Experiment set18IT093 for Pseudomonas putida KT2440

Compare to:

Growth at pH7 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_5202 -7.5 -2.6 putative cell division protein compare
PP_3048 -7.5 -2.6 conserved protein of unknown function compare
PP_1513 -7.1 -2.4 Ribosomal RNA small subunit methyltransferase J compare
PP_1454 -6.9 -3.1 conserved protein of unknown function compare
PP_2718 -6.7 -2.3 arsenic resistance transcriptional regulator compare
PP_2972 -6.6 -2.3 conserved protein of unknown function compare
PP_3874 -6.5 -2.6 conserved protein of unknown function compare
PP_0293 -6.5 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2253 -6.4 -2.2 Transcriptional regulator, GntR family compare
PP_1986 -5.9 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_3902 -5.8 -2.6 conserved protein of unknown function compare
PP_3840 -5.8 -1.2 conserved protein of unknown function compare
PP_0083 -5.7 -4.0 tryptophan synthase beta chain compare
PP_2370 -5.7 -2.8 conserved protein of unknown function compare
PP_5289 -5.6 -3.4 Acetylglutamate kinase compare
PP_0967 -5.6 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5303 -5.6 -6.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5225 -5.5 -1.1 frataxin compare
PP_2001 -5.5 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4054 -5.4 -1.5 conserved protein of unknown function compare
PP_0232 -5.4 -1.1 ATP-binding taurine transporter subunit compare
PP_3365 -5.3 -1.1 Acetolactate synthase compare
PP_5007 -5.3 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0801 -5.1 -1.0 conserved exported protein of unknown function compare
PP_4943 -5.0 -2.2 putative Glycosyl transferase compare
PP_0292 -4.8 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4271 -4.7 -0.9 conserved protein of unknown function compare
PP_4073 -4.7 -2.2 conserved exported protein of unknown function compare
PP_0725 -4.7 -6.4 conserved hypothetical TPR repeat protein compare
PP_0593 -4.7 -0.9 putative ribosome-binding factor compare
PP_4296 -4.6 -1.3 conserved exported protein of unknown function compare
PP_5098 -4.5 -5.5 methionine biosynthesis protein MetW compare
PP_1988 -4.4 -6.4 3-isopropylmalate dehydrogenase compare
PP_2581 -4.4 -1.2 conserved protein of unknown function compare
PP_2633 -4.4 -1.2 conserved protein of unknown function compare
PP_0422 -4.4 -4.0 Indole-3-glycerol phosphate synthase compare
PP_4994 -4.4 -4.3 conserved protein of unknown function compare
PP_t10 -4.3 -1.2 tRNA-Pro compare
PP_1672 -4.3 -5.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4268 -4.3 -1.2 nucleoid-associated broad specificity regulator compare
PP_5097 -4.2 -8.9 homoserine O-acetyltransferase compare
PP_3946 -4.2 -1.2 HTH-type transcriptional repressor NicR compare
PP_4262 -4.2 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1022 -4.2 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1898 -4.1 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5008 -4.1 -1.2 Poly granule-associated protein compare
PP_3511 -4.1 -5.9 Branched-chain-amino-acid aminotransferase compare
PP_0363 -4.1 -8.3 8-amino-7-oxononanoate synthase compare
PP_4247 -4.1 -1.1 Exonuclease compare
PP_5346 -4.0 -6.9 pyruvate carboxylase subunit B compare
PP_0003 -4.0 -3.7 16S RNA methyltransferase compare
PP_0888 -4.0 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_5140 -4.0 -3.1 Transcriptional regulator, MerR family compare
PP_5348 -4.0 -6.9 Transcriptional regulator, LysR family compare
PP_1055 -3.9 -1.1 Type II secretion pathway protein GspN compare
PP_0289 -3.8 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5456 -3.8 -1.1 conserved protein of unknown function compare
PP_1788 -3.8 -2.1 conserved protein of unknown function compare
PP_4678 -3.7 -8.1 Ketol-acid reductoisomerase compare
PP_1677 -3.7 -4.4 Adenosyl-cobyric acid synthase compare
PP_0420 -3.7 -5.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5155 -3.7 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -3.7 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -3.5 -6.8 phosphoserine phosphatase compare
PP_3726 -3.5 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_4131 -3.5 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_4696 -3.4 -5.1 Nitrogen regulation protein NR(I) compare
PP_4707 -3.4 -1.8 OsmY-related protein compare
PP_4726 -3.4 -2.5 Chaperone protein DnaJ compare
PP_5350 -3.4 -4.2 Transcriptional regulator, RpiR family compare
PP_4364 -3.4 -2.9 putative Anti-sigma F factor antagonist compare
PP_4555 -3.3 -2.6 conserved protein of unknown function compare
PP_2168 -3.3 -6.0 Transaldolase compare
PP_0417 -3.3 -9.3 Anthranilate synthase component 1 compare
PP_1062 -3.2 -2.1 MutT/nudix family protein compare
PP_5128 -3.2 -5.0 Dihydroxy-acid dehydratase compare
PP_4680 -3.2 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3824 -3.2 -2.4 conserved exported protein of unknown function compare
PP_1237 -3.2 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0965 -3.2 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4785 -3.1 -3.6 conserved exported protein of unknown function compare
PP_5748 -3.1 -0.9 cytochrome c heme lyase subunit compare
PP_0025 -3.1 -1.1 hypothetical protein compare
PP_5347 -3.1 -6.0 pyruvate carboxylase subunit A compare
PP_2328 -3.1 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_4874 -3.0 -1.2 50S ribosomal protein L9 compare
PP_3714 -3.0 -2.9 Muconolactone Delta-isomerase compare
PP_0966 -3.0 -5.2 Histidinol dehydrogenase compare
PP_1673 -3.0 -4.6 cobyrinate a,c-diamide synthase compare
PP_2371 -3.0 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0153 -2.9 -1.5 hypothetical protein compare
PP_4870 -2.9 -2.4 Azurin compare
PP_4984 -2.9 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1362 -2.8 -3.5 pyruvate kinase II compare
PP_3417 -2.7 -3.7 D-gluconate transporter compare
PP_4804 -2.7 -3.2 RlpA-like lipoprotein compare
PP_4480 -2.7 -6.5 arginine N-succinyltransferase, subunit alpha compare
PP_5185 -2.7 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1025 -2.7 -6.8 2-isopropylmalate synthase compare
PP_1736 -2.6 -1.8 conserved protein of unknown function compare
PP_2388 -2.6 -2.4 Transporter, LysE family compare
PP_4964 -2.6 -4.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0290 -2.6 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0775 -2.5 -2.1 conserved protein of unknown function compare
PP_4890 -2.5 -2.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_2302 -2.5 -4.8 DNA-binding, ATP-dependent protease compare
PP_0362 -2.4 -5.8 Biotin synthase compare
PP_5537 -2.4 -1.7 conserved membrane protein of unknown function compare
PP_2309 -2.4 -1.1 conserved protein of unknown function compare
PP_4449 -2.4 -2.1 conserved protein of unknown function compare
PP_5095 -2.4 -0.9 pyrroline-5-carboxylate reductase compare
PP_3505 -2.4 -1.3 conserved protein of unknown function compare
PP_4829 -2.4 -1.3 putative precorrin-3B synthase compare
PP_3014 -2.3 -2.0 conserved exported protein of unknown function compare
PP_3341 -2.3 -2.0 nickel-responsive regulator compare
PP_1079 -2.3 -2.4 Ornithine carbamoyltransferase compare
PP_5324 -2.3 -1.2 Response regulator compare
PP_2880 -2.3 -2.0 Transcriptional regulator, TetR family compare
PP_2681 -2.3 -1.5 coenzyme PQQ synthesis protein D compare
PP_0421 -2.3 -3.8 Anthranilate phosphoribosyltransferase compare
PP_3064 -2.2 -1.4 Phage tail protein compare
PP_1001 -2.2 -2.9 arginine deiminase compare
PP_1038 -2.2 -1.1 conserved protein of unknown function compare
PP_3804 -2.2 -2.8 conserved exported protein of unknown function compare
PP_3098 -2.2 -0.9 conserved protein of unknown function compare
PP_0880 -2.1 -2.5 dipeptide ABC transporter - putative membrane subunit compare
PP_t12 -2.1 -0.8 tRNA-Thr compare
PP_2088 -2.1 -1.3 RNA polymerase sigma factor SigX compare
PP_0787 -2.1 -1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4787 -2.1 -1.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5156 -2.1 -1.7 conserved exported protein of unknown function compare
PP_5217 -2.1 -5.1 Polyphosphate kinase compare
PP_5338 -2.1 -2.2 aspartate ammonia-lyase compare
PP_0760 -2.1 -1.8 conserved membrane protein of unknown function compare
PP_0366 -2.1 -2.2 dethiobiotin synthetase compare
PP_0184 -2.1 -2.9 Argininosuccinate lyase compare
PP_1088 -2.1 -5.0 Argininosuccinate synthase compare
PP_5SB -2.0 -1.0 5S ribosomal RNA compare
PP_2978 -2.0 -2.6 conserved protein of unknown function compare
PP_3186 -2.0 -4.0 putative Transcriptional activator compare
PP_5604 -2.0 -1.0 putative subtilisin-like serine protease compare
PP_4124 -2.0 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_3105 -2.0 -1.1 conserved membrane protein of unknown function compare
PP_5619 -2.0 -1.4 protein of unknown function compare
PP_1020 -2.0 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_1995 -2.0 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1783 -2.0 -1.2 dTDP-glucose pyrophosphorylase compare
PP_4679 -1.9 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2932 -1.9 -3.7 Amidase family protein compare
PP_3020 -1.9 -1.3 putative Serine/threonine protein phosphatase compare
PP_4952 -1.9 -0.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4546 -1.9 -4.0 ATP-dependent helicase HrpA compare
PP_2378 -1.9 -2.0 Fe/S biogenesis protein NfuA compare
PP_0846 -1.9 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_t13 -1.9 -1.3 tRNA-Lys compare
PP_2336 -1.9 -3.9 aconitate hydratase 1 compare
PP_2337 -1.9 -2.1 aconitate isomerase compare
PP_0393 -1.9 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_t57 -1.9 -3.0 tRNA-Arg compare
PP_1999 -1.9 -1.1 membrane protein required for colicin V production compare
PP_3597 -1.9 -2.4 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_0754 -1.8 -2.2 conserved protein of unknown function compare
PP_4529 -1.8 -1.0 conserved protein of unknown function compare
PP_2074 -1.8 -2.0 Transcriptional regulator, LysR family compare
PP_0092 -1.8 -1.6 putative lipoprotein compare
PP_0291 -1.8 -1.7 conserved protein of unknown function compare
PP_t29 -1.8 -1.1 tRNA-Ala compare
PP_5106 -1.8 -1.8 conserved inner membrane protein compare
PP_4120 -1.8 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1185 -1.8 -2.7 Outer membrane protein H1 compare
PP_5075 -1.7 -4.7 glutamate synthase (NADPH) beta subunit compare
PP_3460 -1.7 -1.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4891 -1.7 -2.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3672 -1.7 -1.6 conserved protein of unknown function compare
PP_3938 -1.7 -1.4 conserved protein of unknown function compare
PP_0365 -1.7 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2144 -1.7 -2.5 Transcriptional regulator, TetR family compare
PP_4520 -1.7 -2.2 conserved protein of unknown function compare
PP_4338 -1.7 -3.3 Chemotaxis histidine kinase CheA compare
PP_4989 -1.7 -2.4 Protein PilJ compare
PP_4988 -1.7 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4792 -1.7 -1.0 conserved exported protein of unknown function compare
PP_5203 -1.7 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_0194 -1.7 -1.8 Transcriptional regulatory protein AlgP compare
PP_0278 -1.7 -1.8 conserved protein of unknown function compare
PP_4332 -1.7 -1.8 Chemotaxis protein CheW compare
PP_0699 -1.6 -2.1 Transporter, LysE family compare
PP_5014 -1.6 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1178 -1.6 -0.9 conserved protein of unknown function compare
PP_1589 -1.6 -4.0 uridylyltransferase compare
PP_0352 -1.6 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2070 -1.6 -1.2 Transcriptional regulator, AraC family compare
PP_2433 -1.6 -1.4 conserved protein of unknown function compare
PP_0850 -1.6 -2.3 Dual-specificity RNA methyltransferase RlmN compare
PP_0719 -1.6 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0364 -1.5 -2.7 pimeloyl-[acp] methyl ester esterase compare
PP_0833 -1.5 -0.8 queuine tRNA-ribosyltransferase compare
PP_1943 -1.5 -2.1 formyltetrahydrofolate deformylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms