Experiment set18IT069 for Pseudomonas putida KT2440

Compare to:

Urea nitrogen source; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_1428 +2.0 2.4 Sigma factor AlgU negative regulatory protein compare
PP_3726 +2.0 2.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_0719 +1.6 1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1215 +1.5 1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5338 +1.5 2.6 aspartate ammonia-lyase compare
PP_0801 +1.5 1.9 conserved exported protein of unknown function compare
PP_3903 +1.4 3.5 conserved protein of unknown function compare
PP_1317 +1.4 3.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4482 +1.4 2.2 Transcriptional regulator, AraC family compare
PP_5198 +1.3 2.7 conserved protein of unknown function compare
PP_4136 +1.2 1.0 Transcriptional regulator, LuxR family compare
PP_4133 +1.2 2.5 Transcriptional regulator-related protein compare
PP_3773 +1.2 1.7 conserved protein of unknown function compare
PP_0319 +1.2 2.1 conserved protein of unknown function compare
PP_3924 +1.2 2.9 conserved protein of unknown function compare
PP_1808 +1.1 3.4 glucose-6-phosphate isomerase compare
PP_4642 +1.1 1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_2716 +1.1 2.5 arsenate reductase compare
PP_2581 +1.1 0.9 conserved protein of unknown function compare
PP_4738 +1.1 1.9 conserved exported protein of unknown function compare
PP_4253 +1.1 1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_5500 +1.0 1.3 protein of unknown function compare
PP_4835 +1.0 1.9 conserved exported protein of unknown function compare
PP_1020 +1.0 1.9 putative glucose-6-phosphate 1-epimerase compare
PP_5712 +1.0 2.4 conserved protein of unknown function compare
PP_2907 +1.0 2.2 DNA-binding response regulator compare
PP_0848 +1.0 2.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2341 +1.0 1.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2497 +1.0 1.8 conserved protein of unknown function compare
PP_2794 +1.0 1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3110 +0.9 1.8 protein of unknown function compare
PP_4424 +0.9 2.0 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1562 +0.9 1.9 putative Phage terminase, small subunit compare
PP_0628 +0.9 2.6 conserved protein of unknown function compare
PP_0306 +0.9 2.1 conserved protein of unknown function compare
PP_5453 +0.9 1.2 conserved protein of unknown function compare
PP_1242 +0.9 2.7 conserved protein of unknown function compare
PP_5337 +0.9 2.8 LysR family transcriptional regulator compare
PP_2615 +0.9 1.0 hemolysin-coregulated protein compare
PP_1575 +0.9 1.6 conserved protein of unknown function compare
PP_0333 +0.9 2.6 conserved exported protein of unknown function compare
PP_3519 +0.9 0.9 putative Lipoprotein compare
PP_1164 +0.9 1.3 Transcriptional regulator, LysR family compare
PP_5201 +0.9 1.8 conserved protein of unknown function, UPF0149 family compare
PP_5313 +0.9 1.2 DNA-binding protein HU-alpha compare
PP_3401 +0.9 1.6 conserved protein of unknown function compare
PP_5648 +0.9 3.0 conserved exported protein of unknown function compare
PP_0166 +0.9 6.2 HlyD family secretion protein compare
PP_5191 +0.9 2.1 conserved exported protein of unknown function compare
PP_2749 +0.9 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3559 +0.9 2.4 glycine betaine ABC transporter (permease) compare
PP_t29 +0.9 0.6 tRNA-Ala compare
PP_5580 +0.9 1.4 protein of unknown function compare
PP_1113 +0.9 4.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2342 +0.9 2.2 conserved protein of unknown function compare
PP_0240 +0.9 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0168 +0.9 7.0 putative surface adhesion protein compare
PP_2568 +0.9 1.0 Ring-cleaving dioxygenase compare
PP_1535 +0.8 2.1 putative Methyltransferase compare
PP_5324 +0.8 2.4 Response regulator compare
PP_3484 +0.8 2.9 Response regulator receiver protein compare
PP_4256 +0.8 2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_0274 +0.8 0.9 putative transcriptional regulator containing HTH domain compare
PP_3144 +0.8 3.0 L-serine dehydratase compare
PP_0167 +0.8 6.5 Toxin secretion ATP-binding protein compare
PP_3587 +0.8 2.5 lipid hydroperoxide peroxidase compare
PP_2695 +0.8 1.5 Transcriptional regulator, LysR family compare
PP_4317 +0.8 1.9 conserved protein of unknown function compare
PP_3989 +0.8 2.4 DNA-cytosine methyltransferase compare
PP_1906 +0.8 1.9 ribosomal large subunit pseudouridine synthase C compare
PP_0770 +0.8 1.5 PemI-like protein compare
PP_1559 +0.8 1.6 Holin compare
PP_4519 +0.8 5.2 Agglutination protein compare
PP_1729 +0.8 1.4 conserved protein of unknown function compare
PP_5274 +0.8 0.9 conserved protein of unknown function compare
PP_1042 +0.8 1.2 Type II secretion system protein K compare
PP_3693 +0.8 2.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0855 +0.8 1.1 conserved protein of unknown function compare
PP_0805 +0.8 3.6 Outer membrane efflux protein compare
PP_1062 +0.8 0.9 MutT/nudix family protein compare
PP_1224 +0.8 2.8 periplasmic subunit of the TolQRA transport system compare
PP_0001 +0.8 1.1 probable chromosome-partitioning protein compare
PP_5428 +0.8 1.7 conserved exported protein of unknown function compare
PP_4625 +0.8 1.2 anti-holin regulator of holin CidA compare
PP_5249 +0.8 2.2 Transcriptional regulator, LysR family compare
PP_1963 +0.8 2.2 conserved protein of unknown function compare
PP_2340 +0.8 1.7 conserved protein of unknown function compare
PP_0840 +0.8 2.0 serine acetyltransferase compare
PP_1605 +0.8 1.4 Ribonuclease HII compare
PP_0834 +0.8 1.5 Sec translocation complex subunit YajC compare
PP_2319 +0.8 2.4 conserved protein of unknown function compare
PP_2646 +0.7 2.4 conserved protein of unknown function compare
PP_2311 +0.7 2.5 Mg-dependent cytoplasmic DNase / RNase compare
PP_2899 +0.7 0.7 conserved exported protein of unknown function compare
PP_1026 +0.7 1.8 Peptidase, M23/M37 family compare
PP_2737 +0.7 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2318 +0.7 2.2 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_5682 +0.7 2.6 conserved protein of unknown function compare
PP_5381 +0.7 1.5 hypothetical protein compare
PP_5600 +0.7 1.8 conserved protein of unknown function compare
PP_0086 +0.7 1.2 conserved protein of unknown function compare
PP_0978 +0.7 0.7 conserved protein of unknown function compare
PP_0574 +0.7 4.1 DNA-binding response regulator, LuxR family compare
PP_2229 +0.7 1.5 putative K(+)/H(+) antiporter subunit C compare
PP_0165 +0.7 5.2 GGDEF domain protein compare
PP_4273 +0.7 1.1 Transcriptional regulator, MerR family compare
PP_1731 +0.7 1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2107 +0.7 1.1 conserved protein of unknown function compare
PP_1102 +0.7 2.3 conserved protein of unknown function compare
PP_2306 +0.7 1.3 conserved exported protein of unknown function compare
PP_3013 +0.7 2.1 conserved protein of unknown function compare
PP_0806 +0.7 6.0 putative Surface adhesion protein compare
PP_2347 +0.7 1.7 DNA-binding response regulator compare
PP_4058 +0.7 3.8 1,4-alpha-glucan branching enzyme compare
PP_1508 +0.7 1.2 conserved protein of unknown function compare
PP_5100 +0.7 1.4 dITP/XTP pyrophosphatase compare
PP_3679 +0.7 1.6 conserved protein of unknown function compare
PP_1635 +0.7 0.8 DNA-binding response regulator compare
PP_3541 +0.7 1.7 Transporter, MgtC family compare
PP_3487 +0.7 1.4 conserved exported protein of unknown function compare
PP_4871 +0.7 1.6 putative lysine decarboxylase family protein compare
PP_4247 +0.7 0.6 Exonuclease compare
PP_4328 +0.7 1.6 conserved protein of unknown function compare
PP_3558 +0.7 3.0 putative Amino acid transporter, periplasmic amino acid-binding protein compare
PP_1451 +0.7 1.3 conserved exported protein of unknown function compare
PP_3201 +0.7 1.6 BNR domain protein compare
PP_0633 +0.7 1.3 Type 4 fimbrial assembly protein PilC compare
PP_2715 +0.7 1.5 ArsH protein compare
PP_0504 +0.7 1.7 Outer membrane protein OprG compare
PP_2083 +0.7 2.3 putative Lipase compare
PP_1244 +0.7 2.5 conserved protein of unknown function compare
PP_5689 +0.7 1.4 conserved protein of unknown function compare
PP_0593 +0.7 0.6 putative ribosome-binding factor compare
PP_2122 +0.6 0.8 molybdenum cofactor biosynthesis protein B compare
PP_1692 +0.6 0.8 conserved protein of unknown function compare
PP_2203 +0.6 1.1 conserved protein of unknown function compare
PP_1623 +0.6 2.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_3117 +0.6 0.9 putative protein involved in error-prone processing of DNA lesions compare
PP_0630 +0.6 0.7 DNA gyrase inhibitor YacG compare
PP_4373 +0.6 3.9 Transcriptional regulator FleQ compare
PP_2883 +0.6 1.0 conserved protein of unknown function compare
PP_4538 +0.6 2.3 FMN-dependent NADH-azoreductase 2 compare
PP_4961 +0.6 1.0 putative Lipoprotein compare
PP_4238 +0.6 1.0 conserved protein of unknown function compare
PP_4856 +0.6 2.2 Ferritin, Dps family protein compare
PP_2207 +0.6 2.3 conserved membrane protein of unknown function compare
PP_4720 +0.6 0.8 putative RNA binding protein compare
PP_0643 +0.6 1.4 protein of unknown function compare
PP_5017 +0.6 0.6 Sec-independent protein translocase protein TatB compare
PP_3204 +0.6 2.3 conserved protein of unknown function compare
PP_1571 +0.6 1.0 conserved protein of unknown function compare
PP_1214 +0.6 1.1 putative transcriptional regulatory protein compare
PP_2723 +0.6 1.8 Uncharacterized oxidoreductase YhdF compare
PP_2908 +0.6 1.6 DNA-binding transcriptional repressor compare
PP_4531 +0.6 0.8 conserved exported protein of unknown function compare
PP_4820 +0.6 1.4 tRNA-dihydrouridine synthase B compare
PP_4409 +0.6 2.1 Site-specific recombinase, phage integrase family compare
PP_0088 +0.6 2.5 putative alkanal monooxygenase compare
PP_0502 +0.6 1.4 conserved protein of unknown function compare
PP_2462 +0.6 1.3 conserved protein of unknown function compare
PP_0804 +0.6 2.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5472 +0.6 1.9 conserved exported protein of unknown function compare
PP_1351 +0.6 2.4 putative 2-dehydropantoate 2-reductase compare
PP_4886 +0.6 2.6 conserved protein of unknown function compare
PP_0211 +0.6 1.7 conserved protein of unknown function compare
PP_2118 +0.6 1.6 conserved protein of unknown function compare
PP_1176 +0.6 0.7 conserved protein of unknown function compare
PP_4917 +0.6 1.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2330 +0.6 1.2 conserved protein of unknown function compare
PP_0945 +0.6 0.9 conserved protein of unknown function compare
PP_1070 +0.6 1.9 glutamate / aspartate ABC transporter - permease subunit compare
PP_4942 +0.6 0.8 conserved protein of unknown function compare
PP_5702 +0.6 1.4 conserved protein of unknown function compare
PP_1482 +0.6 1.4 polyamine ABC transporter, permease protein compare
PP_1112 +0.6 2.5 conserved membrane protein of unknown function compare
PP_1999 +0.6 0.5 membrane protein required for colicin V production compare
PP_0685 +0.6 0.9 conserved protein of unknown function compare
PP_3749 +0.6 1.8 conserved protein of unknown function compare
PP_4306 +0.6 1.9 conserved protein of unknown function compare
PP_4500 +0.6 1.5 TrpH family protein compare
PP_4447 +0.6 1.5 conserved protein of unknown function compare
PP_5514 +0.6 1.8 conserved protein of unknown function compare
PP_1007 +0.6 2.9 putative Transmembrane sensor compare
PP_3531 +0.6 1.7 conserved exported protein of unknown function compare
PP_5486 +0.6 0.8 conserved protein of unknown function compare
PP_2545 +0.6 2.9 trans-aconitate methyltransferase compare
PP_0679 +0.6 1.6 conserved exported protein of unknown function compare
PP_1106 +0.6 2.2 conserved protein of unknown function compare
PP_0850 +0.6 1.5 Dual-specificity RNA methyltransferase RlmN compare
PP_0657 +0.6 1.8 putative Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_5179 +0.6 1.8 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_5502 +0.6 1.1 ribosome modulation factor compare
PP_2094 +0.6 1.9 putative Nitrate-binding protein NasS conserved
PP_4261 +0.6 1.4 cation-transporting P-type ATPase compare
PP_0750 +0.6 1.0 conserved protein of unknown function compare
PP_5162 +0.6 1.1 conserved exported protein of unknown function compare
PP_3621 +0.6 1.4 vanillin dehydrogenase, iorA-like component (from data) compare
PP_0959 +0.6 0.8 phospholipid ABC transporter compare
PP_3439 +0.6 2.3 Transcriptional regulator, AraC family compare
PP_3328 +0.6 1.1 putative Ring-cleaving dioxygenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms