Experiment set18IT096 for Pseudomonas putida KT2440

Compare to:

Growth at pH8 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_1079 -7.0 -4.8 Ornithine carbamoyltransferase compare
PP_1898 -7.0 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0293 -6.5 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -6.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1986 -5.9 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_0184 -5.8 -4.0 Argininosuccinate lyase compare
PP_3505 -5.7 -2.3 conserved protein of unknown function compare
PP_0083 -5.7 -3.9 tryptophan synthase beta chain compare
PP_4678 -5.7 -14.8 Ketol-acid reductoisomerase compare
PP_1568 -5.6 -1.3 conserved protein of unknown function compare
PP_5348 -5.5 -10.8 Transcriptional regulator, LysR family compare
PP_4364 -5.2 -4.8 putative Anti-sigma F factor antagonist compare
PP_5155 -5.1 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4680 -5.1 -13.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -5.0 -6.8 Branched-chain-amino-acid aminotransferase compare
PP_5014 -4.8 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -4.8 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -4.7 -7.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2371 -4.7 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -4.7 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_0082 -4.6 -7.1 tryptophan synthase alpha chain compare
PP_5347 -4.6 -11.0 pyruvate carboxylase subunit A compare
PP_5097 -4.6 -10.3 homoserine O-acetyltransferase compare
PP_2168 -4.5 -8.7 Transaldolase compare
PP_4797 -4.5 -1.4 conserved protein of unknown function compare
PP_5128 -4.5 -7.2 Dihydroxy-acid dehydratase compare
PP_5098 -4.4 -6.6 methionine biosynthesis protein MetW compare
PP_4679 -4.3 -5.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -4.3 -5.8 Nitrogen regulation protein NR(I) compare
PP_5346 -4.2 -7.7 pyruvate carboxylase subunit B compare
PP_0001 -4.2 -2.0 probable chromosome-partitioning protein compare
PP_5350 -4.2 -2.9 Transcriptional regulator, RpiR family compare
PP_0966 -4.1 -7.0 Histidinol dehydrogenase compare
PP_1215 -4.0 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4804 -4.0 -2.8 RlpA-like lipoprotein compare
PP_2402 -4.0 -2.5 putative Sensor histidine kinase compare
PP_1995 -4.0 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1025 -3.8 -9.0 2-isopropylmalate synthase compare
PP_5456 -3.7 -1.2 conserved protein of unknown function compare
PP_0513 -3.7 -2.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1985 -3.7 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_5185 -3.6 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -3.6 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3999 -3.6 -9.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1088 -3.5 -7.9 Argininosuccinate synthase compare
PP_2370 -3.4 -3.3 conserved protein of unknown function compare
PP_1022 -3.3 -5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0422 -3.3 -2.7 Indole-3-glycerol phosphate synthase compare
PP_3048 -3.3 -2.3 conserved protein of unknown function compare
PP_0417 -3.3 -10.1 Anthranilate synthase component 1 compare
PP_0420 -3.2 -6.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1237 -3.2 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4699 -3.1 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0362 -3.1 -7.3 Biotin synthase compare
PP_2327 -3.1 -4.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4296 -3.1 -1.7 conserved exported protein of unknown function compare
PP_2510 -3.1 -1.6 conserved protein of unknown function compare
PP_4909 -3.0 -5.5 phosphoserine phosphatase compare
PP_0421 -3.0 -5.2 Anthranilate phosphoribosyltransferase compare
PP_0965 -3.0 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4984 -3.0 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1988 -3.0 -4.4 3-isopropylmalate dehydrogenase compare
PP_5303 -3.0 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5027 -2.9 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4828 -2.9 -1.3 Precorrin-8X methylmutase compare
PP_5217 -2.8 -7.5 Polyphosphate kinase compare
PP_3837 -2.8 -2.6 inner membrane protein of unknown function compare
PP_5253 -2.8 -2.5 Arylesterase compare
PP_0363 -2.8 -5.8 8-amino-7-oxononanoate synthase compare
PP_2328 -2.8 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_4268 -2.7 -1.5 nucleoid-associated broad specificity regulator compare
PP_1303 -2.7 -4.5 Sulfate adenylyltransferase subunit 2 compare
PP_1672 -2.5 -2.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4829 -2.5 -2.4 putative precorrin-3B synthase compare
PP_5289 -2.5 -2.7 Acetylglutamate kinase compare
PP_1729 -2.5 -1.4 conserved protein of unknown function compare
PP_1186 -2.5 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_2070 -2.4 -1.7 Transcriptional regulator, AraC family compare
PP_2414 -2.3 -2.3 conserved exported protein of unknown function compare
PP_5095 -2.3 -1.1 pyrroline-5-carboxylate reductase compare
PP_3315 -2.3 -1.8 conserved membrane protein of unknown function compare
PP_0364 -2.3 -3.4 pimeloyl-[acp] methyl ester esterase compare
PP_4785 -2.2 -3.6 conserved exported protein of unknown function compare
PP_4890 -2.2 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3508 -2.1 -2.1 Protein CobW compare
PP_0164 -2.1 -3.7 conserved protein of unknown function compare
PP_2433 -2.1 -1.6 conserved protein of unknown function compare
PP_2121 -2.1 -1.7 putative Lipoprotein compare
PP_5331 -2.0 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4994 -2.0 -2.4 conserved protein of unknown function compare
PP_1362 -2.0 -2.7 pyruvate kinase II compare
PP_1231 -2.0 -2.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2999 -2.0 -1.3 Glyoxalase family protein compare
PP_5453 -2.0 -1.1 conserved protein of unknown function compare
PP_0393 -1.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4591 -1.9 -2.7 Ribonuclease D compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1664 -1.9 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1020 -1.9 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_0274 -1.9 -1.0 putative transcriptional regulator containing HTH domain compare
PP_1503 -1.9 -1.5 conserved protein of unknown function compare
PP_0365 -1.9 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4891 -1.9 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4895 -1.9 -1.3 tRNA dimethylallyltransferase compare
PP_3102 -1.9 -2.8 conserved protein of unknown function compare
PP_2177 -1.8 -2.4 putative transcriptional regulator compare
PP_1679 -1.8 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4555 -1.8 -2.4 conserved protein of unknown function compare
PP_4126 -1.8 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_0291 -1.8 -1.7 conserved protein of unknown function compare
PP_4977 -1.8 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_1629 -1.8 -3.7 Protein RecA compare
PP_5008 -1.8 -1.1 Poly granule-associated protein compare
PP_2087 -1.7 -2.0 CmpX protein compare
PP_5073 -1.7 -1.1 conserved exported protein of unknown function compare
PP_2302 -1.7 -3.4 DNA-binding, ATP-dependent protease compare
PP_2127 -1.7 -2.5 Sensor histidine kinase compare
PP_3806 -1.7 -1.1 Hydrolase, isochorismatase family compare
PP_3532 -1.6 -1.5 Transcriptional regulator, AsnC family compare
PP_0787 -1.6 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4120 -1.6 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_2844 -1.6 -2.7 Urease subunit beta compare
PP_4018 -1.6 -1.9 Acetyltransferase, GNAT family compare
PP_0781 -1.6 -0.8 conserved protein of unknown function compare
PP_1468 -1.6 -0.8 Tyrosine recombinase XerD compare
PP_4826 -1.6 -2.7 Precorrin-3B C17-methyltransferase compare
PP_4824 -1.6 -4.1 Sensor histidine kinase/response regulator compare
PP_2442 -1.6 -1.4 conserved protein of unknown function, DUF480 family compare
PP_1876 -1.6 -1.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0719 -1.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.6 -1.0 queuine tRNA-ribosyltransferase compare
PP_0261 -1.6 -2.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4722 -1.6 -2.2 Transcription elongation factor GreA compare
PP_3596 -1.5 -2.8 D-lysine oxidase compare
PP_3507 -1.5 -5.8 Aerobic cobaltochelatase subunit CobN compare
PP_1571 -1.5 -1.2 conserved protein of unknown function compare
PP_1609 -1.5 -1.6 conserved protein of unknown function compare
PP_3035 -1.5 -1.5 conserved protein of unknown function compare
PP_1217 -1.5 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3064 -1.5 -1.8 Phage tail protein compare
PP_4964 -1.5 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0250 -1.5 -1.7 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2378 -1.5 -1.9 Fe/S biogenesis protein NfuA compare
PP_4831 -1.5 -2.7 putative cobalt-precorrin-6A synthase compare
PP_3539 -1.5 -1.5 putative Transcriptional regulator compare
PP_4273 -1.5 -0.5 Transcriptional regulator, MerR family compare
PP_1128 -1.5 -2.2 OmpA family protein compare
PP_4480 -1.4 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_1676 -1.4 -2.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4782 -1.4 -2.4 Phosphomethylpyrimidine kinase compare
PP_3034 -1.4 -1.6 putative Regulator protein compare
PP_2337 -1.4 -1.4 aconitate isomerase compare
PP_1304 -1.4 -3.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3726 -1.4 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_0679 -1.4 -2.4 conserved exported protein of unknown function compare
PP_0025 -1.4 -0.9 hypothetical protein compare
PP_4754 -1.4 -2.9 Transcriptional regulator, TetR family compare
PP_4045 -1.4 -1.8 conserved protein of unknown function compare
PP_1926 -1.4 -1.4 putative phosphotyrosine-protein phosphatase compare
PP_4131 -1.3 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_1675 -1.3 -3.0 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5317 -1.3 -1.8 Probable chorismate pyruvate-lyase compare
PP_4356 -1.3 -1.7 Flagellar protein FliO compare
PP_2820 -1.3 -1.7 HTH-type transcriptional regulator nfxB compare
PP_2404 -1.3 -2.0 conserved exported protein of unknown function compare
PP_2390 -1.3 -4.1 Transcriptional regulator, LysR family compare
PP_1757 -1.3 -1.9 DNA-binding transcriptional dual regulator compare
PP_3051 -1.3 -1.2 Pyocin R2_PP, tail spike protein compare
PP_3398 -1.3 -1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1678 -1.3 -1.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4556 -1.3 -1.5 conserved protein of unknown function compare
PP_2073 -1.3 -1.4 Acetyltransferase, GNAT family compare
PP_1009 -1.3 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0064 -1.3 -1.9 conserved protein of unknown function compare
PP_0366 -1.3 -2.4 dethiobiotin synthetase compare
PP_1598 -1.3 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_2633 -1.3 -1.0 conserved protein of unknown function compare
PP_1261 -1.3 -1.6 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5015 -1.2 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2101 -1.2 -2.6 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_0789 -1.2 -2.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1397 -1.2 -1.2 conserved protein of unknown function compare
PP_5507 -1.2 -1.6 protein of unknown function compare
PP_4532 -1.2 -0.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1048 -1.2 -1.1 putative protein secretion protein for export compare
PP_4897 -1.2 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PP_3056 -1.2 -1.9 putative Pyocin R2_PP, tail fiber protein compare
PP_5644 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_1548 -1.2 -1.1 conserved protein of unknown function compare
PP_2107 -1.2 -0.6 conserved protein of unknown function compare
PP_4479 -1.2 -1.5 arginine N-succinyltransferase, subunit beta compare
PP_0065 -1.2 -1.3 NAD-binding component of TrK potassium transporter compare
PP_3179 -1.1 -1.9 Transcriptional regulator, LysR family compare
PP_2375 -1.1 -4.2 cobalamin-dependent methionine synthase compare
PP_4546 -1.1 -2.3 ATP-dependent helicase HrpA compare
PP_5721 -1.1 -2.0 conserved protein of unknown function compare
PP_5621 -1.1 -0.8 protein of unknown function compare
PP_4362 -1.1 -1.2 conserved protein of unknown function compare
PP_3434 -1.1 -1.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms