Experiment set18IT084 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 200 mM; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_4136 +2.0 1.1 Transcriptional regulator, LuxR family compare
PP_2280 +1.8 2.5 conserved protein of unknown function compare
PP_5580 +1.6 2.7 protein of unknown function compare
PP_5393 +1.6 2.1 putative metal-binding chaperone compare
PP_5337 +1.5 5.1 LysR family transcriptional regulator compare
PP_5748 +1.4 1.3 cytochrome c heme lyase subunit compare
PP_4262 +1.4 1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4814 +1.3 2.2 ATP-dependent protease La domain protein compare
PP_3773 +1.3 1.2 conserved protein of unknown function compare
PP_0232 +1.3 2.0 ATP-binding taurine transporter subunit compare
PP_1455 +1.3 2.6 conserved protein of unknown function compare
PP_5486 +1.3 2.2 conserved protein of unknown function compare
PP_2088 +1.3 3.6 RNA polymerase sigma factor SigX compare
PP_1605 +1.3 2.1 Ribonuclease HII compare
PP_5359 +1.3 2.3 CobW/P47K family protein compare
PP_5328 +1.2 1.7 putative phosphate transport system permease protein compare
PP_0048 +1.2 1.7 conserved protein of unknown function compare
PP_0804 +1.2 4.8 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3840 +1.2 1.8 conserved protein of unknown function compare
PP_1005 +1.2 3.1 Heme oxygenase compare
PP_3808 +1.2 1.6 Antibiotic synthesis protein MbtH compare
PP_5666 +1.2 3.1 putative microcin B17-like processing protein, McbB family compare
PP_5473 +1.1 2.2 putative transcriptional regulator, LuxR family compare
PP_5582 +1.1 1.6 conserved protein of unknown function compare
PP_2899 +1.1 0.7 conserved exported protein of unknown function compare
PP_2765 +1.1 2.0 putative Sulfonate monooxygenase MsuD compare
PP_3580 +1.1 1.7 conserved protein of unknown function compare
PP_0948 +1.1 1.8 Phosphocarrier protein HPr compare
PP_0685 +1.1 1.4 conserved protein of unknown function compare
PP_3916 +1.1 1.9 conserved protein of unknown function compare
PP_4247 +1.1 1.8 Exonuclease compare
PP_2907 +1.1 1.8 DNA-binding response regulator compare
PP_3551 +1.0 1.6 DNA-binding response regulator, LuxR family compare
PP_5675 +1.0 4.3 conserved protein of unknown function compare
PP_0274 +1.0 1.5 putative transcriptional regulator containing HTH domain compare
PP_0574 +1.0 6.2 DNA-binding response regulator, LuxR family compare
PP_1269 +1.0 1.2 Universal stress protein family compare
PP_4690 +1.0 1.9 Rieske 2Fe-2S family protein compare
PP_3903 +1.0 2.1 conserved protein of unknown function compare
PP_1122 +1.0 1.4 OmpA family protein compare
PP_3874 +1.0 2.5 conserved protein of unknown function compare
PP_1215 +0.9 0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_2291 +0.9 1.9 conserved protein of unknown function compare
PP_5051 +0.9 2.1 conserved protein of unknown function compare
PP_3117 +0.9 1.0 putative protein involved in error-prone processing of DNA lesions compare
PP_2333 +0.9 2.8 GntR family transcriptional regulator compare
PP_1466 +0.9 3.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0806 +0.9 7.7 putative Surface adhesion protein compare
PP_2341 +0.9 0.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4541 +0.9 2.7 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_3946 +0.9 1.5 HTH-type transcriptional repressor NicR compare
PP_1349 +0.9 4.1 ATP:cob(I)alamin adenosyltransferase compare
PP_3738 +0.9 1.9 putative Transcriptional regulator VanR compare
PP_1702 +0.9 2.4 Recombination-associated protein RdgC compare
PP_0803 +0.9 4.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4396 +0.9 1.3 conserved protein of unknown function compare
PP_5430 +0.9 3.2 protein of unknown function compare
PP_0001 +0.9 1.3 probable chromosome-partitioning protein compare
PP_4642 +0.9 1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_3415 +0.8 2.4 Transcriptional regulator, LacI family conserved
PP_3685 +0.8 3.8 conserved protein of unknown function compare
PP_1503 +0.8 2.2 conserved protein of unknown function compare
PP_2903 +0.8 1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0194 +0.8 2.8 Transcriptional regulatory protein AlgP compare
PP_4941 +0.8 2.7 conserved exported protein of unknown function compare
