Experiment set18IT084 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 200 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.8 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0293 -6.6 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -6.0 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5331 -5.9 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_2370 -5.8 -3.5 conserved protein of unknown function compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_0967 -5.7 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2327 -5.6 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0289 -5.3 -9.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5054 -5.0 -3.0 glutaredoxin 3 compare
PP_1079 -4.9 -6.4 Ornithine carbamoyltransferase compare
PP_5015 -4.7 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0377 -4.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_5346 -4.5 -7.8 pyruvate carboxylase subunit B compare
PP_3999 -4.5 -6.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -4.5 -8.1 Argininosuccinate lyase compare
PP_1995 -4.5 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5075 -4.5 -11.1 glutamate synthase (NADPH) beta subunit compare
PP_1553 -4.4 -3.4 conserved protein of unknown function compare
PP_2403 -4.3 -1.5 Chemotaxis protein CheY compare
PP_4680 -4.3 -11.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -4.3 -4.2 Indole-3-glycerol phosphate synthase compare
PP_0846 -4.0 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_4679 -4.0 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -3.9 -5.4 tryptophan synthase alpha chain compare
PP_0421 -3.9 -5.1 Anthranilate phosphoribosyltransferase compare
PP_1088 -3.8 -9.9 Argininosuccinate synthase compare
PP_4994 -3.8 -4.9 conserved protein of unknown function compare
PP_2615 -3.8 -2.5 hemolysin-coregulated protein compare
PP_2001 -3.7 -7.2 O-succinylhomoserine sulfhydrylase compare
PP_4696 -3.6 -7.1 Nitrogen regulation protein NR(I) compare
PP_5097 -3.5 -8.9 homoserine O-acetyltransferase compare
PP_0417 -3.5 -11.7 Anthranilate synthase component 1 compare
PP_5128 -3.5 -6.3 Dihydroxy-acid dehydratase compare
PP_5098 -3.4 -5.5 methionine biosynthesis protein MetW compare
PP_2168 -3.4 -6.7 Transaldolase compare
PP_0965 -3.4 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -3.4 -7.1 Histidinol dehydrogenase compare
PP_1898 -3.4 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1824 -3.4 -1.6 Smr domain protein compare
PP_0508 -3.4 -2.4 conserved exported protein of unknown function compare
PP_4909 -3.3 -6.1 phosphoserine phosphatase compare
PP_1322 -3.3 -1.5 putative Lipoprotein compare
PP_4678 -3.3 -7.4 Ketol-acid reductoisomerase compare
PP_5289 -3.2 -3.1 Acetylglutamate kinase compare
PP_0848 -3.2 -2.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0292 -3.2 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0787 -3.2 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5348 -3.2 -5.5 Transcriptional regulator, LysR family compare
PP_1988 -3.1 -6.0 3-isopropylmalate dehydrogenase compare
PP_4874 -3.1 -1.5 50S ribosomal protein L9 compare
PP_0420 -3.1 -6.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2328 -3.0 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_3098 -3.0 -1.2 conserved protein of unknown function compare
PP_1677 -2.9 -3.9 Adenosyl-cobyric acid synthase compare
PP_1231 -2.9 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3511 -2.9 -4.2 Branched-chain-amino-acid aminotransferase compare
PP_2371 -2.8 -5.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5347 -2.8 -6.1 pyruvate carboxylase subunit A compare
PP_5217 -2.7 -6.8 Polyphosphate kinase compare
PP_1022 -2.7 -5.3 glucose 6-phosphate-1-dehydrogenase compare
PP_5155 -2.7 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4964 -2.6 -4.5 D-erythrose 4-phosphate dehydrogenase compare
PP_0406 -2.6 -3.0 Nucleotidyltransferase family protein compare
PP_3318 -2.5 -2.1 conserved protein of unknown function compare
PP_1344 -2.5 -1.6 conserved protein of unknown function compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_5185 -2.4 -3.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5095 -2.4 -1.2 pyrroline-5-carboxylate reductase compare
PP_5303 -2.3 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0916 -2.3 -2.2 Amino acid transporter LysE compare
PP_4785 -2.3 -4.1 conserved exported protein of unknown function compare
PP_0291 -2.2 -2.2 conserved protein of unknown function compare
PP_1985 -2.2 -2.0 3-isopropylmalate dehydratase large subunit compare
PP_1362 -2.1 -3.0 pyruvate kinase II compare
PP_0065 -2.1 -3.1 NAD-binding component of TrK potassium transporter compare
PP_4895 -2.0 -1.4 tRNA dimethylallyltransferase compare
PP_1099 -2.0 -2.1 Cold shock protein CapB compare
PP_4098 -2.0 -2.1 UvrABC system protein C compare
PP_0365 -2.0 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0789 -2.0 -3.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5076 -2.0 -8.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_4942 -1.9 -2.2 conserved protein of unknown function compare
PP_2336 -1.9 -4.4 aconitate hydratase 1 compare
PP_5652 -1.9 -1.9 conserved protein of unknown function, phage origin compare
PP_4699 -1.9 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2253 -1.9 -1.2 Transcriptional regulator, GntR family compare
PP_2747 -1.9 -1.4 conserved protein of unknown function compare
PP_0022 -1.9 -1.0 hypothetical protein compare
PP_1734 -1.9 -3.5 Probable septum site-determining protein MinC compare
PP_4943 -1.9 -1.8 putative Glycosyl transferase compare
PP_2510 -1.8 -1.4 conserved protein of unknown function compare
PP_5583 -1.8 -1.7 conserved protein of unknown function compare
PP_0677 -1.8 -3.7 putative Lipoprotein compare
PP_4693 -1.8 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_4227 -1.8 -1.1 conserved protein of unknown function compare
PP_1629 -1.8 -3.6 Protein RecA compare
PP_5216 -1.8 -1.1 exopolyphosphatase compare
PP_1912 -1.7 -2.5 Phosphate acyltransferase compare
PP_1216 -1.7 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2928 -1.7 -3.3 Saccharopine dehydrogenase compare
PP_0630 -1.7 -1.0 DNA gyrase inhibitor YacG compare
PP_4782 -1.7 -4.1 Phosphomethylpyrimidine kinase compare
PP_0888 -1.7 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_3505 -1.7 -0.9 conserved protein of unknown function compare
PP_1214 -1.7 -1.6 putative transcriptional regulatory protein compare
PP_0833 -1.6 -1.1 queuine tRNA-ribosyltransferase compare
PP_4830 -1.6 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_2581 -1.6 -1.3 conserved protein of unknown function compare
PP_0585 -1.6 -1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4997 -1.6 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3307 -1.6 -1.4 conserved protein of unknown function compare
PP_3241 -1.6 -1.2 conserved exported protein of unknown function compare
PP_2337 -1.6 -2.0 aconitate isomerase compare
PP_4273 -1.6 -0.7 Transcriptional regulator, MerR family compare
PP_3417 -1.5 -2.9 D-gluconate transporter compare
PP_1681 -1.5 -4.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5320 -1.5 -2.9 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_0643 -1.5 -1.8 protein of unknown function compare
PP_1025 -1.5 -4.9 2-isopropylmalate synthase compare
PP_1654 -1.5 -2.1 cysteine synthase B compare
PP_5701 -1.5 -0.9 conserved protein of unknown function compare
PP_1218 -1.5 -2.0 putative acyl-CoA thioesterase compare
PP_4129 -1.5 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0025 -1.5 -1.0 hypothetical protein compare
PP_4824 -1.5 -3.6 Sensor histidine kinase/response regulator compare
PP_4124 -1.5 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_0363 -1.5 -4.4 8-amino-7-oxononanoate synthase compare
PP_4131 -1.4 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_2402 -1.4 -1.3 putative Sensor histidine kinase compare
PP_0886 -1.4 -1.4 conserved exported protein of unknown function compare
PP_4826 -1.4 -2.7 Precorrin-3B C17-methyltransferase compare
PP_4804 -1.4 -2.5 RlpA-like lipoprotein compare
PP_1062 -1.4 -1.6 MutT/nudix family protein compare
PP_5104 -1.4 -3.9 thiazole synthase compare
PP_4130 -1.4 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1774 -1.4 -1.4 conserved exported protein of unknown function compare
PP_5725 -1.3 -2.2 protein of unknown function compare
PP_t11 -1.3 -1.1 tRNA-Lys compare
PP_2675 -1.3 -1.9 Cytochrome c-type protein compare
PP_0002 -1.3 -3.4 probable chromosome partition protein compare
PP_1366 -1.3 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5310 -1.3 -3.2 junction-specific ATP-dependent DNA helicase compare
PP_5248 -1.3 -1.2 putative hydrolase compare
PP_1656 -1.3 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1733 -1.3 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3245 -1.3 -1.1 conserved protein of unknown function compare
PP_1716 -1.2 -0.7 Transcriptional regulator, Cro/CI family compare
PP_3506 -1.2 -1.9 Magnesium chelatase, subunit ChII compare
PP_0366 -1.2 -2.8 dethiobiotin synthetase compare
PP_1387 -1.2 -2.5 Probable HTH-type transcriptional regulator TtgR compare
PP_4902 -1.2 -1.3 Oligoribonuclease compare
PP_0003 -1.2 -1.4 16S RNA methyltransferase compare
PP_4009 -1.2 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_4379 -1.2 -2.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4829 -1.2 -1.9 putative precorrin-3B synthase compare
PP_0905 -1.2 -0.8 conserved exported protein of unknown function compare
PP_0364 -1.2 -2.8 pimeloyl-[acp] methyl ester esterase compare
PP_1655 -1.2 -2.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1528 -1.2 -1.0 conserved protein of unknown function compare
PP_4981 -1.2 -1.0 polyisoprene-binding protein, acidic stress response factor compare
PP_5639 -1.2 -3.6 conserved exported protein of unknown function compare
PP_2388 -1.2 -1.7 Transporter, LysE family compare
PP_1673 -1.2 -2.0 cobyrinate a,c-diamide synthase compare
PP_1764 -1.2 -1.8 Phosphoglycolate phosphatase 2 compare
PP_1051 -1.2 -1.9 Type II secretion pathway protein XcpV compare
PP_4546 -1.2 -2.4 ATP-dependent helicase HrpA compare
PP_4584 -1.2 -1.8 putative endonuclease compare
PP_5350 -1.2 -1.7 Transcriptional regulator, RpiR family compare
PP_0122 -1.2 -1.5 conserved exported protein of unknown function compare
PP_4066 -1.1 -1.7 methylglutaconyl-CoA hydratase compare
PP_2725 -1.1 -1.5 Protease PfpI compare
PP_2375 -1.1 -5.2 cobalamin-dependent methionine synthase compare
PP_4977 -1.1 -3.7 5,10-methylenetetrahydrofolate reductase compare
PP_2820 -1.1 -1.6 HTH-type transcriptional regulator nfxB compare
PP_1679 -1.1 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3102 -1.1 -2.5 conserved protein of unknown function compare
PP_2274 -1.1 -2.0 conserved protein of unknown function compare
PP_4722 -1.1 -2.1 Transcription elongation factor GreA compare
PP_3239 -1.1 -0.8 putative cointegrate resolution protein T Tn4652 compare
PP_3902 -1.1 -1.8 conserved protein of unknown function compare
PP_4267 -1.1 -3.2 Recombination protein RecR compare
PP_1346 -1.1 -2.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1770 -1.1 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1617 -1.1 -2.9 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_0164 -1.1 -2.0 conserved protein of unknown function compare
PP_2217 -1.1 -1.7 enoyl-CoA hydratase compare
PP_3924 -1.1 -2.0 conserved protein of unknown function compare
PP_1479 -1.1 -1.7 HicB protein compare
PP_0725 -1.1 -1.9 conserved hypothetical TPR repeat protein compare
PP_2429 -1.1 -1.4 putative Membrane protein compare
PP_1328 -1.1 -1.2 Protein MraZ compare
PP_1147 -1.1 -2.2 conserved protein of unknown function compare
PP_4164 -1.1 -2.5 Alpha/beta hydrolase compare
PP_2712 -1.1 -1.3 conserved exported protein of unknown function compare
PP_2153 -1.1 -1.3 conserved protein of unknown function compare
PP_5594 -1.0 -1.1 conserved protein of unknown function compare
PP_t12 -1.0 -0.7 tRNA-Thr compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress D-Glucose across organisms