyl cis-trans isomerse D compare
Atu0142 -0.6 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu4177 -0.6 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0941 -0.6 -0.6 hypothetical protein compare
Atu5010 -0.6 -1.7 hypothetical protein compare
Atu0036 -0.6 -0.8 hypothetical protein compare
Atu6131 -0.6 -1.7 TraR Antiactivator compare
Atu2231 -0.6 -2.0 acetyltransferase compare
Atu1628 -0.6 -1.1 hypothetical protein compare
Atu2640 -0.6 -1.5 hypothetical protein compare
Atu4882 -0.6 -1.3 hypothetical protein compare
Atu1175 -0.6 -0.8 hypothetical protein compare
Atu4713 -0.6 -1.7 hypothetical protein compare
Atu4630 -0.6 -1.0 hypothetical protein compare
Atu4756 -0.5 -2.3 hypothetical protein compare
Atu1535 -0.5 -1.3 cytochrome c oxidase, FixQ chain compare
Atu3757 -0.5 -1.0 hypothetical protein compare
Atu1258 -0.5 -1.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu1028 -0.5 -1.0 hypothetical protein compare
Atu3657 -0.5 -1.9 hypothetical protein compare
Atu1921 -0.5 -2.1 hypothetical protein compare
Atu0966 -0.5 -1.3 hypothetical protein compare
Atu0101 -0.5 -1.0 cytochrome c compare
Atu4540 -0.5 -1.2 protocatechuate 3,4-dioxygenase subunit beta compare
Atu6009 -0.5 -1.8 indole-3-lactate synthase compare
Atu3336 -0.5 -0.9 hypothetical protein compare
Atu0413 -0.5 -1.1 stress induced protein compare
Atu1853 -0.5 -1.2 hypothetical protein compare
Atu3510 -0.5 -1.5 amidohydrolase compare
Atu1722 -0.5 -1.5 hypothetical protein compare
Atu2239 -0.5 -1.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1527 -0.5 -2.2 nitrogen fixation protein FixS compare
Atu2746 -0.5 -1.2 hypothetical protein compare
Atu2083 -0.5 -1.5 DNA repair protein RecN compare
Atu2537 -0.5 -1.3 transcriptional regulator, TetR family compare
Atu8010 -0.5 -1.3 hypothetical protein compare
Atu1874 -0.5 -1.0 RecA protein compare
Atu2626 -0.5 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in lb_benthi_root experiments

For lb_benthi_root LB_Benthi_root across organisms