PP_5517 +0.8 2.6 conserved exported protein of unknown function compare
PP_5705 +0.8 0.9 protein of unknown function compare
PP_1548 +0.8 1.8 conserved protein of unknown function compare
PP_2373 +0.8 2.3 conserved protein of unknown function compare
PP_0962 +0.8 1.5 toluene-tolerance protein compare
PP_2580 +0.8 1.0 conserved protein of unknown function compare
PP_4517 +0.8 1.0 conserved protein of unknown function compare
PP_0850 +0.8 3.2 Dual-specificity RNA methyltransferase RlmN compare
PP_3899 +0.8 1.8 conserved protein of unknown function, hicB family compare
PP_4697 +0.8 1.7 poly(A) polymerase compare
PP_4752 +0.8 2.9 putative Xaa-Pro aminopeptidase compare
PP_1909 +0.8 2.1 putative septum formation protein compare
PP_4600 +0.8 2.3 molybdenum cofactor biosynthesis protein B compare
PP_3904 +0.8 2.7 conserved protein of unknown function compare
PP_4449 +0.8 3.5 conserved protein of unknown function compare
PP_t10 +0.8 1.3 tRNA-Pro compare
PP_5712 +0.8 1.8 conserved protein of unknown function compare
PP_5315 +0.8 2.2 Rubredoxin-1 compare
PP_4268 +0.8 0.5 nucleoid-associated broad specificity regulator compare
PP_2794 +0.8 1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4343 +0.8 2.1 Flagellar biosynthesis protein FlhF compare
PP_0512 +0.8 1.1 hypothetical protein compare
PP_4109 +0.8 1.5 conserved protein of unknown function compare
PP_5659 +0.8 1.6 protein of unknown function compare
PP_1598 +0.8 2.4 regulatory intramembrane protein RIP zinc protease compare
PP_4905 +0.8 2.5 Flagellar motor rotation protein compare
PP_0355 +0.7 2.0 Response regulator compare
PP_2319 +0.7 1.5 conserved protein of unknown function compare
PP_2023 +0.7 1.9 Glutathione S-transferase family protein compare
PP_3866 +0.7 1.3 conserved protein of unknown function compare
PP_0126 +0.7 1.5 Cytochrome c4 compare
PP_2718 +0.7 1.1 arsenic resistance transcriptional regulator compare
PP_5084 +0.7 3.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1930 +0.7 1.9 arsenic resistance transcriptional regulator compare
PP_2793 +0.7 0.6 Acyl-CoA dehydrogenase family protein compare
PP_2330 +0.7 1.8 conserved protein of unknown function compare
PP_3726 +0.7 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_3344 +0.7 2.4 nickel ABC transporter permease subunit compare
PP_5495 +0.7 1.2 protein of unknown function compare
PP_5191 +0.7 1.2 conserved exported protein of unknown function compare
PP_1317 +0.7 2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5512 +0.7 1.8 protein of unknown function compare
PP_4590 +0.7 2.2 conserved protein of unknown function compare
PP_5505 +0.7 1.6 conserved transmembrane protein of unknown function compare
PP_1410 +0.7 0.6 conserved protein of unknown function compare
PP_1544 +0.7 2.3 conserved protein of unknown function compare
PP_2203 +0.7 1.0 conserved protein of unknown function compare
PP_4373 +0.7 5.2 Transcriptional regulator FleQ compare
PP_5145 +0.7 5.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4018 +0.7 1.3 Acetyltransferase, GNAT family compare
PP_2950 +0.7 1.7 conserved protein of unknown function compare
PP_4015 +0.7 2.9 HflD-like high frequency lysogenization protein compare
PP_0805 +0.7 3.4 Outer membrane efflux protein compare
PP_2075 +0.7 2.8 conserved membrane protein of unknown function compare
PP_3693 +0.7 1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1535 +0.7 1.5 putative Methyltransferase compare
PP_3883 +0.7 0.8 putative Phage holin compare
PP_2575 +0.7 0.9 conserved exported protein of unknown function compare
PP_2809 +0.7 2.4 conserved membrane protein of unknown function compare
PP_3792 +0.7 2.0 conserved protein of unknown function compare
PP_5073 +0.7 1.2 conserved exported protein of unknown function compare
PP_0901 +0.7 3.0 DNA-binding response regulator compare
PP_1054 +0.7 1.2 Type II secretion pathway protein XcpZ compare
PP_0735 +0.7 0.5 molybdopterin-synthase adenylyltransferase compare
PP_2435 +0.7 2.2 cysteine desulfurase compare
PP_4470 +0.7 2.3 putative transcriptional regulator (Arc domain-containing) compare
PP_3110 +0.7 1.1 protein of unknown function compare
PP_3328 +0.7 1.4 putative Ring-cleaving dioxygenase compare
PP_3365 +0.7 0.7 Acetolactate synthase compare
PP_0137 +0.7 3.1 glutamate/aspartate-proton DAACS transporter compare
PP_1516 +0.7 1.8 RND membrane fusion protein compare
PP_2401 +0.7 1.6 conserved membrane protein of unknown function compare
PP_5153 +0.7 2.1 putative isomerase/hydrolase compare
PP_4669 +0.7 1.4 OmpA family protein compare
PP_4844 +0.7 1.3 putative Urea ABC transporter, ATP-binding protein compare
PP_2653 +0.7 1.7 Transcriptional regulator, Cro/CI family compare
PP_2014 +0.7 2.8 conserved membrane protein of unknown function compare
PP_4947 +0.7 3.7 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_2768 +0.7 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1633 +0.7 1.5 conserved exported protein of unknown function compare
PP_0352 +0.7 2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2526 +0.6 1.5 conserved membrane protein of unknown function compare
PP_1075 +0.6 2.6 glycerol kinase compare
PP_5600 +0.6 1.6 conserved protein of unknown function compare
PP_0951 +0.6 2.3 Ribosome hibernation promoting factor compare
PP_4859 +0.6 1.9 Transcriptional regulator, TetR family compare
PP_2365 +0.6 1.7 Transcriptional regulator, AraC family compare
PP_4879 +0.6 1.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4409 +0.6 2.0 Site-specific recombinase, phage integrase family compare
PP_1864 +0.6 1.2 conserved protein of unknown function compare
PP_0770 +0.6 2.0 PemI-like protein compare
PP_1560 +0.6 2.0 conserved protein of unknown function compare
PP_4836 +0.6 1.5 conserved exported protein of unknown function compare
PP_5093 +0.6 0.8 twitching motility protein compare
PP_3519 +0.6 0.7 putative Lipoprotein compare
PP_3296 +0.6 2.8 putative transporter compare
PP_4551 +0.6 2.6 Hydrolase, alpha/beta fold family compare
PP_5144 +0.6 1.7 conserved protein of unknown function compare
PP_5053 +0.6 2.2 Protein-export protein SecB compare
PP_2421 +0.6 3.2 Acetyltransferase, GNAT family compare
PP_5571 +0.6 0.8 conserved protein of unknown function compare
PP_5202 +0.6 1.5 putative cell division protein compare
PP_5133 +0.6 1.7 conserved membrane protein of unknown function compare
PP_2978 +0.6 1.7 conserved protein of unknown function compare
PP_3908 +0.6 1.3 conserved protein of unknown function compare
PP_2002 +0.6 1.2 putative enzyme compare
PP_4253 +0.6 1.4 cytochrome c oxidase subunit, cbb3-type compare
PP_2572 +0.6 1.3 conserved protein of unknown function compare
PP_4391 +0.6 1.9 flagellar basal-body rod protein FlgB compare
PP_2340 +0.6 1.2 conserved protein of unknown function compare
PP_5686 +0.6 1.6 protein of unknown function compare
PP_2622 +0.6 1.0 conserved protein of unknown function compare
PP_2028 +0.6 1.9 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3559 +0.6 1.9 glycine betaine ABC transporter (permease) compare
PP_2385 +0.6 2.3 Branched-chain amino acid transport protein AzlC compare
PP_5456 +0.6 0.6 conserved protein of unknown function compare
PP_2475 +0.6 1.7 Transcriptional regulator, TetR family compare
PP_5224 +0.6 1.5 conserved protein of unknown function compare
PP_3735 +0.6 2.0 ABC transporter ATP-binding protein compare
PP_3209 +0.6 3.2 Isoxanthopterin deaminase compare
PP_2951 +0.6 1.4 Transcriptional regulator, TetR family compare
PP_3061 +0.6 1.3 conserved protein of unknown function compare
PP_2691 +0.6 1.8 conserved protein of unknown function compare
PP_4208 +0.6 1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3407 +0.6 0.9 conserved protein of unknown function compare
PP_1755 +0.6 2.6 fumarate hydratase (class 2) compare
PP_5508 +0.6 0.7 conserved protein of unknown function compare
PP_2759 +0.6 0.8 ribose ABC transporter - ATP-binding subunit compare
PP_0566 +0.6 0.7 translation-related factor compare
PP_4464 +0.6 1.4 Transcriptional regulator, LysR family compare
PP_5001 +0.6 1.1 protease HslVU, ATPase component compare
PP_1193 +0.6 1.2 conserved membrane protein of unknown function compare
PP_0984 +0.6 1.3 conserved membrane protein of unknown function compare
PP_1812 +0.6 0.8 conserved protein of unknown function compare
PP_5480 +0.6 1.9 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress D-Glucose across organisms