Experiment set18IT065 for Pseudomonas putida KT2440

Compare to:

N-Acetyl-D-Glucosamine nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_3110 -6.5 -2.3 protein of unknown function compare
PP_0293 -6.4 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0153 -6.2 -2.2 hypothetical protein compare
PP_2765 -6.1 -2.1 putative Sulfonate monooxygenase MsuD compare
PP_2388 -6.1 -3.0 Transporter, LysE family compare
PP_0513 -6.0 -2.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2309 -5.7 -1.2 conserved protein of unknown function compare
PP_1208 -5.7 -2.0 conserved protein of unknown function, SlyX family compare
PP_2370 -5.6 -2.8 conserved protein of unknown function compare
PP_0126 -5.5 -3.2 Cytochrome c4 compare
PP_5015 -5.4 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5225 -5.4 -1.1 frataxin compare
PP_0566 -5.2 -1.1 translation-related factor compare
PP_3098 -5.1 -1.0 conserved protein of unknown function compare
PP_1269 -5.1 -1.0 Universal stress protein family compare
PP_0290 -5.0 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5047 -5.0 -5.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4793 -5.0 -1.4 conserved protein of unknown function compare
PP_t12 -4.8 -1.0 tRNA-Thr compare
PP_5486 -4.8 -1.4 conserved protein of unknown function compare
PP_3245 -4.8 -1.4 conserved protein of unknown function compare
PP_1293 -4.6 -1.3 molybdopterin synthase small subunit compare
PP_0593 -4.6 -0.9 putative ribosome-binding factor compare
PP_5348 -4.6 -7.2 Transcriptional regulator, LysR family compare
PP_1439 -4.5 -1.3 conserved exported protein of unknown function compare
PP_0957 -4.5 -1.3 D-arabinose 5-phosphate isomerase compare
PP_5471 -4.4 -1.3 putative response regulator receiver protein compare
PP_1362 -4.4 -3.0 pyruvate kinase II compare
PP_4005 -4.4 -3.3 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_1589 -4.3 -9.7 uridylyltransferase compare
PP_5155 -4.3 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2737 -4.2 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0966 -4.2 -8.1 Histidinol dehydrogenase compare
PP_3902 -4.1 -3.0 conserved protein of unknown function compare
PP_4952 -4.1 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1344 -4.0 -1.6 conserved protein of unknown function compare
PP_2001 -4.0 -6.3 O-succinylhomoserine sulfhydrylase compare
PP_0289 -4.0 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.0 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1654 -4.0 -2.7 cysteine synthase B compare
PP_0888 -3.9 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2402 -3.9 -2.1 putative Sensor histidine kinase compare
PP_3999 -3.8 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0846 -3.8 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4122 -3.8 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1366 -3.8 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1995 -3.8 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5475 -3.7 -1.1 conserved protein of unknown function compare
PP_0422 -3.7 -3.1 Indole-3-glycerol phosphate synthase compare
PP_2903 -3.6 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2168 -3.6 -6.8 Transaldolase compare
PP_0082 -3.6 -4.7 tryptophan synthase alpha chain compare
PP_5303 -3.6 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2299 -3.4 -3.0 Trigger factor compare
PP_1734 -3.4 -5.6 Probable septum site-determining protein MinC compare
PP_4680 -3.4 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2087 -3.4 -3.6 CmpX protein compare
PP_2327 -3.3 -5.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -3.3 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_2371 -3.3 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2378 -3.2 -2.8 Fe/S biogenesis protein NfuA compare
PP_0083 -3.2 -4.6 tryptophan synthase beta chain compare
PP_4129 -3.2 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1088 -3.1 -6.9 Argininosuccinate synthase compare
PP_4696 -3.1 -5.2 Nitrogen regulation protein NR(I) compare
PP_3407 -3.1 -2.2 conserved protein of unknown function compare
PP_1237 -3.0 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1097 -3.0 -0.8 Methionine--tRNA ligase compare
PP_1691 -3.0 -3.1 conserved protein of unknown function compare
PP_4804 -3.0 -3.7 RlpA-like lipoprotein compare
PP_1898 -3.0 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4847 -2.9 -1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_2093 -2.9 -4.8 NasT conserved
PP_1836 -2.9 -2.0 putative metal transporter, ZIP family compare
PP_5328 -2.9 -1.7 putative phosphate transport system permease protein compare
PP_0406 -2.8 -2.6 Nucleotidyltransferase family protein compare
PP_5128 -2.8 -4.2 Dihydroxy-acid dehydratase compare
PP_4874 -2.8 -1.1 50S ribosomal protein L9 compare
PP_0965 -2.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3484 -2.8 -3.4 Response regulator receiver protein compare
PP_4930 -2.8 -2.6 putative small multidrug resistance protein compare
PP_1303 -2.8 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_4379 -2.7 -4.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1985 -2.7 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_4338 -2.7 -3.6 Chemotaxis histidine kinase CheA compare
PP_5267 -2.7 -2.0 putative cytochrome c5 compare
PP_1986 -2.7 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_4678 -2.7 -6.7 Ketol-acid reductoisomerase compare
PP_3318 -2.7 -1.6 conserved protein of unknown function compare
PP_5327 -2.7 -4.2 putative phosphate ABC transporter, permease subunit compare
PP_0855 -2.6 -1.3 conserved protein of unknown function compare
PP_0417 -2.6 -7.9 Anthranilate synthase component 1 compare
PP_3411 -2.6 -1.4 conserved protein of unknown function compare
PP_0184 -2.6 -3.7 Argininosuccinate lyase compare
PP_5098 -2.6 -3.4 methionine biosynthesis protein MetW compare
PP_5097 -2.5 -5.0 homoserine O-acetyltransferase compare
PP_1231 -2.5 -2.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0421 -2.4 -4.4 Anthranilate phosphoribosyltransferase compare
PP_3916 -2.4 -1.5 conserved protein of unknown function compare
PP_5221 -2.4 -1.5 conserved protein of unknown function, UPF0178 family compare
PP_3511 -2.4 -3.5 Branched-chain-amino-acid aminotransferase compare
PP_2336 -2.4 -3.9 aconitate hydratase 1 compare
PP_1025 -2.4 -5.4 2-isopropylmalate synthase compare
PP_1261 -2.4 -2.1 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2568 -2.4 -1.0 Ring-cleaving dioxygenase compare
PP_4829 -2.3 -2.5 putative precorrin-3B synthase compare
PP_3398 -2.3 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0989 -2.3 -1.7 glycine cleavage system H protein 1 compare
PP_4215 -2.3 -4.0 pyoverdine biosynthesis related protein compare
PP_0673 -2.3 -1.5 conserved protein of unknown function compare
PP_3043 -2.3 -1.3 conserved protein of unknown function compare
PP_4340 -2.3 -2.2 response regulator for chemotactic signal transduction compare
PP_2474 -2.3 -2.3 Glutathione S-transferase family protein compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_2092 -2.3 -4.2 Nitrate transporter conserved
PP_1548 -2.3 -1.4 conserved protein of unknown function compare
PP_2243 -2.2 -2.3 conserved protein of unknown function compare
PP_0967 -2.2 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1672 -2.2 -3.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3884 -2.2 -2.9 Phage holin, lambda family compare
PP_1292 -2.2 -3.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5583 -2.2 -1.2 conserved protein of unknown function compare
PP_1988 -2.2 -3.6 3-isopropylmalate dehydrogenase compare
PP_5589 -2.2 -2.4 protein of unknown function containing Rhs repeat-associated core domain compare
PP_5095 -2.2 -0.9 pyrroline-5-carboxylate reductase compare
PP_4886 -2.1 -3.5 conserved protein of unknown function compare
PP_5350 -2.1 -2.5 Transcriptional regulator, RpiR family compare
PP_3369 -2.1 -2.7 Transcriptional regulator, LysR family compare
PP_5347 -2.1 -4.6 pyruvate carboxylase subunit A compare
PP_5048 -2.1 -2.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2145 -2.1 -2.0 beta-N-acetylglucosaminidase compare
PP_4532 -2.1 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5075 -2.1 -4.9 glutamate synthase (NADPH) beta subunit compare
PP_4778 -2.1 -1.5 23S rRNA pseudouridine 2457 synthase compare
PP_1079 -2.1 -2.5 Ornithine carbamoyltransferase compare
PP_0307 -2.0 -1.3 conserved exported protein of unknown function compare
PP_3258 -2.0 -1.2 conserved protein of unknown function compare
PP_1004 -2.0 -1.3 conserved protein of unknown function compare
PP_4120 -2.0 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_4890 -2.0 -1.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5202 -2.0 -1.8 putative cell division protein compare
PP_1353 -2.0 -2.1 conserved membrane protein of unknown function compare
PP_0291 -2.0 -1.3 conserved protein of unknown function compare
PP_4824 -2.0 -4.8 Sensor histidine kinase/response regulator compare
PP_5143 -1.9 -1.4 conserved membrane protein of unknown function compare
PP_2430 -1.9 -2.0 Transcriptional regulator, AraC family compare
PP_1677 -1.9 -2.6 Adenosyl-cobyric acid synthase compare
PP_1026 -1.9 -2.1 Peptidase, M23/M37 family compare
PP_4977 -1.9 -4.2 5,10-methylenetetrahydrofolate reductase compare
PP_0117 -1.9 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_0434 -1.9 -2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_5027 -1.9 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4785 -1.9 -5.4 conserved exported protein of unknown function compare
PP_5519 -1.8 -1.6 conserved protein of unknown function of phage origin compare
PP_5621 -1.8 -1.3 protein of unknown function compare
PP_2816 -1.8 -2.5 putative Transcriptional regulator NfxB compare
PP_0420 -1.8 -3.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4130 -1.8 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5500 -1.8 -1.7 protein of unknown function compare
PP_2142 -1.8 -1.6 Cell division inhibitor SulA compare
PP_3637 -1.8 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4503 -1.8 -1.2 DNA-binding response regulator compare
PP_2820 -1.8 -1.8 HTH-type transcriptional regulator nfxB compare
PP_2868 -1.8 -2.6 Transcriptional regulator, Cro/CI family compare
PP_2094 -1.8 -2.7 putative Nitrate-binding protein NasS conserved
PP_4721 -1.8 -2.2 conserved membrane protein of unknown function compare
PP_4895 -1.8 -1.2 tRNA dimethylallyltransferase compare
PP_4460 -1.8 -2.5 Transcriptional regulator, LysR family compare
PP_0725 -1.8 -3.2 conserved hypothetical TPR repeat protein compare
PP_0962 -1.7 -1.5 toluene-tolerance protein compare
PP_4707 -1.7 -1.5 OsmY-related protein compare
PP_4666 -1.7 -2.1 3-hydroxyisobutyrate dehydrogenase compare
PP_1022 -1.7 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_0292 -1.7 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1912 -1.7 -2.8 Phosphate acyltransferase compare
PP_1637 -1.7 -3.1 Transcriptional regulator, LysR family compare
PP_0362 -1.7 -4.2 Biotin synthase compare
PP_2302 -1.7 -3.4 DNA-binding, ATP-dependent protease compare
PP_4909 -1.7 -3.8 phosphoserine phosphatase compare
PP_4988 -1.7 -6.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1705 -1.6 -3.6 nitrite reductase [NAD(P)H] large subunit conserved
PP_3541 -1.6 -1.3 Transporter, MgtC family compare
PP_2169 -1.6 -2.2 tRNA-dihydrouridine synthase A compare
PP_3277 -1.6 -3.2 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_5156 -1.6 -1.1 conserved exported protein of unknown function compare
PP_2229 -1.6 -1.9 putative K(+)/H(+) antiporter subunit C compare
PP_3522 -1.6 -1.9 conserved protein of unknown function compare
PP_0313 -1.6 -1.6 putative electron transfer flavoprotein beta subunit compare
PP_3919 -1.6 -1.2 conserved protein of unknown function compare
PP_2414 -1.6 -1.0 conserved exported protein of unknown function compare
PP_1020 -1.6 -0.9 putative glucose-6-phosphate 1-epimerase compare
PP_2959 -1.6 -2.4 Alkylhydroperoxidase AhpD domain protein compare
PP_4313 -1.6 -1.7 putative peptidylprolyl isomerase compare
PP_4267 -1.6 -2.0 Recombination protein RecR compare
PP_2032 -1.6 -2.5 putative ATPase compare
PP_4693 -1.5 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_4214 -1.5 -2.2 pyoverdine biosynthesis related protein compare
PP_5548 -1.5 -1.0 protein of unknown function compare
PP_2137 -1.5 -1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1826 -1.5 -1.6 Hydrolase, isochorismatase family compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms