Experiment set18IT060 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_4364 -6.5 -4.5 putative Anti-sigma F factor antagonist compare
PP_1985 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.5 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -5.9 -4.0 tryptophan synthase alpha chain compare
PP_0184 -5.8 -4.0 Argininosuccinate lyase compare
PP_1079 -5.2 -7.2 Ornithine carbamoyltransferase compare
PP_5098 -5.2 -9.9 methionine biosynthesis protein MetW compare
PP_0083 -5.1 -7.0 tryptophan synthase beta chain compare
PP_3511 -5.1 -8.8 Branched-chain-amino-acid aminotransferase compare
PP_5303 -5.1 -6.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4680 -5.0 -15.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -4.9 -12.3 pyruvate carboxylase subunit A compare
PP_2327 -4.5 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5097 -4.4 -11.8 homoserine O-acetyltransferase compare
PP_0422 -4.3 -3.7 Indole-3-glycerol phosphate synthase compare
PP_4678 -4.1 -12.5 Ketol-acid reductoisomerase compare
PP_5346 -4.0 -8.5 pyruvate carboxylase subunit B compare
PP_4696 -4.0 -6.7 Nitrogen regulation protein NR(I) compare
PP_4122 -3.9 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4785 -3.8 -6.1 conserved exported protein of unknown function compare
PP_3999 -3.8 -7.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5185 -3.7 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -3.7 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -3.7 -8.0 Transaldolase compare
PP_5348 -3.6 -7.2 Transcriptional regulator, LysR family compare
PP_0290 -3.6 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -3.4 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4994 -3.4 -4.6 conserved protein of unknown function compare
PP_4909 -3.3 -5.9 phosphoserine phosphatase compare
PP_0787 -3.3 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0001 -3.3 -2.1 probable chromosome-partitioning protein compare
PP_0965 -3.3 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5027 -3.2 -2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0967 -3.2 -5.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4126 -3.2 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_2371 -3.1 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -3.1 -5.9 O-succinylhomoserine sulfhydrylase compare
PP_4890 -3.1 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -3.1 -11.2 Anthranilate synthase component 1 compare
PP_4874 -3.0 -1.7 50S ribosomal protein L9 compare
PP_2341 -3.0 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5128 -3.0 -6.2 Dihydroxy-acid dehydratase compare
PP_2328 -2.9 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_1022 -2.9 -6.1 glucose 6-phosphate-1-dehydrogenase compare
PP_1995 -2.9 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4726 -2.9 -3.4 Chaperone protein DnaJ compare
PP_0420 -2.8 -6.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4532 -2.8 -2.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5155 -2.6 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1428 -2.6 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_1733 -2.6 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_3241 -2.6 -1.6 conserved exported protein of unknown function compare
PP_5017 -2.6 -1.3 Sec-independent protein translocase protein TatB compare
PP_1912 -2.6 -4.9 Phosphate acyltransferase compare
PP_1986 -2.5 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_0966 -2.5 -6.0 Histidinol dehydrogenase compare
PP_2681 -2.5 -1.5 coenzyme PQQ synthesis protein D compare
PP_5008 -2.5 -1.6 Poly granule-associated protein compare
PP_1988 -2.5 -4.2 3-isopropylmalate dehydrogenase compare
PP_1025 -2.5 -6.7 2-isopropylmalate synthase compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_3417 -2.4 -2.9 D-gluconate transporter compare
PP_0421 -2.4 -4.5 Anthranilate phosphoribosyltransferase compare
PP_0362 -2.4 -6.3 Biotin synthase compare
PP_1994 -2.4 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_5095 -2.4 -1.3 pyrroline-5-carboxylate reductase compare
PP_t29 -2.3 -2.2 tRNA-Ala compare
PP_5054 -2.3 -2.0 glutaredoxin 3 compare
PP_0801 -2.3 -1.3 conserved exported protein of unknown function compare
PP_5217 -2.3 -7.6 Polyphosphate kinase compare
PP_1088 -2.2 -6.6 Argininosuccinate synthase compare
PP_3484 -2.2 -3.4 Response regulator receiver protein compare
PP_1654 -2.2 -3.0 cysteine synthase B compare
PP_5014 -2.2 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4984 -2.1 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1233 -2.1 -2.2 sulfurtransferase compare
PP_2388 -2.1 -1.8 Transporter, LysE family compare
PP_1231 -2.1 -3.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3730 -2.1 -1.5 Transcriptional regulatory protein AruR compare
PP_4977 -2.0 -5.6 5,10-methylenetetrahydrofolate reductase compare
PP_5114 -2.0 -2.0 putative adenine methyltransferase compare
PP_1468 -2.0 -2.0 Tyrosine recombinase XerD compare
PP_0846 -2.0 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_0406 -2.0 -2.5 Nucleotidyltransferase family protein compare
PP_0958 -1.9 -4.3 phospholipid ABC transporter ATP-binding subunit compare
PP_t12 -1.9 -1.1 tRNA-Thr compare
PP_1664 -1.9 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1362 -1.9 -3.0 pyruvate kinase II compare
PP_1672 -1.9 -4.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0848 -1.8 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0547 -1.8 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2820 -1.8 -2.9 HTH-type transcriptional regulator nfxB compare
PP_2378 -1.8 -2.6 Fe/S biogenesis protein NfuA compare
PP_5350 -1.8 -2.6 Transcriptional regulator, RpiR family compare
PP_0363 -1.8 -5.7 8-amino-7-oxononanoate synthase compare
PP_4964 -1.7 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0365 -1.7 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1898 -1.7 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1344 -1.7 -1.7 conserved protein of unknown function compare
PP_4693 -1.7 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_1987 -1.7 -2.1 Methlytransferase, UbiE/COQ5 family compare
PP_0393 -1.7 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1734 -1.6 -3.3 Probable septum site-determining protein MinC compare
PP_2171 -1.6 -4.3 Transporter, LysE family compare
PP_3508 -1.6 -3.1 Protein CobW compare
PP_5652 -1.6 -1.0 conserved protein of unknown function, phage origin compare
PP_1001 -1.5 -2.5 arginine deiminase compare
PP_4480 -1.5 -4.7 arginine N-succinyltransferase, subunit alpha compare
PP_3392 -1.5 -1.5 conserved protein of unknown function compare
PP_5015 -1.5 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0630 -1.5 -1.0 DNA gyrase inhibitor YacG compare
PP_1096 -1.5 -0.9 putative electron transport complex protein compare
PP_2375 -1.5 -6.3 cobalamin-dependent methionine synthase compare
PP_1678 -1.4 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5393 -1.4 -1.2 putative metal-binding chaperone compare
PP_5230 -1.4 -1.8 Tyrosine recombinase XerC compare
PP_4961 -1.4 -1.2 putative Lipoprotein compare
PP_1764 -1.4 -2.2 Phosphoglycolate phosphatase 2 compare
PP_2087 -1.4 -2.8 CmpX protein compare
PP_2163 -1.4 -3.4 VacJ lipoprotein compare
PP_4130 -1.4 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4045 -1.4 -2.4 conserved protein of unknown function compare
PP_4826 -1.4 -3.0 Precorrin-3B C17-methyltransferase compare
PP_0364 -1.3 -3.6 pimeloyl-[acp] methyl ester esterase compare
PP_3307 -1.3 -1.5 conserved protein of unknown function compare
PP_4597 -1.3 -2.9 Cyclic pyranopterin monophosphate synthase compare
PP_4832 -1.3 -2.4 Precorrin-6x reductase compare
PP_5359 -1.3 -2.5 CobW/P47K family protein compare
PP_1048 -1.3 -1.5 putative protein secretion protein for export compare
PP_0366 -1.3 -3.0 dethiobiotin synthetase compare
PP_4504 -1.3 -1.0 conserved exported protein of unknown function compare
PP_4895 -1.2 -2.1 tRNA dimethylallyltransferase compare
PP_2044 -1.2 -1.6 conserved inner membrane protein of unknown function compare
PP_4223 -1.2 -1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0405 -1.2 -4.0 conserved protein of unknown function compare
PP_0164 -1.2 -2.5 conserved protein of unknown function compare
PP_0291 -1.2 -1.1 conserved protein of unknown function compare
PP_4804 -1.2 -1.8 RlpA-like lipoprotein compare
PP_5289 -1.2 -2.3 Acetylglutamate kinase compare
PP_4131 -1.2 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_1426 -1.2 -5.2 L-aspartate oxidase compare
PP_t11 -1.2 -1.9 tRNA-Lys compare
PP_3312 -1.2 -1.3 putative Heat shock protein compare
PP_2088 -1.2 -1.0 RNA polymerase sigma factor SigX compare
PP_1528 -1.2 -1.1 conserved protein of unknown function compare
PP_2337 -1.2 -1.4 aconitate isomerase compare
PP_5104 -1.2 -3.5 thiazole synthase compare
PP_1679 -1.2 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4121 -1.2 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_3946 -1.2 -1.2 HTH-type transcriptional repressor NicR compare
PP_2622 -1.1 -1.5 conserved protein of unknown function compare
PP_1041 -1.1 -1.6 twin arginine protein export complex subunit compare
PP_0025 -1.1 -0.9 hypothetical protein compare
PP_0434 -1.1 -2.1 Anhydro-N-acetylmuramic acid kinase compare
PP_1553 -1.1 -0.8 conserved protein of unknown function compare
PP_4340 -1.1 -1.3 response regulator for chemotactic signal transduction compare
PP_4520 -1.1 -1.6 conserved protein of unknown function compare
PP_0035 -1.1 -1.7 putative bactoprenol-linked glycose transferase compare
PP_4066 -1.1 -1.2 methylglutaconyl-CoA hydratase compare
PP_2640 -1.1 -2.3 Acetyltransferase, GNAT family compare
PP_1218 -1.1 -1.2 putative acyl-CoA thioesterase compare
PP_0484 -1.1 -2.7 transporter of an unknown substrate compare
PP_0760 -1.1 -2.2 conserved membrane protein of unknown function compare
PP_2903 -1.1 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2878 -1.1 -1.3 conserved protein of unknown function compare
PP_5045 -1.1 -1.7 tRNA sulfurtransferase compare
PP_0495 -1.1 -2.8 type 1 L-asparaginase compare
PP_4263 -1.1 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4109 -1.1 -2.0 conserved protein of unknown function compare
PP_1319 -1.1 -2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0274 -1.1 -0.7 putative transcriptional regulator containing HTH domain compare
PP_5714 -1.1 -2.7 conserved protein of unknown function compare
PP_2370 -1.0 -1.3 conserved protein of unknown function compare
PP_4074 -1.0 -1.9 conserved protein of unknown function compare
PP_4824 -1.0 -3.3 Sensor histidine kinase/response regulator compare
PP_4879 -1.0 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4015 -1.0 -2.3 HflD-like high frequency lysogenization protein compare
PP_2307 -1.0 -2.1 conserved protein of unknown function compare
PP_4124 -1.0 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_0153 -1.0 -1.2 hypothetical protein compare
PP_5639 -1.0 -3.4 conserved exported protein of unknown function compare
PP_5007 -1.0 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1206 -1.0 -3.0 basic-amino-acid specific porin OprD compare
PP_1655 -1.0 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0127 -1.0 -1.9 Thiol:disulfide interchange protein compare
PP_4479 -1.0 -1.9 arginine N-succinyltransferase, subunit beta compare
PP_0921 -1.0 -2.2 Transcriptional regulator, ArsR family compare
PP_5203 -1.0 -2.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_1783 -1.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1676 -1.0 -3.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4101 -1.0 -2.0 Acetyltransferase, GNAT family compare
PP_1621 -1.0 -2.1 Protein-L-isoaspartate O-methyltransferase compare
PP_4830 -1.0 -2.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_3662 -1.0 -2.7 conserved protein of unknown function compare
PP_1656 -1.0 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_2402 -1.0 -1.3 putative Sensor histidine kinase compare
PP_2661 -1.0 -2.2 conserved protein of unknown function compare
PP_3333 -1.0 -1.8 conserved protein of unknown function compare
PP_2848 -1.0 -1.4 urease accessory protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms