Experiment set18S294 for Agrobacterium fabrum C58

Compare to:

LB control

200 most important genes:

  gene name fitness t score description  
Atu4317 -3.6 -3.2 TetR family transcriptional regulator compare
Atu8095 -2.7 -9.0 hypothetical protein compare
Atu0978 -2.5 -5.9 two component response regulator compare
Atu0692 -2.3 -10.7 glutathione-regulated potassium-efflux system protein compare
Atu1803 -2.1 -5.7 cold shock protein compare
Atu0999 -2.1 -1.4 magnesium transport protein compare
Atu0331 -2.0 -3.0 sigma-54 modulation protein compare
Atu0189 -2.0 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0784 -2.0 -2.5 hypothetical protein compare
Atu1359 -2.0 -1.8 dnaK deletion suppressor protein compare
Atu1810 -1.9 -1.1 hypothetical protein compare
Atu8191 -1.8 -1.6 hypothetical protein compare
Atu1739 -1.8 -3.4 permease compare
Atu6098 -1.8 -1.7 transcriptional regulator, HTH family compare
Atu3727 -1.8 -5.7 hypothetical protein compare
Atu0030 -1.8 -2.3 phosphocarrier protein HPr compare
Atu0690 -1.8 -2.6 hypothetical protein compare
Atu4897 -1.7 -2.0 hypothetical protein compare
Atu2125 -1.7 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1513 -1.6 -4.1 ABC excinuclease subunit A compare
Atu3663 -1.6 -2.2 hypothetical protein compare
Atu1099 -1.6 -4.6 hypothetical protein compare
Atu1103 -1.4 -3.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3517 -1.3 -4.3 acetyltransferase compare
Atu1030 -1.3 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0399 -1.3 -3.8 dihydroorotase compare
Atu2684 -1.3 -2.0 hypothetical protein compare
Atu0977 -1.3 -3.1 serine protease DO-like protease compare
Atu0486 -1.3 -2.5 dihydroorotate dehydrogenase compare
Atu0400 -1.3 -3.0 orotate phosphoribosyltransferase compare
Atu1874 -1.3 -2.1 RecA protein compare
Atu0912 -1.3 -1.3 Na+/H+ antiporter compare
Atu2554 -1.3 -2.7 lysyl-tRNA synthetase compare
Atu0368 -1.3 -4.9 tRNA pseudouridine synthase I compare
Atu1056 -1.3 -4.1 hypothetical protein compare
Atu0251 -1.3 -8.4 hypothetical protein compare
Atu2057 -1.3 -1.6 DNA helicase II compare
Atu3299 -1.2 -3.4 hypothetical protein compare
Atu3008 -1.2 -1.1 hypothetical protein compare
Atu2787 -1.2 -1.5 hypothetical protein compare
Atu3739 -1.2 -1.9 phosphoglycerate kinase compare
Atu1260 -1.1 -2.0 hypothetical protein compare
Atu0269 -1.1 -3.5 exodeoxyribonuclease VII large subunit compare
Atu3469 -1.1 -1.9 phosphoglyceromutase compare
Atu5045 -1.1 -2.0 hypothetical protein compare
Atu2616 -1.1 -1.7 hypothetical protein compare
Atu0601 -1.1 -5.4 oxidoreductase compare
Atu4205 -1.1 -5.6 TetR family transcriptional regulator compare
Atu1028 -1.1 -1.4 hypothetical protein compare
Atu0602 -1.1 -5.1 glutamine synthetase compare
Atu0190 -1.1 -0.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2685 -1.0 -8.4 aconitate hydratase compare
Atu0923 -1.0 -3.1 hypothetical protein compare
Atu0044 -1.0 -5.0 heat shock protein hslV compare
Atu5164 -1.0 -1.2 type IV secretion protein AvhB3 compare
Atu1364 -1.0 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3009 -1.0 -1.1 exopolysaccharide production protein compare
Atu0142 -1.0 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu1258 -0.9 -2.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu0188 -0.9 -0.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0388 -0.9 -4.7 two component sensor kinase compare
Atu3017 -0.9 -1.4 phosphoglyceromutase compare
Atu0723 -0.9 -0.6 FAD dependent oxidoreductase compare
Atu1774 -0.9 -1.3 ABC transporter, substrate binding protein (peptide) compare
Atu2462 -0.9 -2.9 hypothetical protein compare
Atu8167 -0.9 -4.7 putative transmembrane protein compare
Atu8053 -0.9 -2.5 hypothetical protein compare
Atu3519 -0.9 -4.0 peptidyl-prolyl cis-trans isomerase compare
Atu3249 -0.8 -3.9 septum formation inhibitor compare
Atu3001 -0.8 -1.6 hypothetical protein compare
Atu5493 -0.8 -3.0 hypothetical protein compare
Atu2192 -0.8 -1.2 hypothetical protein compare
Atu2800 -0.8 -1.7 precorrin-3B C17-methyltransferase compare
Atu2304 -0.8 -5.7 bacteroid development protein compare
Atu3872 -0.8 -4.2 hypothetical protein compare
Atu1354 -0.8 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1129 -0.8 -4.2 excinuclease ABC chain C compare
Atu0777 -0.8 -0.7 hypothetical protein compare
Atu0045 -0.8 -4.7 heat shock chaperone compare
Atu0769 -0.8 -0.8 protoheme IX farnesyltransferase compare
Atu1077 -0.8 -2.1 DNA repair protein compare
Atu3248 -0.8 -3.4 cell division inhibitor compare
Atu3006 -0.8 -2.7 hypothetical protein compare
Atu0141 -0.8 -0.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0533 -0.8 -1.9 putative inhibitor of septum formation compare
Atu2799 -0.7 -2.9 precorrin-6x reductase compare
Atu2692 -0.7 -2.7 intracellular septation protein compare
Atu1223 -0.7 -1.0 hypothetical protein compare
Atu2722 -0.7 -4.6 porin compare
Atu1602 -0.7 -3.3 transcriptional activator, Crp family compare
Atu1327 -0.7 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0298 -0.7 -3.2 orotidine 5 compare
Atu1308 -0.7 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2615 -0.7 -1.5 hypothetical protein compare
Atu2710 -0.7 -1.4 hypothetical protein compare
Atu4893 -0.7 -3.5 hypothetical protein compare
Atu1952 -0.7 -1.3 hypothetical protein compare
Atu2183 -0.7 -3.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1793 -0.7 -4.3 phosphatidylcholine synthase compare
Atu0050 -0.7 -1.7 two component response regulator compare
Atu4792 -0.7 -1.3 hypothetical protein compare
Atu2052 -0.7 -1.8 hypothetical protein compare
Atu2376 -0.7 -2.8 hypothetical protein compare
Atu1163 -0.7 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6189 -0.7 -1.4 protein secretion chaperone compare
Atu3518 -0.7 -4.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2832 -0.7 -2.0 tRNA modification GTPase compare
Atu3608 -0.7 -3.1 hypothetical protein compare
Atu4540 -0.7 -1.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2555 -0.7 -1.9 L-lysine 2,3-aminomutase compare
Atu0184 -0.7 -2.5 glucokinase compare
Atu1570 -0.6 -0.7 hypothetical protein compare
Atu1536 -0.6 -3.7 cytochrome C oxidase, FixO chain compare
Atu2237 -0.6 -2.6 cytochrome c1 compare
Atu0971 -0.6 -0.8 two component sensor kinase compare
Atu0434 -0.6 -0.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3886 -0.6 -3.5 lysophospholipase compare
Atu0767 -0.6 -2.9 cytochrome c oxidase subunit II compare
Atu4618 -0.6 -4.2 dTDP-rhamnose-3,5-epimerase compare
Atu2728 -0.6 -0.9 beta (1-->2) glucan export ATP-binding protein compare
Atu2831 -0.6 -2.2 glucose inhibited division protein A compare
Atu3031 -0.6 -0.9 hypothetical protein compare
Atu3311 -0.6 -4.6 phosphomannose isomerase compare
Atu4711 -0.6 -2.3 two component sensor kinase compare
Atu2017 -0.6 -0.7 hypothetical protein compare
Atu0931 -0.6 -3.9 penicillin binding protein compare
Atu4615 -0.6 -4.0 glucose-1-phosphate thymidylyltransferase compare
Atu0926 -0.6 -2.2 hypothetical protein compare
Atu1970 -0.6 -1.8 hypothetical protein compare
Atu2793 -0.6 -2.5 cobyrinic acid a,c-diamide synthase compare
Atu5489 -0.6 -2.7 hypothetical protein compare
Atu1686 -0.6 -4.4 peptidyl-prolyl cis-trans isomerse D compare
Atu1500 -0.6 -2.5 rare lipoprotein A compare
Atu0641 -0.6 -2.0 hypothetical protein compare
Atu3763 -0.6 -0.3 hypothetical protein compare
Atu2238 -0.5 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4614 -0.5 -3.3 glycosyltransferase compare
Atu3609 -0.5 -2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1131 -0.5 -2.9 outer membrane protein compare
Atu4068 -0.5 -1.7 sarcosine oxidase delta subunit compare
Atu4452 -0.5 -2.4 hypothetical protein compare
Atu1475 -0.5 -0.7 hypothetical protein compare
Atu4217 -0.5 -0.3 TetR family transcriptional regulator compare
Atu0972 -0.5 -1.2 lipA protein compare
Atu8138 -0.5 -0.8 hypothetical protein compare
Atu5028 -0.5 -2.3 IS426 transposase compare
Atu8052 -0.5 -1.1 hypothetical protein compare
Atu3623 -0.5 -1.8 DnaJ family molecular chaperone compare
Atu3732 -0.5 -3.5 hemolysin compare
Atu8056 -0.5 -0.7 hypothetical protein compare
Atu4617 -0.5 -3.0 dTDP-D-glucose-4,6-dehydratase compare
Atu0479 -0.5 -2.8 ABC transporter, substrate binding protein (amino acid) compare
Atu0031 -0.5 -0.5 PTS system, IIA component compare
Atu0499 -0.5 -2.7 hypothetical protein compare
Atu2073 -0.5 -1.4 membrane protein compare
Atu0759 -0.5 -3.2 hypothetical protein compare
Atu4391 -0.5 -1.4 nitric oxide reductase NorE protein compare
Atu8133 -0.5 -1.6 hypothetical protein compare
Atu1904 -0.5 -2.7 transcriptional regulator compare
Atu4616 -0.5 -0.5 dTDP-4-dehydrorhamnose reductase compare
Atu1683 -0.5 -0.8 hypothetical protein compare
Atu1921 -0.5 -2.2 hypothetical protein compare
Atu1373 -0.5 -2.7 hypothetical protein compare
Atu2117 -0.5 -2.3 lytic murein transglycosylase compare
Atu1307 -0.5 -2.4 dihydroorotase compare
Atu2394 -0.5 -1.9 Regulator of Biofilm formation, Fnr Family compare
Atu3898 -0.5 -2.4 DeoR family transcriptional regulator compare
Atu0894 -0.5 -0.8 ABC transporter, membrane spanning protein compare
Atu4502 -0.5 -2.1 cobalamin synthesis protein compare
Atu0749 -0.5 -1.3 biotin synthesis BioY protein compare
Atu1920 -0.5 -1.8 hypothetical protein compare
Atu0689 -0.5 -2.9 ribosomal large subunit pseudouridine synthase B compare
Atu1039 -0.5 -1.3 DNA repair protein RecO compare
Atu2746 -0.5 -1.9 hypothetical protein compare
Atu0920 -0.5 -2.0 hypothetical protein compare
Atu8117 -0.5 -1.2 hypothetical protein compare
Atu3353 -0.5 -3.0 mannose-1-phosphate guanylyltransferase compare
Atu8118 -0.5 -1.8 putative universal stress protein compare
Atu3560 -0.4 -1.6 glycosyltransferase compare
Atu1546 -0.4 -2.0 transcriptional regulator, MerR family compare
Atu2148 -0.4 -2.2 ABC transporter, membrane spanning protein compare
Atu0361 -0.4 -0.8 transcriptional regulator compare
Atu3593 -0.4 -3.2 hypothetical protein compare
Atu8041 -0.4 -0.9 hypothetical protein compare
Atu4894 -0.4 -2.8 transposase compare
Atu2281 -0.4 -1.9 ABC transporter, substrate binding protein (proline/glycine betaine) compare
Atu3688 -0.4 -1.7 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu3884 -0.4 -2.6 hypothetical protein compare
Atu2824 -0.4 -1.0 hypothetical protein compare
Atu8061 -0.4 -2.6 hypothetical protein compare
Atu2184 -0.4 -1.5 transcriptional regulator, AsnC family compare
Atu3395 -0.4 -2.7 iron (III ABC transporter permease ABC transporter permease compare
Atu1398 -0.4 -2.0 ABC transporter, membrane spanning protein (amino acid) compare
Atu3110 -0.4 -2.1 hypothetical protein compare
Atu2077 -0.4 -1.5 DNA polymerase III, epsilon subunit compare
Atu8145 -0.4 -1.7 hypothetical protein compare
Atu2123 -0.4 -2.3 methylenetetrahydrofolate reductase compare
Atu6104 -0.4 -1.5 conserved hypothetical protein compare
Atu2043 -0.4 -2.5 htrA family protein compare
Atu3328 -0.4 -1.2 aldehyde dehydrogenase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in lb control experiments