Experiment set18IT091 for Pseudomonas putida KT2440

Compare to:

Growth at pH7 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_1079 -7.2 -5.0 Ornithine carbamoyltransferase compare
PP_5027 -7.1 -2.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5303 -6.9 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0293 -6.7 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2087 -5.9 -3.3 CmpX protein compare
PP_1568 -5.7 -1.2 conserved protein of unknown function compare
PP_5346 -5.6 -10.0 pyruvate carboxylase subunit B compare
PP_5289 -5.4 -4.7 Acetylglutamate kinase compare
PP_3447 -5.2 -1.1 conserved membrane protein of unknown function compare
PP_1985 -5.0 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0276 -4.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4271 -4.8 -1.0 conserved protein of unknown function compare
PP_5098 -4.8 -6.9 methionine biosynthesis protein MetW compare
PP_2510 -4.7 -1.4 conserved protein of unknown function compare
PP_1995 -4.7 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -4.6 -11.5 Ketol-acid reductoisomerase compare
PP_0082 -4.4 -5.9 tryptophan synthase alpha chain compare
PP_2328 -4.4 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_1654 -4.3 -3.0 cysteine synthase B compare
PP_0292 -4.3 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4804 -4.2 -2.9 RlpA-like lipoprotein compare
PP_1215 -4.2 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_3999 -4.1 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5347 -4.0 -8.4 pyruvate carboxylase subunit A compare
PP_2388 -3.9 -2.7 Transporter, LysE family compare
PP_0422 -3.9 -3.9 Indole-3-glycerol phosphate synthase compare
PP_5202 -3.8 -2.0 putative cell division protein compare
PP_4994 -3.7 -3.8 conserved protein of unknown function compare
PP_2504 -3.7 -2.0 putative tautomerase K2 compare
PP_1988 -3.7 -5.7 3-isopropylmalate dehydrogenase compare
PP_0083 -3.7 -6.3 tryptophan synthase beta chain compare
PP_5185 -3.6 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -3.6 -5.0 Branched-chain-amino-acid aminotransferase compare
PP_0787 -3.6 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5128 -3.6 -5.0 Dihydroxy-acid dehydratase compare
PP_5097 -3.4 -8.0 homoserine O-acetyltransferase compare
PP_1237 -3.3 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4126 -3.3 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_0164 -3.1 -6.0 conserved protein of unknown function compare
PP_1912 -3.1 -4.8 Phosphate acyltransferase compare
PP_5348 -3.1 -5.0 Transcriptional regulator, LysR family compare
PP_2378 -3.1 -3.6 Fe/S biogenesis protein NfuA compare
PP_4909 -3.1 -6.5 phosphoserine phosphatase compare
PP_4680 -3.1 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -3.1 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -3.0 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5201 -3.0 -3.0 conserved protein of unknown function, UPF0149 family compare
PP_4364 -2.9 -2.9 putative Anti-sigma F factor antagonist compare
PP_2402 -2.8 -2.6 putative Sensor histidine kinase compare
PP_4787 -2.8 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0959 -2.8 -2.0 phospholipid ABC transporter compare
PP_0184 -2.8 -4.3 Argininosuccinate lyase compare
PP_0566 -2.7 -1.1 translation-related factor compare
PP_1208 -2.7 -1.7 conserved protein of unknown function, SlyX family compare
PP_2001 -2.7 -5.4 O-succinylhomoserine sulfhydrylase compare
PP_4263 -2.7 -3.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0967 -2.7 -4.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -2.7 -5.7 Histidinol dehydrogenase compare
PP_2168 -2.7 -5.4 Transaldolase compare
PP_1088 -2.6 -6.3 Argininosuccinate synthase compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_0417 -2.6 -7.7 Anthranilate synthase component 1 compare
PP_4829 -2.6 -2.0 putative precorrin-3B synthase compare
PP_4696 -2.6 -3.4 Nitrogen regulation protein NR(I) compare
PP_3411 -2.6 -1.6 conserved protein of unknown function compare
PP_5095 -2.5 -1.0 pyrroline-5-carboxylate reductase compare
PP_4964 -2.4 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4679 -2.4 -2.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2820 -2.4 -3.2 HTH-type transcriptional regulator nfxB compare
PP_5225 -2.4 -1.2 frataxin compare
PP_0195 -2.4 -1.9 conserved protein of unknown function compare
PP_0420 -2.4 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0513 -2.4 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1672 -2.4 -3.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0965 -2.4 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0366 -2.4 -2.9 dethiobiotin synthetase compare
PP_1055 -2.3 -1.3 Type II secretion pathway protein GspN compare
PP_1986 -2.3 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_1353 -2.3 -2.9 conserved membrane protein of unknown function compare
PP_4937 -2.3 -2.7 toluene tolerance protein compare
PP_4792 -2.3 -1.6 conserved exported protein of unknown function compare
PP_3505 -2.2 -1.8 conserved protein of unknown function compare
PP_5448 -2.2 -3.1 conserved protein of unknown function compare
PP_4890 -2.2 -2.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0362 -2.2 -5.5 Biotin synthase compare
PP_5313 -2.2 -2.1 DNA-binding protein HU-alpha compare
PP_1025 -2.2 -5.7 2-isopropylmalate synthase compare
PP_2370 -2.2 -1.9 conserved protein of unknown function compare
PP_2302 -2.1 -4.9 DNA-binding, ATP-dependent protease compare
PP_0365 -2.1 -4.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1783 -2.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_5533 -2.1 -1.4 conserved protein of unknown function compare
PP_1676 -2.1 -3.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0289 -2.1 -3.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0122 -2.1 -1.9 conserved exported protein of unknown function compare
PP_1362 -2.1 -2.5 pyruvate kinase II compare
PP_4989 -2.0 -3.2 Protein PilJ compare
PP_0900 -2.0 -1.5 PAP2 family protein compare
PP_5155 -1.9 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4785 -1.9 -4.1 conserved exported protein of unknown function compare
PP_5217 -1.9 -5.1 Polyphosphate kinase compare
PP_0363 -1.9 -5.0 8-amino-7-oxononanoate synthase compare
PP_0962 -1.9 -1.5 toluene-tolerance protein compare
PP_0916 -1.9 -2.1 Amino acid transporter LysE compare
PP_2622 -1.8 -1.3 conserved protein of unknown function compare
PP_0364 -1.8 -2.9 pimeloyl-[acp] methyl ester esterase compare
PP_2899 -1.8 -1.0 conserved exported protein of unknown function compare
PP_0007 -1.8 -1.5 conserved hypothetical protein compare
PP_5203 -1.8 -3.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_5350 -1.8 -2.5 Transcriptional regulator, RpiR family compare
PP_4977 -1.8 -4.5 5,10-methylenetetrahydrofolate reductase compare
PP_2646 -1.8 -2.9 conserved protein of unknown function compare
PP_4131 -1.8 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_0819 -1.8 -2.4 conserved ferredoxin-like protein of unknown function compare
PP_1898 -1.8 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4942 -1.8 -2.3 conserved protein of unknown function compare
PP_2526 -1.8 -1.1 conserved membrane protein of unknown function compare
PP_3891 -1.8 -1.3 conserved protein of unknown function compare
PP_0291 -1.7 -2.1 conserved protein of unknown function compare
PP_0719 -1.7 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3314 -1.7 -2.1 Heat shock protein, HSP20 family compare
PP_4273 -1.7 -0.6 Transcriptional regulator, MerR family compare
PP_0065 -1.7 -2.0 NAD-binding component of TrK potassium transporter compare
PP_4782 -1.6 -2.6 Phosphomethylpyrimidine kinase compare
PP_1824 -1.6 -1.2 Smr domain protein compare
PP_0421 -1.6 -3.4 Anthranilate phosphoribosyltransferase compare
PP_0381 -1.6 -3.5 Coenzyme PQQ synthesis protein F compare
PP_0958 -1.6 -3.6 phospholipid ABC transporter ATP-binding subunit compare
PP_4848 -1.6 -1.1 Curved DNA-binding protein compare
PP_3762 -1.6 -1.5 Response regulator compare
PP_1231 -1.6 -3.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1892 -1.6 -1.0 conserved protein of unknown function compare
PP_5310 -1.6 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_2145 -1.6 -1.7 beta-N-acetylglucosaminidase compare
PP_4482 -1.6 -2.0 Transcriptional regulator, AraC family compare
PP_4699 -1.6 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2336 -1.6 -3.0 aconitate hydratase 1 compare
PP_3506 -1.6 -2.1 Magnesium chelatase, subunit ChII compare
PP_4546 -1.5 -3.3 ATP-dependent helicase HrpA compare
PP_4332 -1.5 -1.8 Chemotaxis protein CheW compare
PP_3880 -1.5 -1.2 conserved exported protein of unknown function compare
PP_4984 -1.5 -3.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1489 -1.5 -2.6 CheW domain protein compare
PP_3899 -1.5 -1.6 conserved protein of unknown function, hicB family compare
PP_0232 -1.5 -1.0 ATP-binding taurine transporter subunit compare
PP_0640 -1.5 -1.8 conserved protein of unknown function compare
PP_2972 -1.5 -1.0 conserved protein of unknown function compare
PP_4124 -1.5 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_4808 -1.5 -0.9 23S rRNA m3psi1915 methyltransferase compare
PP_1734 -1.5 -2.2 Probable septum site-determining protein MinC compare
PP_2337 -1.5 -1.9 aconitate isomerase compare
PP_1269 -1.4 -0.9 Universal stress protein family compare
PP_1143 -1.4 -2.2 3-hydroxyisobutyrate dehydrogenase family protein compare
PP_2433 -1.4 -1.0 conserved protein of unknown function compare
PP_0910 -1.4 -2.6 conserved exported protein of unknown function compare
PP_3989 -1.4 -1.7 DNA-cytosine methyltransferase compare
PP_2327 -1.4 -2.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0610 -1.4 -1.4 conserved exported protein of unknown function compare
PP_2929 -1.4 -3.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4895 -1.4 -2.4 tRNA dimethylallyltransferase compare
PP_5625 -1.4 -1.9 conserved protein of unknown function compare
PP_5039 -1.4 -1.5 conserved protein of unknown function compare
PP_1062 -1.4 -0.9 MutT/nudix family protein compare
PP_4517 -1.4 -1.0 conserved protein of unknown function compare
PP_5610 -1.4 -1.5 protein of unknown function compare
PP_2340 -1.3 -1.7 conserved protein of unknown function compare
PP_3392 -1.3 -1.0 conserved protein of unknown function compare
PP_1217 -1.3 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4480 -1.3 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_2765 -1.3 -0.9 putative Sulfonate monooxygenase MsuD compare
PP_1153 -1.3 -1.9 putative lipoprotein compare
PP_5639 -1.3 -3.9 conserved exported protein of unknown function compare
PP_1605 -1.3 -1.3 Ribonuclease HII compare
PP_5628 -1.3 -1.9 conserved protein of unknown function compare
PP_3417 -1.3 -2.0 D-gluconate transporter compare
PP_5229 -1.3 -2.0 conserved protein of unknown function compare
PP_1404 -1.3 -0.8 conserved protein of unknown function compare
PP_1020 -1.3 -1.5 putative glucose-6-phosphate 1-epimerase compare
PP_1022 -1.2 -2.1 glucose 6-phosphate-1-dehydrogenase compare
PP_3707 -1.2 -1.4 conserved protein of unknown function compare
PP_1656 -1.2 -4.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_5393 -1.2 -1.0 putative metal-binding chaperone compare
PP_0153 -1.2 -1.2 hypothetical protein compare
PP_0236 -1.2 -1.4 NAD(P)H-dependent FMN reductase subunit compare
PP_4199 -1.2 -0.8 putative Lipoprotein compare
PP_4471 -1.2 -1.7 Magnesium transporter compare
PP_5015 -1.2 -1.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5423 -1.2 -1.4 conserved membrane protein of unknown function compare
PP_2720 -1.2 -0.9 conserved protein of unknown function compare
PP_4693 -1.2 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_0235 -1.2 -1.5 Peroxidase compare
PP_3239 -1.2 -0.8 putative cointegrate resolution protein T Tn4652 compare
PP_0848 -1.2 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0138 -1.2 -4.2 conserved membrane protein of unknown function compare
PP_4338 -1.1 -2.3 Chemotaxis histidine kinase CheA compare
PP_5695 -1.1 -1.9 conserved protein of unknown function compare
PP_2375 -1.1 -4.5 cobalamin-dependent methionine synthase compare
PP_0957 -1.1 -0.9 D-arabinose 5-phosphate isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms