Experiment set18IT088 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_4847 -7.4 -2.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_2756 -7.4 -2.4 conserved protein of unknown function compare
PP_4994 -7.1 -4.5 conserved protein of unknown function compare
PP_1898 -7.0 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4094 -6.6 -2.2 conserved protein of unknown function compare
PP_5075 -6.4 -10.8 glutamate synthase (NADPH) beta subunit compare
PP_0293 -6.4 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -6.0 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -5.9 -2.5 3-isopropylmalate dehydratase small subunit compare
PP_5705 -5.8 -1.9 protein of unknown function compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_4406 -5.7 -2.4 conserved protein of unknown function compare
PP_0083 -5.6 -3.9 tryptophan synthase beta chain compare
PP_5289 -5.5 -3.2 Acetylglutamate kinase compare
PP_5098 -5.5 -8.7 methionine biosynthesis protein MetW compare
PP_2857 -5.3 -1.4 conserved exported protein of unknown function compare
PP_1987 -5.2 -1.4 Methlytransferase, UbiE/COQ5 family compare
PP_0566 -5.2 -1.0 translation-related factor compare
PP_5007 -5.2 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3098 -5.1 -1.0 conserved protein of unknown function compare
PP_0422 -5.1 -4.9 Indole-3-glycerol phosphate synthase compare
PP_0022 -4.9 -1.0 hypothetical protein compare
PP_0290 -4.9 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0959 -4.9 -2.1 phospholipid ABC transporter compare
PP_5076 -4.8 -14.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_1293 -4.7 -1.3 molybdopterin synthase small subunit compare
PP_3245 -4.7 -1.3 conserved protein of unknown function compare
PP_4701 -4.7 -0.9 glucose-6-phosphate isomerase compare
PP_1045 -4.7 -1.3 Type II secretion pathway protein XcpP compare
PP_2793 -4.7 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_4680 -4.7 -11.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0593 -4.7 -0.9 putative ribosome-binding factor compare
PP_4561 -4.6 -0.9 stress response protein compare
PP_2001 -4.6 -7.4 O-succinylhomoserine sulfhydrylase compare
PP_0735 -4.6 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_4296 -4.6 -1.2 conserved exported protein of unknown function compare
PP_0292 -4.5 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4528 -4.4 -1.2 conserved protein of unknown function compare
PP_3312 -4.4 -1.2 putative Heat shock protein compare
PP_2337 -4.3 -2.3 aconitate isomerase compare
PP_0966 -4.3 -7.4 Histidinol dehydrogenase compare
PP_4504 -4.3 -1.1 conserved exported protein of unknown function compare
PP_2403 -4.3 -1.2 Chemotaxis protein CheY compare
PP_1985 -4.3 -3.5 3-isopropylmalate dehydratase large subunit compare
PP_4890 -4.3 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -4.1 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1672 -4.1 -4.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1764 -4.1 -2.5 Phosphoglycolate phosphatase 2 compare
PP_1654 -4.1 -2.6 cysteine synthase B compare
PP_5008 -4.1 -1.1 Poly granule-associated protein compare
PP_4262 -4.0 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3926 -4.0 -1.1 short-chain dehydrogenase compare
PP_4828 -4.0 -1.1 Precorrin-8X methylmutase compare
PP_0007 -4.0 -2.3 conserved hypothetical protein compare
PP_4804 -3.9 -2.7 RlpA-like lipoprotein compare
PP_1055 -3.9 -1.0 Type II secretion pathway protein GspN compare
PP_1366 -3.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_3511 -3.9 -5.3 Branched-chain-amino-acid aminotransferase compare
PP_0846 -3.9 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_5393 -3.8 -1.0 putative metal-binding chaperone compare
PP_5456 -3.8 -1.0 conserved protein of unknown function compare
PP_1836 -3.8 -2.6 putative metal transporter, ZIP family compare
PP_1988 -3.8 -5.4 3-isopropylmalate dehydrogenase compare
PP_3999 -3.7 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1493 -3.7 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5097 -3.7 -7.8 homoserine O-acetyltransferase compare
PP_5128 -3.7 -6.4 Dihydroxy-acid dehydratase compare
PP_0184 -3.6 -5.5 Argininosuccinate lyase compare
PP_2525 -3.6 -2.5 conserved protein of unknown function compare
PP_3902 -3.6 -2.5 conserved protein of unknown function compare
PP_0967 -3.6 -6.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2378 -3.5 -2.1 Fe/S biogenesis protein NfuA compare
PP_0434 -3.5 -4.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1733 -3.5 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1362 -3.4 -4.5 pyruvate kinase II compare
PP_1022 -3.4 -5.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5093 -3.3 -0.9 twitching motility protein compare
PP_1231 -3.3 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4785 -3.2 -5.4 conserved exported protein of unknown function compare
PP_0291 -3.2 -2.7 conserved protein of unknown function compare
PP_2145 -3.2 -2.7 beta-N-acetylglucosaminidase compare
PP_4696 -3.2 -4.5 Nitrogen regulation protein NR(I) compare
PP_4136 -3.2 -0.8 Transcriptional regulator, LuxR family compare
PP_0787 -3.1 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0377 -3.1 -1.4 coenzyme PQQ synthesis protein D compare
PP_2328 -3.1 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_1559 -3.1 -3.8 Holin compare
PP_0122 -3.1 -1.8 conserved exported protein of unknown function compare
PP_2370 -3.1 -2.7 conserved protein of unknown function compare
PP_1995 -3.0 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1679 -3.0 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5348 -2.9 -4.8 Transcriptional regulator, LysR family compare
PP_4874 -2.9 -1.1 50S ribosomal protein L9 compare
PP_4964 -2.8 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0962 -2.8 -1.9 toluene-tolerance protein compare
PP_1025 -2.7 -5.9 2-isopropylmalate synthase compare
PP_1176 -2.7 -1.7 conserved protein of unknown function compare
PP_5198 -2.7 -3.0 conserved protein of unknown function compare
PP_0206 -2.7 -2.4 Ferredoxin, 4Fe-4S compare
PP_5346 -2.7 -4.4 pyruvate carboxylase subunit B compare
PP_5347 -2.7 -5.7 pyruvate carboxylase subunit A compare
PP_2168 -2.7 -5.2 Transaldolase compare
PP_2547 -2.7 -1.6 Transcriptional regulator, LysR family compare
PP_2160 -2.6 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1088 -2.6 -6.5 Argininosuccinate synthase compare
PP_4180 -2.6 -1.8 conserved protein of unknown function compare
PP_4387 -2.5 -1.7 conserved exported protein of unknown function compare
PP_2462 -2.5 -1.8 conserved protein of unknown function compare
PP_1428 -2.5 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_0827 -2.5 -1.4 putative phosphonate transport system permease protein PtxC compare
PP_0420 -2.5 -4.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0965 -2.5 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1568 -2.5 -1.0 conserved protein of unknown function compare
PP_2878 -2.5 -1.6 conserved protein of unknown function compare
PP_2327 -2.4 -3.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0888 -2.4 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0289 -2.4 -4.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_4679 -2.3 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3094 -2.3 -1.6 conserved exported protein of unknown function compare
PP_0307 -2.3 -1.6 conserved exported protein of unknown function compare
PP_4829 -2.3 -2.3 putative precorrin-3B synthase compare
PP_0978 -2.3 -1.2 conserved protein of unknown function compare
PP_0417 -2.3 -7.3 Anthranilate synthase component 1 compare
PP_4678 -2.3 -5.3 Ketol-acid reductoisomerase compare
PP_3508 -2.2 -2.0 Protein CobW compare
PP_3164 -2.2 -1.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_0512 -2.2 -1.7 hypothetical protein compare
PP_5095 -2.2 -0.8 pyrroline-5-carboxylate reductase compare
PP_4178 -2.2 -1.7 Dienelactone hydrolase family protein compare
PP_4943 -2.2 -1.7 putative Glycosyl transferase compare
PP_1729 -2.2 -1.2 conserved protein of unknown function compare
PP_0668 -2.2 -3.4 putative Transmembrane sensor compare
PP_3239 -2.2 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_4684 -2.2 -4.3 conserved protein of unknown function with kinase-like domain compare
PP_0998 -2.2 -5.1 conserved protein of unknown function compare
PP_2429 -2.2 -1.6 putative Membrane protein compare
PP_0365 -2.1 -3.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2633 -2.1 -1.2 conserved protein of unknown function compare
PP_0364 -2.1 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_2530 -2.1 -1.2 conserved protein of unknown function compare
PP_3904 -2.1 -1.2 conserved protein of unknown function compare
PP_1716 -2.0 -1.2 Transcriptional regulator, Cro/CI family compare
PP_2307 -2.0 -1.9 conserved protein of unknown function compare
PP_4546 -2.0 -3.8 ATP-dependent helicase HrpA compare
PP_1812 -2.0 -1.0 conserved protein of unknown function compare
PP_4131 -2.0 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_5027 -2.0 -0.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2899 -2.0 -1.1 conserved exported protein of unknown function compare
PP_4937 -2.0 -3.0 toluene tolerance protein compare
PP_0905 -2.0 -1.2 conserved exported protein of unknown function compare
PP_1054 -2.0 -1.1 Type II secretion pathway protein XcpZ compare
PP_3346 -2.0 -2.0 Nickel transporter ATP-binding protein compare
PP_5310 -2.0 -4.1 junction-specific ATP-dependent DNA helicase compare
PP_4830 -2.0 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_1664 -2.0 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1303 -2.0 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_1079 -2.0 -2.3 Ornithine carbamoyltransferase compare
PP_0608 -1.9 -3.1 putative type 4 fimbrial biogenesis protein compare
PP_5303 -1.9 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4569 -1.9 -1.1 conserved protein of unknown function compare
PP_1783 -1.9 -1.1 dTDP-glucose pyrophosphorylase compare
PP_5155 -1.9 -2.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4133 -1.9 -1.5 Transcriptional regulator-related protein compare
PP_5218 -1.9 -1.7 DedA family protein compare
PP_0393 -1.9 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3258 -1.8 -1.4 conserved protein of unknown function compare
PP_4268 -1.8 -1.0 nucleoid-associated broad specificity regulator compare
PP_4008 -1.8 -4.0 ATP-dependent serine protease compare
PP_0258 -1.8 -1.9 regulator of murein cross-linking compare
PP_4120 -1.8 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_4977 -1.8 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_5058 -1.8 -3.0 Carboxy-terminal-processing protease compare
PP_5017 -1.8 -0.8 Sec-independent protein translocase protein TatB compare
PP_2309 -1.8 -0.9 conserved protein of unknown function compare
PP_5015 -1.8 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3417 -1.8 -1.8 D-gluconate transporter compare
PP_4941 -1.8 -3.5 conserved exported protein of unknown function compare
PP_0127 -1.8 -1.6 Thiol:disulfide interchange protein compare
PP_1675 -1.8 -3.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5104 -1.8 -2.8 thiazole synthase compare
PP_4004 -1.8 -2.0 DNA translocase FtsK compare
PP_0326 -1.8 -2.1 sarcosine oxidase subunit gamma compare
PP_2388 -1.7 -1.3 Transporter, LysE family compare
PP_5422 -1.7 -1.1 hypothetical protein compare
PP_1476 -1.7 -2.8 conserved protein of unknown function compare
PP_5582 -1.7 -0.9 conserved protein of unknown function compare
PP_3411 -1.7 -1.1 conserved protein of unknown function compare
PP_1239 -1.7 -1.6 Metallo-beta-lactamase family protein compare
PP_1026 -1.7 -1.1 Peptidase, M23/M37 family compare
PP_3891 -1.7 -1.3 conserved protein of unknown function compare
PP_0261 -1.7 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0585 -1.7 -1.2 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2745 -1.7 -1.6 Universal stress protein family compare
PP_3756 -1.7 -2.1 TetR family transcriptional regulator compare
PP_3770 -1.7 -1.6 conserved protein of unknown function compare
PP_5073 -1.7 -0.9 conserved exported protein of unknown function compare
PP_4993 -1.7 -2.9 Glutathione synthetase compare
PP_2159 -1.7 -1.4 Copper-binding protein, plastocyanin/azurin family compare
PP_3237 -1.7 -1.6 Universal stress protein family compare


Specific Phenotypes

For 1 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms