Experiment set18IT072 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_4136 +2.5 3.3 Transcriptional regulator, LuxR family compare
PP_5445 +1.4 3.4 conserved protein of unknown function compare
PP_0834 +1.3 1.9 Sec translocation complex subunit YajC compare
PP_0276 +1.2 1.6 Transcriptional regulator, Cro/CI family compare
PP_3447 +1.2 1.5 conserved membrane protein of unknown function compare
PP_2847 +1.2 1.6 Urease accessory protein UreJ compare
PP_3198 +1.1 2.4 Ferredoxin, 2Fe-2S compare
PP_5495 +1.1 2.0 protein of unknown function compare
PP_0916 +1.1 2.0 Amino acid transporter LysE compare
PP_5453 +1.1 0.9 conserved protein of unknown function compare
PP_2575 +1.0 1.8 conserved exported protein of unknown function compare
PP_0948 +1.0 1.8 Phosphocarrier protein HPr compare
PP_5241 +1.0 2.2 DNA-binding response regulator, LuxR family compare
PP_4701 +1.0 1.2 glucose-6-phosphate isomerase compare
PP_4133 +1.0 1.9 Transcriptional regulator-related protein compare
PP_2291 +1.0 1.7 conserved protein of unknown function compare
PP_4094 +1.0 1.4 conserved protein of unknown function compare
PP_0556 +1.0 3.7 Acetoin catabolism protein compare
PP_0152 +1.0 1.0 conserved exported protein of unknown function compare
PP_0905 +1.0 1.8 conserved exported protein of unknown function compare
PP_2121 +0.9 1.7 putative Lipoprotein compare
PP_1113 +0.9 6.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3810 +0.9 2.0 conserved protein of unknown function compare
PP_1556 +0.9 1.6 conserved protein of unknown function compare
PP_5017 +0.9 1.2 Sec-independent protein translocase protein TatB compare
PP_4531 +0.9 2.0 conserved exported protein of unknown function compare
PP_3411 +0.9 1.5 conserved protein of unknown function compare
PP_1005 +0.9 2.8 Heme oxygenase compare
PP_0804 +0.9 5.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4214 +0.9 2.7 pyoverdine biosynthesis related protein compare
PP_0332 +0.9 1.9 putative Acyltransferase compare
PP_3052 +0.9 1.1 conserved protein of unknown function compare
PP_4555 +0.9 2.5 conserved protein of unknown function compare
PP_3874 +0.9 2.3 conserved protein of unknown function compare
PP_4944 +0.9 2.3 Carbamoyltransferase compare
PP_3926 +0.9 0.8 short-chain dehydrogenase compare
PP_5702 +0.9 1.5 conserved protein of unknown function compare
PP_5604 +0.8 1.3 putative subtilisin-like serine protease compare
PP_4870 +0.8 1.6 Azurin compare
PP_1062 +0.8 2.0 MutT/nudix family protein compare
PP_0630 +0.8 1.0 DNA gyrase inhibitor YacG compare
PP_1207 +0.8 1.7 conserved protein of unknown function compare
PP_4227 +0.8 1.6 conserved protein of unknown function compare
PP_0167 +0.8 7.0 Toxin secretion ATP-binding protein compare
PP_3808 +0.8 0.6 Antibiotic synthesis protein MbtH compare
PP_0355 +0.8 2.7 Response regulator compare
PP_0168 +0.8 6.6 putative surface adhesion protein compare
PP_1322 +0.8 1.5 putative Lipoprotein compare
PP_0805 +0.8 3.8 Outer membrane efflux protein compare
PP_4018 +0.8 2.2 Acetyltransferase, GNAT family compare
PP_1482 +0.8 1.9 polyamine ABC transporter, permease protein compare
PP_0770 +0.8 1.2 PemI-like protein compare
PP_0246 +0.8 1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_3234 +0.8 1.9 Heat shock protein, HSP20 family compare
PP_0440 +0.8 1.5 Elongation factor Tu-A compare
PP_1004 +0.7 2.0 conserved protein of unknown function compare
PP_5633 +0.7 2.7 conserved protein of unknown function compare
PP_4266 +0.7 1.6 Adenine phosphoribosyltransferase compare
PP_4682 +0.7 3.5 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4271 +0.7 0.8 conserved protein of unknown function compare
PP_1862 +0.7 2.6 conserved membrane protein of unknown function compare
PP_2318 +0.7 2.5 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_2550 +0.7 1.2 putative transcriptional regulatory protein compare
PP_3471 +0.7 2.4 conserved protein of unknown function compare
PP_4997 +0.7 1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3315 +0.7 1.8 conserved membrane protein of unknown function compare
PP_3143 +0.7 2.0 Transcriptional regulator, LysR family compare
PP_2873 +0.7 2.9 conserved protein of unknown function, UPF0145 family compare
PP_5441 +0.7 1.6 protein of unknown function compare
PP_3408 +0.7 2.4 cobalt transporter subunit A compare
PP_4317 +0.7 1.9 conserved protein of unknown function compare
PP_1513 +0.7 1.8 Ribosomal RNA small subunit methyltransferase J compare
PP_4769 +0.7 1.8 conserved protein of unknown function compare
PP_4504 +0.7 1.2 conserved exported protein of unknown function compare
PP_0803 +0.7 4.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4721 +0.7 1.9 conserved membrane protein of unknown function compare
PP_2127 +0.7 1.8 Sensor histidine kinase compare
PP_0640 +0.7 2.0 conserved protein of unknown function compare
PP_5298 +0.7 1.9 putative glutamine amidotransferase compare
PP_3314 +0.7 1.6 Heat shock protein, HSP20 family compare
PP_5705 +0.7 0.8 protein of unknown function compare
PP_5331 +0.7 1.3 Long-chain acyl-CoA thioester hydrolase compare
PP_5249 +0.7 3.4 Transcriptional regulator, LysR family compare
PP_4814 +0.7 1.5 ATP-dependent protease La domain protein compare
PP_1292 +0.7 2.3 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_3840 +0.7 1.0 conserved protein of unknown function compare
PP_1512 +0.7 1.3 conserved protein of unknown function compare
PP_4159 +0.7 1.2 Potassium-transporting ATPase C chain compare
PP_2583 +0.7 3.3 Acetyltransferase, GNAT family compare
PP_4373 +0.7 4.8 Transcriptional regulator FleQ compare
PP_5053 +0.7 3.1 Protein-export protein SecB compare
PP_2737 +0.7 0.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3473 +0.7 1.8 curli secretion and assembly outer membrane associated component compare
PP_2280 +0.6 1.2 conserved protein of unknown function compare
PP_3771 +0.6 2.1 conserved protein of unknown function compare
PP_5133 +0.6 2.7 conserved membrane protein of unknown function compare
PP_t12 +0.6 0.7 tRNA-Thr compare
PP_2610 +0.6 3.0 conserved protein of unknown function compare
PP_5258 +0.6 2.8 L-piperidine-6-carboxylate dehydrogenase compare
PP_5027 +0.6 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4358 +0.6 3.0 flagellar synthesis, switching and energizing component compare
PP_2793 +0.6 1.5 Acyl-CoA dehydrogenase family protein compare
PP_3303 +0.6 2.0 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_0998 +0.6 1.9 conserved protein of unknown function compare
PP_3876 +0.6 1.4 conserved protein of unknown function compare
PP_0621 +0.6 1.6 conserved protein of unknown function compare
PP_5023 +0.6 2.2 Amino acid ABC transporter, permease protein compare
PP_2716 +0.6 1.1 arsenate reductase compare
PP_0632 +0.6 2.1 leader peptidase/N-methyltransferase compare
PP_1845 +0.6 1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4413 +0.6 2.1 conserved protein of unknown function compare
PP_4343 +0.6 3.1 Flagellar biosynthesis protein FlhF compare
PP_4199 +0.6 0.7 putative Lipoprotein compare
PP_2417 +0.6 1.2 putative Iron ABC transporter, permease protein compare
PP_0166 +0.6 4.5 HlyD family secretion protein compare
PP_4112 +0.6 3.3 Sulphate transporter compare
PP_2311 +0.6 1.5 Mg-dependent cytoplasmic DNase / RNase compare
PP_3951 +0.6 2.4 3-oxoadipate CoA-transferase subunit A compare
PP_5572 +0.6 1.4 protein of unknown function compare
PP_3295 +0.6 2.3 YeeE/YedE family protein compare
PP_1122 +0.6 0.7 OmpA family protein compare
PP_0113 +0.6 2.0 methionine ABC transporter, permease protein compare
PP_3467 +0.6 2.5 Sigma-54 dependent transcriptional regulator compare
PP_1683 +0.6 0.9 Transcriptional regulator, MarR family compare
PP_2122 +0.6 1.3 molybdenum cofactor biosynthesis protein B compare
PP_1002 +0.6 1.8 arginine/ornithine antiporter compare
PP_1583 +0.6 2.0 putative Structural protein P5 compare
PP_4538 +0.6 2.4 FMN-dependent NADH-azoreductase 2 compare
PP_0089 +0.6 2.0 stress-induced peroxiredoxin, lipoyl-dependent peroxidase compare
PP_3763 +0.6 2.4 putative CobF protein compare
PP_3201 +0.6 1.3 BNR domain protein compare
PP_0244 +0.6 2.2 conserved protein of unknown function compare
PP_4354 +0.6 1.2 flagellar export apparatus subunit compare
PP_2836 +0.6 1.7 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4367 +0.6 2.4 Flagellar assembly protein FliH compare
PP_0040 +0.6 1.5 hypothetical protein compare
PP_4759 +0.6 2.8 transcriptional regulator, GntR family compare
PP_2309 +0.6 0.8 conserved protein of unknown function compare
PP_3523 +0.6 1.3 conserved protein of unknown function compare
PP_2138 +0.6 1.7 conserved protein of unknown function compare
PP_3415 +0.6 2.8 Transcriptional regulator, LacI family compare
PP_5706 +0.6 0.7 Sec translocation complex - SecG subunit compare
PP_3646 +0.6 2.3 Aldehyde dehydrogenase family protein compare
PP_0806 +0.6 5.1 putative Surface adhesion protein compare
PP_2235 +0.6 1.9 conserved protein of unknown function compare
PP_5121 +0.6 0.9 conserved exported protein of unknown function compare
PP_4764 +0.6 2.6 Histone deacetylase family protein compare
PP_3803 +0.6 2.1 putative Cation ABC transporter, permease protein compare
PP_3823 +0.6 1.8 Cytochrome c-type protein compare
PP_4171 +0.6 5.0 conserved exported protein of unknown function compare
PP_5146 +0.6 3.0 RNA pyrophosphohydrolase compare
PP_1787 +0.6 1.8 conserved protein of unknown function compare
PP_5565 +0.6 1.6 conserved protein of unknown function compare
PP_5145 +0.6 4.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3505 +0.6 1.1 conserved protein of unknown function compare
PP_0585 +0.6 1.1 putative metal-sensitive transcriptional regulator, MerR family compare
PP_3243 +0.6 1.1 Acetyltransferase, GNAT family compare
PP_0361 +0.6 1.4 putative Competence protein ComF compare
PP_2858 +0.6 1.7 conserved exported protein of unknown function compare
PP_2907 +0.6 0.9 DNA-binding response regulator compare
PP_0294 +0.6 2.2 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_2102 +0.6 2.9 Deoxyguanosinetriphosphate triphosphohydrolase-like protein compare
PP_1909 +0.6 1.5 putative septum formation protein compare
PP_2383 +0.6 2.3 Transcriptional regulator, AraC family compare
PP_1290 +0.5 3.2 polysaccharide deacetylase family protein compare
PP_0711 +0.5 0.9 putative hydrolase compare
PP_3049 +0.5 2.1 conserved protein of unknown function compare
PP_4084 +0.5 2.4 conserved protein of unknown function compare
PP_1410 +0.5 0.5 conserved protein of unknown function compare
PP_3531 +0.5 1.2 conserved exported protein of unknown function compare
PP_4690 +0.5 1.3 Rieske 2Fe-2S family protein compare
PP_1102 +0.5 1.4 conserved protein of unknown function compare
PP_4985 +0.5 2.1 16S rRNA m3U1498 methyltransferase compare
PP_3964 +0.5 1.9 transposase compare
PP_0945 +0.5 1.8 conserved protein of unknown function compare
PP_1261 +0.5 1.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_1623 +0.5 2.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_3312 +0.5 0.9 putative Heat shock protein compare
PP_5638 +0.5 1.8 conserved protein of unknown function compare
PP_3963 +0.5 1.0 conserved protein of unknown function compare
PP_3191 +0.5 1.8 putative threonine ammonia-lyase / dehydratase compare
PP_2307 +0.5 0.4 conserved protein of unknown function compare
PP_2387 +0.5 1.5 conserved protein of unknown function compare
PP_2705 +0.5 0.9 conserved protein of unknown function compare
PP_1466 +0.5 1.7 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1238 +0.5 1.8 putative Lipoprotein compare
PP_5556 +0.5 1.5 putative bacteriophage lysis protein compare
PP_5337 +0.5 1.6 LysR family transcriptional regulator compare
PP_1396 +0.5 1.1 conserved protein of unknown function compare
PP_5659 +0.5 1.2 protein of unknown function compare
PP_2772 +0.5 1.4 putative Monooxygenase compare
PP_3122 +0.5 2.6 acetoacetyl CoA-transferase (subunit A) compare
PP_2333 +0.5 1.4 GntR family transcriptional regulator compare
PP_3773 +0.5 0.8 conserved protein of unknown function compare
PP_1328 +0.5 1.2 Protein MraZ compare
PP_0491 +0.5 2.2 formate dehydrogenase-O, gamma subunit compare
PP_0265 +0.5 2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
PP_2817 +0.5 2.4 Multidrug efflux RND membrane fusion protein MexC compare
PP_0574 +0.5 3.2 DNA-binding response regulator, LuxR family compare
PP_2976 +0.5 0.6 putative transposase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms