Experiment set18IT090 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.3 -5.0 Indole-3-glycerol phosphate synthase compare
PP_2031 -7.3 -2.9 conserved protein of unknown function compare
PP_1898 -7.1 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0292 -6.6 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3766 -6.3 -2.9 Lactoylglutathione lyase compare
PP_0290 -6.2 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4994 -6.1 -6.5 conserved protein of unknown function compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_4364 -5.7 -4.7 putative Anti-sigma F factor antagonist compare
PP_5075 -5.6 -14.1 glutamate synthase (NADPH) beta subunit compare
PP_2327 -5.3 -5.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -5.2 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_4679 -5.2 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1269 -5.2 -1.2 Universal stress protein family compare
PP_3541 -5.1 -2.2 Transporter, MgtC family compare
PP_0959 -5.1 -2.6 phospholipid ABC transporter compare
PP_0289 -5.1 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_3447 -5.1 -1.2 conserved membrane protein of unknown function compare
PP_0184 -5.0 -8.3 Argininosuccinate lyase compare
PP_5017 -5.0 -1.2 Sec-independent protein translocase protein TatB compare
PP_5014 -5.0 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4271 -4.7 -1.1 conserved protein of unknown function compare
PP_1362 -4.6 -3.2 pyruvate kinase II compare
PP_5347 -4.6 -12.3 pyruvate carboxylase subunit A compare
PP_0966 -4.6 -8.9 Histidinol dehydrogenase compare
PP_0082 -4.5 -6.5 tryptophan synthase alpha chain compare
PP_5185 -4.5 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2899 -4.4 -1.4 conserved exported protein of unknown function compare
PP_2371 -4.4 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.4 -7.9 phosphoserine phosphatase compare
PP_0001 -4.4 -2.0 probable chromosome-partitioning protein compare
PP_1344 -4.3 -1.9 conserved protein of unknown function compare
PP_5076 -4.1 -12.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_2402 -4.1 -2.5 putative Sensor histidine kinase compare
PP_1215 -4.1 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4696 -4.0 -7.1 Nitrogen regulation protein NR(I) compare
PP_5393 -3.9 -1.3 putative metal-binding chaperone compare
PP_2378 -3.8 -2.6 Fe/S biogenesis protein NfuA compare
PP_3930 -3.7 -2.5 conserved exported protein of unknown function compare
PP_3999 -3.6 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -3.6 -8.4 homoserine O-acetyltransferase compare
PP_4785 -3.6 -4.1 conserved exported protein of unknown function compare
PP_0967 -3.6 -6.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -3.5 -8.5 Ketol-acid reductoisomerase compare
PP_1995 -3.5 -5.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -3.4 -5.1 methionine biosynthesis protein MetW compare
PP_0965 -3.4 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4680 -3.3 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1237 -3.2 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1988 -3.2 -4.6 3-isopropylmalate dehydrogenase compare
PP_2001 -3.2 -5.6 O-succinylhomoserine sulfhydrylase compare
PP_1025 -3.2 -7.2 2-isopropylmalate synthase compare
PP_1088 -3.2 -7.7 Argininosuccinate synthase compare
PP_5552 -3.1 -2.0 conserved protein of unknown function compare
PP_1079 -3.1 -2.7 Ornithine carbamoyltransferase compare
PP_4874 -3.1 -1.4 50S ribosomal protein L9 compare
PP_4004 -3.0 -4.0 DNA translocase FtsK compare
PP_0065 -3.0 -4.3 NAD-binding component of TrK potassium transporter compare
PP_2370 -3.0 -1.9 conserved protein of unknown function compare
PP_5128 -3.0 -5.1 Dihydroxy-acid dehydratase compare
PP_1022 -2.9 -5.1 glucose 6-phosphate-1-dehydrogenase compare
PP_3511 -2.8 -4.0 Branched-chain-amino-acid aminotransferase compare
PP_5348 -2.8 -5.0 Transcriptional regulator, LysR family compare
PP_t29 -2.8 -2.5 tRNA-Ala compare
PP_4890 -2.8 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1788 -2.8 -2.2 conserved protein of unknown function compare
PP_2088 -2.7 -2.3 RNA polymerase sigma factor SigX compare
PP_0164 -2.7 -4.6 conserved protein of unknown function compare
PP_1664 -2.7 -1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0025 -2.6 -1.2 hypothetical protein compare
PP_0417 -2.6 -9.4 Anthranilate synthase component 1 compare
PP_4528 -2.6 -1.8 conserved protein of unknown function compare
PP_4977 -2.6 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_1045 -2.6 -1.4 Type II secretion pathway protein XcpP compare
PP_4699 -2.6 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_4131 -2.5 -7.0 NADH-quinone oxidoreductase subunit N compare
PP_0293 -2.5 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3892 -2.5 -1.2 conserved protein of unknown function compare
PP_5717 -2.5 -1.5 conserved protein of unknown function compare
PP_4129 -2.5 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5095 -2.5 -1.1 pyrroline-5-carboxylate reductase compare
PP_1553 -2.5 -2.0 conserved protein of unknown function compare
PP_0421 -2.5 -4.5 Anthranilate phosphoribosyltransferase compare
PP_1654 -2.3 -3.1 cysteine synthase B compare
PP_1231 -2.3 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5346 -2.3 -3.9 pyruvate carboxylase subunit B compare
PP_1906 -2.3 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_2773 -2.3 -1.8 conserved protein of unknown function compare
PP_4964 -2.2 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_3417 -2.2 -3.4 D-gluconate transporter compare
PP_0086 -2.2 -1.5 conserved protein of unknown function compare
PP_0364 -2.2 -3.6 pimeloyl-[acp] methyl ester esterase compare
PP_5582 -2.2 -1.3 conserved protein of unknown function compare
PP_4829 -2.2 -2.0 putative precorrin-3B synthase compare
PP_5303 -2.1 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0362 -2.1 -4.8 Biotin synthase compare
PP_2168 -2.1 -4.2 Transaldolase compare
PP_4895 -2.0 -1.4 tRNA dimethylallyltransferase compare
PP_5048 -2.0 -2.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4581 -2.0 -1.2 putative amidotransferase compare
PP_3989 -2.0 -2.3 DNA-cytosine methyltransferase compare
PP_4561 -2.0 -0.9 stress response protein compare
PP_4126 -2.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_5217 -2.0 -5.2 Polyphosphate kinase compare
PP_4480 -1.9 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_2203 -1.9 -1.6 conserved protein of unknown function compare
PP_5104 -1.9 -3.5 thiazole synthase compare
PP_1114 -1.9 -2.9 SEC-C domain protein compare
PP_1985 -1.9 -2.3 3-isopropylmalate dehydratase large subunit compare
PP_2903 -1.9 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1986 -1.9 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_0291 -1.9 -1.7 conserved protein of unknown function compare
PP_2873 -1.8 -3.4 conserved protein of unknown function, UPF0145 family compare
PP_1770 -1.8 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4697 -1.8 -1.9 poly(A) polymerase compare
PP_4124 -1.8 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_4989 -1.8 -2.2 Protein PilJ compare
PP_4130 -1.8 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1681 -1.8 -5.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2145 -1.7 -2.3 beta-N-acetylglucosaminidase compare
PP_0420 -1.7 -4.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1062 -1.7 -2.0 MutT/nudix family protein compare
PP_0978 -1.7 -1.1 conserved protein of unknown function compare
PP_2375 -1.7 -5.2 cobalamin-dependent methionine synthase compare
PP_0833 -1.7 -1.0 queuine tRNA-ribosyltransferase compare
PP_0719 -1.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1310 -1.6 -1.1 conserved hypothetical protein compare
PP_1632 -1.6 -1.5 conserved protein of unknown function compare
PP_4943 -1.6 -1.5 putative Glycosyl transferase compare
PP_3904 -1.6 -0.9 conserved protein of unknown function compare
PP_2307 -1.6 -1.0 conserved protein of unknown function compare
PP_5203 -1.6 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
PP_2816 -1.6 -1.5 putative Transcriptional regulator NfxB compare
PP_0628 -1.6 -2.2 conserved protein of unknown function compare
PP_3241 -1.6 -1.1 conserved exported protein of unknown function compare
PP_1709 -1.6 -2.7 Fumarylacetoacetate hydrolase family protein compare
PP_4830 -1.6 -2.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_0040 -1.5 -2.2 hypothetical protein compare
PP_4504 -1.5 -0.8 conserved exported protein of unknown function compare
PP_4787 -1.5 -1.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0153 -1.5 -1.5 hypothetical protein compare
PP_4832 -1.5 -2.1 Precorrin-6x reductase compare
PP_3821 -1.5 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1164 -1.5 -1.6 Transcriptional regulator, LysR family compare
PP_4482 -1.5 -2.0 Transcriptional regulator, AraC family compare
PP_0787 -1.5 -1.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0630 -1.5 -0.9 DNA gyrase inhibitor YacG compare
PP_0643 -1.5 -1.7 protein of unknown function compare
PP_0962 -1.5 -1.5 toluene-tolerance protein compare
PP_0232 -1.5 -1.0 ATP-binding taurine transporter subunit compare
PP_2887 -1.5 -2.7 Catalase-related peroxidase compare
PP_4471 -1.5 -2.6 Magnesium transporter compare
PP_1068 -1.5 -2.2 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1426 -1.5 -4.3 L-aspartate oxidase compare
PP_3408 -1.4 -1.6 cobalt transporter subunit A compare
PP_3384 -1.4 -2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_4966 -1.4 -1.9 transcriptional regulator of methionine metabolism compare
PP_2302 -1.4 -3.1 DNA-binding, ATP-dependent protease compare
PP_0366 -1.4 -4.1 dethiobiotin synthetase compare
PP_5310 -1.4 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_0363 -1.4 -4.1 8-amino-7-oxononanoate synthase compare
PP_1575 -1.4 -1.4 conserved protein of unknown function compare
PP_3824 -1.4 -1.4 conserved exported protein of unknown function compare
PP_5350 -1.4 -1.7 Transcriptional regulator, RpiR family compare
PP_1672 -1.4 -1.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5227 -1.4 -3.5 diaminopimelate decarboxylase compare
PP_4984 -1.4 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2309 -1.4 -1.0 conserved protein of unknown function compare
PP_2313 -1.4 -1.0 conserved membrane protein of unknown function compare
PP_1731 -1.4 -2.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1217 -1.4 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5015 -1.4 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3738 -1.4 -1.5 putative Transcriptional regulator VanR compare
PP_4564 -1.3 -2.3 putative Lipoprotein compare
PP_1629 -1.3 -2.9 Protein RecA compare
PP_1110 -1.3 -1.3 serine acetyltransferase compare
PP_0949 -1.3 -2.7 putative ATP-binding protein UPF0042 compare
PP_3560 -1.3 -2.6 Transcriptional regulator, LysR family compare
PP_0377 -1.3 -0.9 coenzyme PQQ synthesis protein D compare
PP_3398 -1.3 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2969 -1.3 -2.0 putative repressor of copper utilisation proteins compare
PP_5168 -1.3 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_1656 -1.3 -4.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_5022 -1.3 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_0725 -1.3 -2.4 conserved hypothetical TPR repeat protein compare
PP_2776 -1.2 -1.9 Homocysteine S-methyltransferase family protein compare
PP_0627 -1.2 -0.8 conserved protein of unknown function compare
PP_4897 -1.2 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PP_1674 -1.2 -2.1 5,6-dimethylbenzimidazole synthase compare
PP_5026 -1.2 -3.7 Glucans biosynthesis protein G compare
PP_4559 -1.2 -2.1 peptide deformylase compare
PP_5094 -1.2 -1.6 putative enzyme with PLP binding domain compare
PP_0114 -1.2 -2.8 methionine ABC transporter ATP-binding protein compare
PP_4122 -1.2 -0.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4507 -1.2 -3.6 potassium transporter compare
PP_5639 -1.2 -4.0 conserved exported protein of unknown function compare
PP_5155 -1.2 -2.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4695 -1.2 -4.6 Sensory box histidine kinase compare
PP_4701 -1.2 -0.7 glucose-6-phosphate isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms