Experiment set18IT069 for Pseudomonas putida KT2440

Compare to:

Urea nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_5048 -7.2 -5.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5027 -6.8 -2.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1985 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_4679 -6.2 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -5.7 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -5.6 -3.9 Acetylglutamate kinase compare
PP_5346 -5.5 -8.5 pyruvate carboxylase subunit B compare
PP_0082 -5.5 -5.4 tryptophan synthase alpha chain compare
PP_2168 -5.3 -11.0 Transaldolase compare
PP_0152 -5.2 -2.9 conserved exported protein of unknown function compare
PP_0566 -5.1 -1.2 translation-related factor compare
PP_2327 -5.1 -5.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3511 -5.0 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_5347 -4.7 -12.5 pyruvate carboxylase subunit A compare
PP_4701 -4.6 -1.1 glucose-6-phosphate isomerase compare
PP_5075 -4.6 -12.0 glutamate synthase (NADPH) beta subunit compare
PP_1216 -4.5 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0184 -4.5 -8.2 Argininosuccinate lyase compare
PP_0083 -4.4 -7.3 tryptophan synthase beta chain compare
PP_3999 -4.4 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5098 -4.4 -7.3 methionine biosynthesis protein MetW compare
PP_0966 -4.3 -9.0 Histidinol dehydrogenase compare
PP_2403 -4.2 -1.4 Chemotaxis protein CheY compare
PP_5348 -4.2 -5.8 Transcriptional regulator, LysR family compare
PP_2328 -4.2 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_5076 -4.1 -13.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_4994 -4.1 -5.4 conserved protein of unknown function compare
PP_1988 -4.1 -6.7 3-isopropylmalate dehydrogenase compare
PP_4268 -4.1 -1.4 nucleoid-associated broad specificity regulator compare
PP_4902 -4.1 -2.8 Oligoribonuclease compare
PP_1022 -4.1 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5015 -4.0 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5008 -4.0 -1.4 Poly granule-associated protein compare
PP_0290 -4.0 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0846 -3.9 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_2217 -3.9 -3.3 enoyl-CoA hydratase compare
PP_1088 -3.9 -10.0 Argininosuccinate synthase compare
PP_5456 -3.7 -1.2 conserved protein of unknown function compare
PP_0293 -3.7 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -3.7 -8.5 Ketol-acid reductoisomerase compare
PP_5058 -3.7 -7.1 Carboxy-terminal-processing protease compare
PP_4364 -3.7 -2.7 putative Anti-sigma F factor antagonist compare
PP_1986 -3.6 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_5097 -3.6 -8.6 homoserine O-acetyltransferase compare
PP_2378 -3.6 -2.5 Fe/S biogenesis protein NfuA compare
PP_1079 -3.6 -4.0 Ornithine carbamoyltransferase compare
PP_0292 -3.6 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -3.6 -6.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3902 -3.5 -2.4 conserved protein of unknown function compare
PP_5000 -3.5 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_1186 -3.4 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_2371 -3.4 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -3.4 -4.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4696 -3.3 -5.6 Nitrogen regulation protein NR(I) compare
PP_1654 -3.2 -3.7 cysteine synthase B compare
PP_2402 -3.2 -2.9 putative Sensor histidine kinase compare
PP_4890 -3.1 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1237 -3.1 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0888 -3.1 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0365 -3.1 -5.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4126 -3.1 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_2001 -3.1 -5.4 O-succinylhomoserine sulfhydrylase compare
PP_2370 -3.1 -2.9 conserved protein of unknown function compare
PP_1362 -3.1 -4.9 pyruvate kinase II compare
PP_0417 -3.1 -9.4 Anthranilate synthase component 1 compare
PP_0949 -3.0 -6.0 putative ATP-binding protein UPF0042 compare
PP_4680 -3.0 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -3.0 -6.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5604 -3.0 -1.6 putative subtilisin-like serine protease compare
PP_5303 -3.0 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0965 -3.0 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5748 -3.0 -1.0 cytochrome c heme lyase subunit compare
PP_3505 -2.9 -2.0 conserved protein of unknown function compare
PP_3532 -2.9 -1.8 Transcriptional regulator, AsnC family compare
PP_0789 -2.7 -3.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5350 -2.7 -4.0 Transcriptional regulator, RpiR family compare
PP_1025 -2.7 -7.2 2-isopropylmalate synthase compare
PP_1813 -2.7 -2.0 ComEA-related protein compare
PP_0363 -2.7 -6.5 8-amino-7-oxononanoate synthase compare
PP_3840 -2.6 -1.4 conserved protein of unknown function compare
PP_1673 -2.6 -4.2 cobyrinate a,c-diamide synthase compare
PP_0421 -2.6 -4.1 Anthranilate phosphoribosyltransferase compare
PP_5533 -2.6 -1.5 conserved protein of unknown function compare
PP_3241 -2.6 -1.4 conserved exported protein of unknown function compare
PP_1995 -2.6 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4699 -2.5 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0422 -2.5 -2.3 Indole-3-glycerol phosphate synthase compare
PP_0366 -2.5 -4.6 dethiobiotin synthetase compare
PP_5393 -2.5 -1.4 putative metal-binding chaperone compare
PP_4977 -2.5 -5.5 5,10-methylenetetrahydrofolate reductase compare
PP_0362 -2.5 -6.3 Biotin synthase compare
PP_4785 -2.4 -5.0 conserved exported protein of unknown function compare
PP_1912 -2.4 -3.6 Phosphate acyltransferase compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_4909 -2.4 -4.6 phosphoserine phosphatase compare
PP_1898 -2.3 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5095 -2.3 -1.1 pyrroline-5-carboxylate reductase compare
PP_1128 -2.3 -3.1 OmpA family protein compare
PP_2880 -2.3 -1.5 Transcriptional regulator, TetR family compare
PP_0787 -2.3 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0003 -2.2 -2.4 16S RNA methyltransferase compare
PP_0364 -2.2 -4.0 pimeloyl-[acp] methyl ester esterase compare
PP_3946 -2.2 -1.3 HTH-type transcriptional repressor NicR compare
PP_4804 -2.2 -2.9 RlpA-like lipoprotein compare
PP_4131 -2.2 -6.2 NADH-quinone oxidoreductase subunit N compare
PP_5014 -2.1 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2765 -2.1 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_0832 -2.1 -3.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5331 -2.1 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_5217 -2.1 -5.1 Polyphosphate kinase compare
PP_4782 -2.1 -2.6 Phosphomethylpyrimidine kinase compare
PP_1454 -2.0 -2.4 conserved protein of unknown function compare
PP_4546 -2.0 -4.0 ATP-dependent helicase HrpA compare
PP_5155 -2.0 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4555 -2.0 -1.3 conserved protein of unknown function compare
PP_3020 -2.0 -1.3 putative Serine/threonine protein phosphatase compare
PP_1826 -2.0 -1.8 Hydrolase, isochorismatase family compare
PP_2336 -2.0 -3.9 aconitate hydratase 1 compare
PP_4517 -2.0 -1.6 conserved protein of unknown function compare
PP_1589 -1.9 -5.0 uridylyltransferase compare
PP_4226 -1.9 -1.8 conserved protein of unknown function compare
PP_0164 -1.9 -3.8 conserved protein of unknown function compare
PP_3447 -1.9 -1.0 conserved membrane protein of unknown function compare
PP_1142 -1.9 -0.9 conserved protein of unknown function compare
PP_0195 -1.9 -2.0 conserved protein of unknown function compare
PP_4824 -1.9 -5.2 Sensor histidine kinase/response regulator compare
PP_0406 -1.9 -2.3 Nucleotidyltransferase family protein compare
PP_3506 -1.9 -1.7 Magnesium chelatase, subunit ChII compare
PP_5047 -1.9 -3.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4984 -1.8 -3.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1713 -1.8 -1.4 Transcriptional regulator PcaQ compare
PP_4332 -1.8 -2.3 Chemotaxis protein CheW compare
PP_3164 -1.8 -1.7 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2793 -1.8 -1.5 Acyl-CoA dehydrogenase family protein compare
PP_5094 -1.8 -2.5 putative enzyme with PLP binding domain compare
PP_1824 -1.8 -1.3 Smr domain protein compare
PP_5128 -1.8 -3.7 Dihydroxy-acid dehydratase compare
PP_4066 -1.7 -1.8 methylglutaconyl-CoA hydratase compare
PP_3539 -1.7 -1.1 putative Transcriptional regulator compare
PP_t11 -1.7 -1.6 tRNA-Lys compare
PP_1303 -1.7 -2.7 Sulfate adenylyltransferase subunit 2 compare
PP_1679 -1.7 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1178 -1.7 -1.0 conserved protein of unknown function compare
PP_5491 -1.6 -1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_2388 -1.6 -2.3 Transporter, LysE family compare
PP_2214 -1.6 -2.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5279 -1.6 -1.5 conserved protein of unknown function compare
PP_5496 -1.6 -1.4 conserved exported protein of unknown function compare
PP_3417 -1.6 -2.2 D-gluconate transporter compare
PP_4199 -1.6 -0.9 putative Lipoprotein compare
PP_0833 -1.6 -1.0 queuine tRNA-ribosyltransferase compare
PP_3808 -1.6 -1.2 Antibiotic synthesis protein MbtH compare
PP_4930 -1.6 -2.4 putative small multidrug resistance protein compare
PP_0905 -1.6 -0.9 conserved exported protein of unknown function compare
PP_2800 -1.6 -1.7 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_2681 -1.6 -1.2 coenzyme PQQ synthesis protein D compare
PP_5203 -1.5 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_4379 -1.5 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2337 -1.5 -2.2 aconitate isomerase compare
PP_2110 -1.5 -2.2 putative ribosomal large subunit pseudouridine synthase compare
PP_1528 -1.5 -1.0 conserved protein of unknown function compare
PP_3048 -1.5 -1.4 conserved protein of unknown function compare
PP_4218 -1.5 -3.3 Lipase/esterase family protein compare
PP_5430 -1.5 -1.7 protein of unknown function compare
PP_3239 -1.5 -1.1 putative cointegrate resolution protein T Tn4652 compare
PP_3094 -1.5 -1.6 conserved exported protein of unknown function compare
PP_4266 -1.5 -2.1 Adenine phosphoribosyltransferase compare
PP_2720 -1.5 -1.1 conserved protein of unknown function compare
PP_0668 -1.5 -2.3 putative Transmembrane sensor compare
PP_2253 -1.5 -2.0 Transcriptional regulator, GntR family compare
PP_1304 -1.5 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2503 -1.5 -1.5 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0958 -1.5 -2.7 phospholipid ABC transporter ATP-binding subunit compare
PP_0775 -1.5 -0.8 conserved protein of unknown function compare
PP_1742 -1.4 -1.1 conserved inner membrane protein of unknown function compare
PP_4121 -1.4 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_4793 -1.4 -1.1 conserved protein of unknown function compare
PP_2375 -1.4 -5.0 cobalamin-dependent methionine synthase compare
PP_2820 -1.4 -2.0 HTH-type transcriptional regulator nfxB compare
PP_4937 -1.4 -2.0 toluene tolerance protein compare
PP_0273 -1.4 -1.9 conserved protein of unknown function compare
PP_1099 -1.4 -1.1 Cold shock protein CapB compare
PP_4480 -1.4 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_5248 -1.4 -1.2 putative hydrolase compare
PP_4944 -1.4 -2.4 Carbamoyltransferase compare
PP_2759 -1.4 -1.5 ribose ABC transporter - ATP-binding subunit compare
PP_3496 -1.3 -2.9 Endoribonuclease L-PSP compare
PP_5706 -1.3 -1.3 Sec translocation complex - SecG subunit compare
PP_5028 -1.3 -2.4 proline iminopeptidase compare
PP_1683 -1.3 -1.9 Transcriptional regulator, MarR family compare
PP_2390 -1.3 -3.3 Transcriptional regulator, LysR family compare
PP_2864 -1.3 -2.7 conserved protein of unknown function compare
PP_0547 -1.3 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0673 -1.3 -0.8 conserved protein of unknown function compare
PP_0725 -1.3 -2.6 conserved hypothetical TPR repeat protein compare
PP_3035 -1.3 -1.4 conserved protein of unknown function compare
PP_2302 -1.3 -2.4 DNA-binding, ATP-dependent protease compare
PP_1097 -1.3 -0.9 Methionine--tRNA ligase compare
PP_0649 -1.3 -2.2 MutT/nudix family protein compare
PP_4660 -1.3 -1.9 Transcriptional regulator, LysR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms