Experiment set18IT072 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -6.0 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_3241 -5.8 -1.5 conserved exported protein of unknown function compare
PP_0184 -5.7 -5.5 Argininosuccinate lyase compare
PP_0967 -5.2 -9.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -5.2 -6.4 Ornithine carbamoyltransferase compare
PP_0082 -5.1 -7.7 tryptophan synthase alpha chain compare
PP_3519 -5.0 -1.3 putative Lipoprotein compare
PP_4994 -5.0 -5.6 conserved protein of unknown function compare
PP_3511 -4.8 -8.2 Branched-chain-amino-acid aminotransferase compare
PP_5717 -4.6 -3.0 conserved protein of unknown function compare
PP_4678 -4.6 -13.4 Ketol-acid reductoisomerase compare
PP_0593 -4.6 -1.2 putative ribosome-binding factor compare
PP_5317 -4.4 -3.9 Probable chorismate pyruvate-lyase compare
PP_4680 -4.3 -13.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1176 -4.3 -2.7 conserved protein of unknown function compare
PP_1985 -4.3 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0083 -4.2 -7.5 tryptophan synthase beta chain compare
PP_5098 -4.2 -6.3 methionine biosynthesis protein MetW compare
PP_0421 -4.1 -7.0 Anthranilate phosphoribosyltransferase compare
PP_5348 -4.1 -8.1 Transcriptional regulator, LysR family compare
PP_4804 -4.1 -2.8 RlpA-like lipoprotein compare
PP_5303 -4.1 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0290 -4.1 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4696 -4.0 -6.7 Nitrogen regulation protein NR(I) compare
PP_5347 -4.0 -10.5 pyruvate carboxylase subunit A compare
PP_0846 -4.0 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_4828 -3.9 -1.5 Precorrin-8X methylmutase compare
PP_4890 -3.9 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -3.9 -6.2 Dihydroxy-acid dehydratase compare
PP_0965 -3.8 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1022 -3.8 -5.2 glucose 6-phosphate-1-dehydrogenase compare
PP_4909 -3.8 -7.6 phosphoserine phosphatase compare
PP_5155 -3.8 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1988 -3.8 -6.5 3-isopropylmalate dehydrogenase compare
PP_5097 -3.7 -8.5 homoserine O-acetyltransferase compare
PP_3999 -3.7 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2327 -3.4 -4.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5346 -3.4 -6.7 pyruvate carboxylase subunit B compare
PP_2168 -3.3 -8.3 Transaldolase compare
PP_5185 -3.3 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4126 -3.2 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_1088 -3.2 -8.0 Argininosuccinate synthase compare
PP_4679 -3.2 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -3.1 -2.8 Indole-3-glycerol phosphate synthase compare
PP_2328 -3.1 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -3.1 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1898 -3.1 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_2001 -3.0 -6.4 O-succinylhomoserine sulfhydrylase compare
PP_0366 -3.0 -4.4 dethiobiotin synthetase compare
PP_0292 -3.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0420 -3.0 -7.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -3.0 -9.9 Anthranilate synthase component 1 compare
PP_1025 -2.9 -7.6 2-isopropylmalate synthase compare
PP_1231 -2.9 -5.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0966 -2.8 -5.2 Histidinol dehydrogenase compare
PP_3892 -2.8 -1.4 conserved protein of unknown function compare
PP_2530 -2.8 -2.7 conserved protein of unknown function compare
PP_2371 -2.7 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -2.5 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_2145 -2.5 -2.7 beta-N-acetylglucosaminidase compare
PP_5095 -2.4 -1.3 pyrroline-5-carboxylate reductase compare
PP_5203 -2.4 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_2144 -2.4 -4.3 Transcriptional regulator, TetR family compare
PP_4984 -2.4 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0164 -2.4 -4.6 conserved protein of unknown function compare
PP_3392 -2.4 -1.7 conserved protein of unknown function compare
PP_0289 -2.3 -4.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5625 -2.3 -4.1 conserved protein of unknown function compare
PP_0362 -2.3 -5.9 Biotin synthase compare
PP_5610 -2.3 -1.8 protein of unknown function compare
PP_5289 -2.3 -3.3 Acetylglutamate kinase compare
PP_5015 -2.2 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3409 -2.2 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_0787 -2.2 -3.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0291 -2.1 -2.0 conserved protein of unknown function compare
PP_5022 -2.1 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_2878 -2.1 -2.4 conserved protein of unknown function compare
PP_4247 -2.1 -1.6 Exonuclease compare
PP_5217 -2.1 -5.3 Polyphosphate kinase compare
PP_1783 -2.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4130 -2.1 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1664 -2.0 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1672 -2.0 -3.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3398 -2.0 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0001 -2.0 -1.8 probable chromosome-partitioning protein compare
PP_4782 -2.0 -3.1 Phosphomethylpyrimidine kinase compare
PP_4517 -1.9 -1.8 conserved protein of unknown function compare
PP_4785 -1.9 -2.8 conserved exported protein of unknown function compare
PP_5328 -1.9 -2.2 putative phosphate transport system permease protein compare
PP_1352 -1.9 -1.7 UPF0234 protein PP_1352 compare
PP_0874 -1.8 -2.5 conserved protein of unknown function compare
PP_4787 -1.8 -2.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3110 -1.8 -1.7 protein of unknown function compare
PP_0434 -1.7 -2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0547 -1.7 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4480 -1.7 -5.1 arginine N-succinyltransferase, subunit alpha compare
PP_4268 -1.7 -1.2 nucleoid-associated broad specificity regulator compare
PP_2370 -1.7 -1.4 conserved protein of unknown function compare
PP_3580 -1.7 -2.0 conserved protein of unknown function compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_1654 -1.6 -2.6 cysteine synthase B compare
PP_0725 -1.6 -3.4 conserved hypothetical TPR repeat protein compare
PP_4124 -1.6 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_5230 -1.6 -2.2 Tyrosine recombinase XerC compare
PP_0750 -1.6 -3.4 conserved protein of unknown function compare
PP_1829 -1.6 -1.7 Hydrolase, alpha/beta fold family compare
PP_5486 -1.6 -1.6 conserved protein of unknown function compare
PP_1269 -1.5 -1.0 Universal stress protein family compare
PP_2857 -1.5 -1.6 conserved exported protein of unknown function compare
PP_1763 -1.5 -1.5 putative oxidoreductase compare
PP_0979 -1.5 -2.7 DNA polymerase III subunit chi compare
PP_1912 -1.5 -2.3 Phosphate acyltransferase compare
PP_1733 -1.5 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4131 -1.5 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_5075 -1.4 -6.0 glutamate synthase (NADPH) beta subunit compare
PP_2747 -1.4 -1.6 conserved protein of unknown function compare
PP_1099 -1.4 -1.5 Cold shock protein CapB compare
PP_3946 -1.4 -1.1 HTH-type transcriptional repressor NicR compare
PP_5007 -1.4 -1.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5310 -1.4 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_1528 -1.4 -1.2 conserved protein of unknown function compare
PP_4964 -1.4 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2459 -1.4 -2.7 ribose pyranase compare
PP_5350 -1.4 -2.0 Transcriptional regulator, RpiR family compare
PP_2756 -1.4 -2.7 conserved protein of unknown function compare
PP_5076 -1.4 -7.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0365 -1.4 -3.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1548 -1.3 -2.0 conserved protein of unknown function compare
PP_t29 -1.3 -1.4 tRNA-Ala compare
PP_1673 -1.3 -2.7 cobyrinate a,c-diamide synthase compare
PP_1426 -1.3 -5.3 L-aspartate oxidase compare
PP_4792 -1.3 -1.4 conserved exported protein of unknown function compare
PP_5393 -1.3 -1.1 putative metal-binding chaperone compare
PP_2390 -1.3 -3.1 Transcriptional regulator, LysR family compare
PP_0262 -1.3 -2.4 conserved protein of unknown function compare
PP_2511 -1.3 -2.2 conserved protein of unknown function compare
PP_1676 -1.3 -2.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0363 -1.3 -4.3 8-amino-7-oxononanoate synthase compare
PP_1128 -1.3 -2.6 OmpA family protein compare
PP_4546 -1.3 -2.8 ATP-dependent helicase HrpA compare
PP_1656 -1.3 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_5546 -1.3 -1.1 conserved protein of unknown function compare
PP_2388 -1.3 -1.6 Transporter, LysE family compare
PP_3048 -1.3 -2.3 conserved protein of unknown function compare
PP_2375 -1.3 -5.8 cobalamin-dependent methionine synthase compare
PP_2088 -1.2 -1.3 RNA polymerase sigma factor SigX compare
PP_1675 -1.2 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5594 -1.2 -1.4 conserved protein of unknown function compare
PP_0513 -1.2 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1679 -1.2 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2197 -1.2 -3.0 conserved exported protein of unknown function compare
PP_1362 -1.2 -1.8 pyruvate kinase II compare
PP_5083 -1.2 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_2622 -1.2 -1.3 conserved protein of unknown function compare
PP_5227 -1.2 -3.4 diaminopimelate decarboxylase compare
PP_2499 -1.2 -1.0 conserved protein of unknown function compare
PP_2504 -1.2 -0.9 putative tautomerase K2 compare
PP_1926 -1.2 -1.3 putative phosphotyrosine-protein phosphatase compare
PP_3094 -1.2 -2.1 conserved exported protein of unknown function compare
PP_3164 -1.2 -2.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1739 -1.1 -1.5 conserved membrane protein of unknown function compare
PP_3919 -1.1 -1.1 conserved protein of unknown function compare
PP_1001 -1.1 -1.9 arginine deiminase compare
PP_4693 -1.1 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_5058 -1.1 -2.0 Carboxy-terminal-processing protease compare
PP_1734 -1.1 -2.0 Probable septum site-determining protein MinC compare
PP_1441 -1.1 -1.8 tRNA (cmo5U34)-methyltransferase compare
PP_4826 -1.1 -3.2 Precorrin-3B C17-methyltransferase compare
PP_3449 -1.1 -1.5 conserved exported protein of unknown function compare
PP_5294 -1.1 -2.4 Ribonuclease PH compare
PP_3276 -1.1 -1.8 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_3417 -1.1 -2.5 D-gluconate transporter compare
PP_2378 -1.1 -1.3 Fe/S biogenesis protein NfuA compare
PP_4937 -1.1 -1.5 toluene tolerance protein compare
PP_1764 -1.1 -1.4 Phosphoglycolate phosphatase 2 compare
PP_1655 -1.1 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2087 -1.1 -1.5 CmpX protein compare
PP_4364 -1.0 -1.3 putative Anti-sigma F factor antagonist compare
PP_3506 -1.0 -1.9 Magnesium chelatase, subunit ChII compare
PP_1110 -1.0 -1.5 serine acetyltransferase compare
PP_2846 -1.0 -1.6 urease accessory protein compare
PP_4961 -1.0 -1.3 putative Lipoprotein compare
PP_2903 -1.0 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5575 -1.0 -1.2 conserved protein of unknown function compare
PP_2433 -1.0 -0.9 conserved protein of unknown function compare
PP_3507 -1.0 -4.7 Aerobic cobaltochelatase subunit CobN compare
PP_0683 -1.0 -1.2 conserved protein of unknown function compare
PP_3935 -1.0 -1.1 conserved protein of unknown function compare
PP_2581 -1.0 -1.1 conserved protein of unknown function compare
PP_1629 -1.0 -2.6 Protein RecA compare
PP_1000 -1.0 -1.8 ornithine carbamoyltransferase, catabolic compare
PP_0848 -1.0 -1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0958 -1.0 -2.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0872 -1.0 -2.5 Peptide chain release factor 3 compare
PP_0319 -1.0 -0.8 conserved protein of unknown function compare
PP_3280 -1.0 -2.6 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_3850 -1.0 -2.8 conserved protein of unknown function compare
PP_5448 -1.0 -1.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms