Experiment set18IT057 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_02225 -4.6 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24705 -4.4 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_22570 -4.0 -1.0 H-NS histone compare
PS417_27300 -3.9 -1.0 cell division protein ZapA compare
PS417_26850 -3.9 -1.0 twin-arginine translocation pathway signal protein compare
PS417_16555 -3.5 -1.8 cupin compare
PS417_24500 -3.4 -2.8 DEAD/DEAH box helicase compare
PS417_27795 -3.1 -0.8 orotate phosphoribosyltransferase compare
PS417_00385 -2.6 -0.9 Fur family transcriptional regulator compare
PS417_04290 -2.6 -3.6 hypothetical protein compare
PS417_27870 -2.6 -3.4 ATP-dependent DNA helicase RecG compare
PS417_01915 -2.3 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08410 -2.2 -1.9 hypothetical protein compare
PS417_03300 -2.2 -2.5 alanine acetyltransferase compare
PS417_18310 -2.2 -0.9 hypothetical protein compare
PS417_04585 -2.2 -0.9 hypothetical protein compare
PS417_19350 -2.2 -4.7 GTP cyclohydrolase compare
PS417_26370 -2.1 -3.3 RNA helicase compare
PS417_15705 -2.1 -2.0 nitrate reductase compare
PS417_22060 -2.1 -1.0 hypothetical protein compare
PS417_26240 -2.0 -1.8 N-methylproline demethylase compare
PS417_18055 -2.0 -0.9 general secretion pathway protein GspK compare
PS417_26990 -2.0 -0.7 RNA pyrophosphohydrolase compare
PS417_00975 -2.0 -1.2 hypothetical protein compare
PS417_24745 -2.0 -2.6 gamma-glutamyl phosphate reductase compare
PS417_27595 -1.9 -1.6 recombinase XerC compare
PS417_27005 -1.9 -0.8 membrane protein compare
PS417_26175 -1.9 -0.9 sarcosine oxidase subunit gamma compare
PS417_01590 -1.9 -1.6 polysaccharide deacetylase compare
PS417_17240 -1.8 -1.9 trigger factor compare
PS417_02880 -1.8 -0.9 copper chaperone compare
PS417_15480 -1.7 -1.8 ABC transporter substrate-binding protein compare
PS417_04090 -1.7 -3.1 hypothetical protein compare
PS417_08170 -1.7 -6.6 capsular biosynthesis protein compare
PS417_24115 -1.7 -1.4 hypothetical protein compare
PS417_23545 -1.7 -1.2 gamma-glutamyl kinase compare
PS417_03560 -1.7 -1.0 GTP-binding protein compare
PS417_11705 -1.7 -4.6 cyclic peptide transporter compare
PS417_20880 -1.6 -1.9 GntR family transcriptional regulator compare
PS417_06680 -1.6 -5.3 nuclease PIN compare
PS417_04960 -1.6 -1.1 hypothetical protein compare
PS417_13510 -1.6 -0.8 polyketide cyclase compare
PS417_22565 -1.6 -0.5 formyltetrahydrofolate deformylase compare
PS417_06370 -1.5 -1.0 cold-shock protein compare
PS417_11320 -1.5 -1.3 hypothetical protein compare
PS417_13055 -1.5 -1.6 aminotransferase compare
PS417_19955 -1.5 -1.3 hypothetical protein compare
PS417_21850 -1.5 -0.9 LysR family transcriptional regulator compare
PS417_05865 -1.5 -1.1 hypothetical protein compare
PS417_16490 -1.5 -1.0 cell division protein FtsK compare
PS417_00085 -1.5 -1.7 16S rRNA methyltransferase compare
PS417_15770 -1.5 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_27245 -1.5 -2.7 aminotransferase DegT compare
PS417_09200 -1.4 -2.4 ABC transporter compare
PS417_08670 -1.4 -2.2 molybdopterin biosynthesis protein B compare
PS417_21430 -1.4 -1.3 3-oxoacyl-ACP synthase compare
PS417_15135 -1.4 -1.1 hypothetical protein compare
PS417_02885 -1.4 -1.6 hypothetical protein compare
PS417_11430 -1.4 -4.4 EamA compare
PS417_27195 -1.4 -1.0 N-acetylglutamate synthase compare
PS417_24605 -1.4 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_21380 -1.4 -3.1 GntR family transcriptional regulator compare
PS417_13010 -1.4 -1.6 alpha/beta hydrolase compare
PS417_10145 -1.4 -1.2 hypothetical protein compare
PS417_10480 -1.4 -1.6 glutathione S-transferase compare
PS417_00180 -1.4 -1.7 tryptophan synthase subunit alpha compare
PS417_06150 -1.4 -2.0 SAM-dependent methlyltransferase compare
PS417_05200 -1.3 -2.3 DNA recombination protein RecO compare
PS417_24525 -1.3 -1.7 nuclease compare
PS417_20855 -1.3 -0.7 hypothetical protein compare
PS417_04380 -1.3 -0.6 ABC transporter permease compare
PS417_06685 -1.3 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_07170 -1.3 -1.7 hypothetical protein compare
PS417_00045 -1.3 -1.0 glycerol acyltransferase compare
PS417_26685 -1.3 -1.5 hypothetical protein compare
PS417_04875 -1.3 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_22315 -1.3 -1.8 DNA-3-methyladenine glycosylase compare
PS417_02575 -1.3 -2.4 membrane protein compare
PS417_07620 -1.3 -1.3 beta-hexosaminidase compare
PS417_09470 -1.3 -0.8 hypothetical protein compare
PS417_24395 -1.3 -3.3 hemolysin D compare
PS417_24135 -1.3 -1.3 hypothetical protein compare
PS417_19505 -1.3 -1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_07165 -1.2 -4.1 dihydrodipicolinate synthase compare
PS417_19610 -1.2 -1.3 molybdenum cofactor sulfurase compare
PS417_17070 -1.2 -1.6 RNA polymerase subunit sigma-24 compare
PS417_09545 -1.2 -1.6 aldehyde-activating protein compare
PS417_16560 -1.2 -1.5 GNAT family acetyltransferase compare
PS417_04865 -1.2 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_06865 -1.2 -1.6 transporter compare
PS417_17835 -1.2 -1.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_24765 -1.2 -2.2 membrane protein compare
PS417_05695 -1.2 -3.2 transcriptional regulator compare
PS417_15590 -1.2 -2.8 hypothetical protein compare
PS417_09210 -1.1 -0.8 TetR family transcriptional regulator compare
PS417_20025 -1.1 -0.9 alpha-ribazole phosphatase compare
PS417_08230 -1.1 -1.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_18025 -1.1 -1.7 cytochrome C compare
PS417_04500 -1.1 -0.9 hypothetical protein compare
PS417_02055 -1.1 -1.9 methyltransferase compare
PS417_02925 -1.1 -2.7 membrane protein compare
PS417_19790 -1.1 -2.1 ATP synthase compare
PS417_16855 -1.1 -1.0 cation:proton antiporter compare
PS417_11420 -1.1 -1.9 potassium transporter KefB compare
PS417_17565 -1.1 -1.7 branched-chain amino acid aminotransferase compare
PS417_27180 -1.1 -1.3 peroxidase compare
PS417_13620 -1.1 -0.7 thermostable hemolysin compare
PS417_03260 -1.1 -0.8 5S ribosomal RNA compare
PS417_18235 -1.1 -1.6 nitrile hydratase compare
PS417_27425 -1.1 -4.5 exopolyphosphatase compare
PS417_04595 -1.1 -1.1 cell division protein MraZ compare
PS417_22875 -1.1 -1.0 hypothetical protein compare
PS417_05160 -1.1 -0.6 DNA polymerase III subunit chi compare
PS417_13255 -1.1 -1.3 ABC transporter compare
PS417_10405 -1.1 -0.7 filamentous hemagglutinin compare
PS417_22795 -1.1 -0.9 exclusion suppressor FxsA compare
PS417_01875 -1.1 -1.2 polyhydroxyalkanoic acid system protein compare
PS417_15400 -1.0 -0.9 hypothetical protein compare
PS417_05815 -1.0 -2.3 recombinase RecA compare
PS417_24560 -1.0 -3.1 ferrous iron transporter compare
PS417_26585 -1.0 -2.3 malonate carrier protein compare
PS417_08295 -1.0 -1.9 ATPase compare
PS417_20090 -1.0 -5.8 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_14400 -1.0 -1.3 hypothetical protein compare
PS417_09035 -1.0 -1.8 hypothetical protein compare
PS417_04180 -1.0 -1.9 GntR family transcriptional regulator compare
PS417_05470 -1.0 -2.1 DSBA oxidoreductase compare
PS417_08045 -1.0 -1.2 uracil permease compare
PS417_05535 -1.0 -1.0 Fis family transcriptional regulator compare
PS417_21705 -1.0 -2.9 arginine N-succinyltransferase compare
PS417_16005 -1.0 -2.0 ATPase compare
PS417_15285 -1.0 -0.6 type VI secretion protein compare
PS417_04440 -1.0 -1.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_26340 -1.0 -3.2 betaine-aldehyde dehydrogenase compare
PS417_12325 -1.0 -2.1 precorrin-4 C11-methyltransferase compare
PS417_08135 -1.0 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02560 -1.0 -1.1 23S rRNA methyltransferase compare
PS417_24575 -1.0 -0.7 hypothetical protein compare
PS417_21480 -1.0 -0.8 23S rRNA pseudouridylate synthase compare
PS417_11435 -1.0 -3.9 asparagine synthase compare
PS417_17650 -1.0 -1.4 proteinase compare
PS417_10425 -1.0 -0.9 hypothetical protein compare
PS417_23170 -1.0 -1.1 FeS assembly protein IscX compare
PS417_22945 -1.0 -1.1 phosphoribosylglycinamide formyltransferase compare
PS417_11375 -1.0 -1.3 hypothetical protein compare
PS417_01360 -1.0 -1.1 4-oxalocrotonate tautomerase compare
PS417_23805 -0.9 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_21125 -0.9 -2.9 phosphoadenosine phosphosulfate reductase compare
PS417_25705 -0.9 -1.4 lipoate--protein ligase compare
PS417_11025 -0.9 -2.7 sugar ABC transporter substrate-binding protein compare
PS417_26420 -0.9 -0.7 hypothetical protein compare
PS417_11175 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_02555 -0.9 -6.2 exoribonuclease R compare
PS417_01305 -0.9 -1.9 Fis family transcriptional regulator compare
PS417_19010 -0.9 -3.8 LysR family transcriptional regulator compare
PS417_24460 -0.9 -0.8 hypothetical protein compare
PS417_08125 -0.9 -0.3 prephenate dehydratase compare
PS417_28050 -0.9 -1.5 hypothetical protein compare
PS417_04300 -0.9 -1.6 FagA protein compare
PS417_27800 -0.9 -0.6 exodeoxyribonuclease III compare
PS417_09445 -0.9 -1.7 antibiotic biosynthesis monooxygenase compare
PS417_25645 -0.9 -2.8 peptidase M23 compare
PS417_03340 -0.9 -1.0 gluconate transporter compare
PS417_04295 -0.9 -3.7 peptidase PmbA compare
PS417_16995 -0.9 -2.4 LysR family transcriptional regulator compare
PS417_12540 -0.9 -1.3 hypothetical protein compare
PS417_26730 -0.9 -0.3 pyrroline-5-carboxylate reductase compare
PS417_26215 -0.9 -2.7 ferredoxin compare
PS417_19430 -0.9 -1.1 ureidoglycolate hydrolase compare
PS417_26190 -0.9 -3.1 sarcosine oxidase subunit beta compare
PS417_12455 -0.9 -1.2 hydrolase compare
PS417_07595 -0.9 -1.5 PasA protein compare
PS417_23615 -0.9 -1.5 sulfate transporter compare
PS417_27155 -0.9 -0.7 aliphatic sulfonates transport ATP-binding subunit compare
PS417_15470 -0.9 -2.2 saccharopine dehydrogenase compare
PS417_13800 -0.9 -0.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23490 -0.9 -0.7 dihydrofolate reductase compare
PS417_16535 -0.9 -1.4 NUDIX hydrolase compare
PS417_08665 -0.9 -2.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_18165 -0.9 -1.3 membrane protein compare
PS417_13300 -0.9 -1.7 short-chain dehydrogenase compare
PS417_21760 -0.9 -0.9 hypothetical protein compare
PS417_12750 -0.9 -2.8 acriflavine resistance protein B compare
PS417_04715 -0.9 -2.2 Fe-S oxidoreductase compare
PS417_25390 -0.9 -2.2 MFS transporter compare
PS417_21270 -0.9 -0.9 translation initiation factor 2 compare
PS417_20985 -0.9 -0.5 porin compare
PS417_05100 -0.9 -0.8 RNA polymerase sigma factor compare
PS417_19490 -0.9 -2.0 mechanosensitive ion channel protein compare
PS417_10050 -0.8 -1.3 hypothetical protein compare
PS417_04530 -0.8 -1.3 glycerate dehydrogenase compare
PS417_23825 -0.8 -2.6 penicillin-binding protein compare
PS417_26635 -0.8 -2.3 hypothetical protein compare
PS417_27110 -0.8 -2.2 spermidine/putrescine ABC transporter permease compare
PS417_10955 -0.8 -2.3 porin compare
PS417_26645 -0.8 -0.9 chemotaxis protein compare
PS417_16870 -0.8 -1.4 short-chain dehydrogenase compare
PS417_27510 -0.8 -2.4 disulfide bond formation protein B compare
PS417_28020 -0.8 -1.8 chorismate--pyruvate lyase compare
PS417_19695 -0.8 -4.0 flagellar biosynthesis sigma factor compare


Specific Phenotypes

For 2 genes in this experiment