Experiment set18IT054 for Pseudomonas simiae WCS417

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Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_08220 -4.7 -1.6 epimerase compare
PS417_02280 -3.6 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_27795 -3.5 -1.2 orotate phosphoribosyltransferase compare
PS417_27245 -3.2 -5.3 aminotransferase DegT compare
PS417_16555 -3.1 -2.7 cupin compare
PS417_03560 -3.1 -2.0 GTP-binding protein compare
PS417_03260 -3.0 -1.2 5S ribosomal RNA compare
PS417_19790 -2.9 -3.7 ATP synthase compare
PS417_08125 -2.9 -1.0 prephenate dehydratase compare
PS417_18310 -2.8 -1.4 hypothetical protein compare
PS417_19955 -2.7 -1.8 hypothetical protein compare
PS417_21480 -2.6 -2.1 23S rRNA pseudouridylate synthase compare
PS417_04365 -2.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27870 -2.4 -5.1 ATP-dependent DNA helicase RecG compare
PS417_10985 -2.4 -1.4 NADH:flavin oxidoreductase compare
PS417_06375 -2.4 -1.1 deoxycytidine triphosphate deaminase compare
PS417_19705 -2.2 -3.4 flagellar biosynthesis regulator FlhF compare
PS417_23775 -2.2 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_23545 -2.2 -2.9 gamma-glutamyl kinase compare
PS417_08245 -2.1 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_11705 -2.1 -6.7 cyclic peptide transporter compare
PS417_21430 -2.1 -2.4 3-oxoacyl-ACP synthase compare
PS417_26370 -2.1 -4.9 RNA helicase compare
PS417_22570 -2.0 -1.2 H-NS histone compare
PS417_02575 -2.0 -5.1 membrane protein compare
PS417_08170 -1.9 -9.9 capsular biosynthesis protein compare
PS417_06680 -1.9 -6.9 nuclease PIN compare
PS417_24745 -1.8 -3.2 gamma-glutamyl phosphate reductase compare
PS417_02485 -1.8 -3.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20785 -1.7 -2.3 transcriptional regulator compare
PS417_26175 -1.7 -1.4 sarcosine oxidase subunit gamma compare
PS417_21125 -1.7 -5.6 phosphoadenosine phosphosulfate reductase compare
PS417_22450 -1.7 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_19765 -1.7 -6.8 flagellar hook-length control protein compare
PS417_19870 -1.7 -2.8 flagellar rod assembly protein FlgJ compare
PS417_19785 -1.6 -4.3 flagellar biogenesis protein compare
PS417_19865 -1.6 -9.0 flagellar hook protein FlgK compare
PS417_24705 -1.6 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_27315 -1.6 -1.6 hypothetical protein compare
PS417_02885 -1.5 -2.4 hypothetical protein compare
PS417_19350 -1.5 -4.5 GTP cyclohydrolase compare
PS417_19835 -1.5 -1.2 flagellar biosynthesis protein FliS compare
PS417_07170 -1.5 -3.3 hypothetical protein compare
PS417_05635 -1.5 -7.1 membrane protein compare
PS417_19825 -1.4 -9.1 ATPase AAA compare
PS417_22990 -1.4 -1.1 iron dicitrate transport regulator FecR compare
PS417_18235 -1.4 -3.0 nitrile hydratase compare
PS417_19885 -1.4 -2.3 flagellar basal body rod protein FlgG compare
PS417_19880 -1.4 -3.3 flagellar basal body L-ring protein compare
PS417_16980 -1.4 -3.9 exonuclease III compare
PS417_19695 -1.4 -5.1 flagellar biosynthesis sigma factor compare
PS417_02975 -1.4 -3.8 3-dehydroquinate dehydratase compare
PS417_00045 -1.4 -1.6 glycerol acyltransferase compare
PS417_20985 -1.3 -0.9 porin compare
PS417_21595 -1.3 -2.2 flagellar biosynthesis protein FlgN compare
PS417_03935 -1.3 -3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_22565 -1.3 -0.7 formyltetrahydrofolate deformylase compare
PS417_18105 -1.3 -1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_03380 -1.3 -1.3 hypothetical protein compare
PS417_26990 -1.3 -0.7 RNA pyrophosphohydrolase compare
PS417_08510 -1.3 -2.3 LysR family transcriptional regulator compare
PS417_00345 -1.3 -1.9 copper-binding protein compare
PS417_11430 -1.3 -4.9 EamA compare
PS417_19795 -1.3 -6.8 flagellar assembly protein FliH compare
PS417_25645 -1.2 -3.7 peptidase M23 compare
PS417_19860 -1.2 -7.7 flagellar hook protein FlgL compare
PS417_04865 -1.2 -2.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_21585 -1.2 -6.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_24835 -1.2 -2.4 hypothetical protein compare
PS417_26730 -1.2 -0.5 pyrroline-5-carboxylate reductase compare
PS417_27085 -1.2 -2.0 AraC family transcriptional regulator compare
PS417_25390 -1.2 -3.8 MFS transporter compare
PS417_02845 -1.2 -3.0 ABC transporter permease compare
PS417_20025 -1.2 -1.4 alpha-ribazole phosphatase compare
PS417_06530 -1.1 -2.1 membrane protein compare
PS417_08155 -1.1 -0.9 integration host factor subunit beta compare
PS417_08195 -1.1 -4.9 hypothetical protein compare
PS417_04290 -1.1 -2.7 hypothetical protein compare
PS417_02895 -1.1 -1.8 precorrin-6Y C5,15-methyltransferase compare
PS417_21555 -1.1 -3.6 flagellar hook protein FlgE compare
PS417_10025 -1.1 -1.3 bacteriophage lambda NinG family protein compare
PS417_04875 -1.1 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_08410 -1.1 -2.1 hypothetical protein compare
PS417_27425 -1.1 -4.3 exopolyphosphatase compare
PS417_07165 -1.1 -4.2 dihydrodipicolinate synthase compare
PS417_19655 -1.1 -2.4 chemotaxis protein CheW compare
PS417_23825 -1.0 -4.7 penicillin-binding protein compare
PS417_19690 -1.0 -3.4 histidine kinase compare
PS417_02555 -1.0 -6.5 exoribonuclease R compare
PS417_27135 -1.0 -0.6 glutamine synthetase compare
PS417_12820 -1.0 -2.4 hypothetical protein compare
PS417_19820 -1.0 -3.9 histidine kinase compare
PS417_00385 -1.0 -0.9 Fur family transcriptional regulator compare
PS417_19660 -1.0 -5.3 cobalamin biosynthesis protein CobQ compare
PS417_14125 -1.0 -2.9 molybdenum ABC transporter ATP-binding protein compare
PS417_17070 -1.0 -1.6 RNA polymerase subunit sigma-24 compare
PS417_28030 -1.0 -2.9 hypothetical protein compare
PS417_01955 -1.0 -5.0 peptidase compare
PS417_02560 -1.0 -1.7 23S rRNA methyltransferase compare
PS417_04375 -1.0 -1.3 ABC transporter ATP-binding protein compare
PS417_10010 -1.0 -2.8 Replication protein P compare
PS417_23170 -1.0 -1.6 FeS assembly protein IscX compare
PS417_13075 -1.0 -1.3 hypothetical protein compare
PS417_07865 -1.0 -1.2 hypothetical protein compare
PS417_03470 -0.9 -2.2 ATP synthase compare
PS417_22840 -0.9 -1.5 tRNA-Met compare
PS417_11945 -0.9 -1.6 hypothetical protein compare
PS417_02915 -0.9 -2.2 precorrin-3B C17-methyltransferase compare
PS417_20650 -0.9 -4.8 hypothetical protein compare
PS417_13620 -0.9 -1.3 thermostable hemolysin compare
PS417_24615 -0.9 -0.6 hypothetical protein compare
PS417_21570 -0.9 -2.6 flagellar basal body rod protein FlgB compare
PS417_17000 -0.9 -1.3 MerR family transcriptional regulator compare
PS417_01620 -0.9 -1.5 preprotein translocase subunit SecB compare
PS417_11435 -0.9 -5.3 asparagine synthase compare
PS417_19725 -0.9 -2.1 flagellar biosynthesis protein FlhB compare
PS417_21915 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_07300 -0.9 -3.8 LysR family transcriptional regulator compare
PS417_15775 -0.9 -1.6 short-chain dehydrogenase compare
PS417_10125 -0.9 -2.3 hypothetical protein compare
PS417_19665 -0.9 -1.9 flagellar motor protein MotD compare
PS417_03300 -0.8 -1.7 alanine acetyltransferase compare
PS417_13055 -0.8 -1.0 aminotransferase compare
PS417_10265 -0.8 -1.7 peptidase compare
PS417_10405 -0.8 -0.9 filamentous hemagglutinin compare
PS417_11405 -0.8 -2.6 precorrin 6A synthase compare
PS417_10535 -0.8 -1.9 hypothetical protein compare
PS417_27155 -0.8 -1.2 aliphatic sulfonates transport ATP-binding subunit compare
PS417_10665 -0.8 -1.4 hypothetical protein compare
PS417_11180 -0.8 -1.6 TetR family transcriptional regulator compare
PS417_12015 -0.8 -2.1 phosphoglycerate mutase compare
PS417_08190 -0.8 -5.4 membrane protein compare
PS417_08185 -0.8 -2.5 glycosyl transferase compare
PS417_27815 -0.8 -0.8 hypothetical protein compare
PS417_01145 -0.8 -0.7 taurine transporter ATP-binding subunit compare
PS417_08110 -0.8 -3.1 methylthioribose-1-phosphate isomerase compare
PS417_17035 -0.8 -0.9 Cro/Cl family transcriptional regulator compare
PS417_02270 -0.8 -1.7 carbamoyltransferase compare
PS417_21420 -0.8 -5.2 aminodeoxychorismate lyase compare
PS417_18490 -0.8 -0.9 hypothetical protein compare
PS417_28325 -0.8 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_05025 -0.8 -1.4 maleylacetoacetate isomerase compare
PS417_02870 -0.8 -3.6 TonB-dependent receptor compare
PS417_21560 -0.8 -2.8 flagellar basal body rod modification protein FlgD compare
PS417_24935 -0.8 -0.8 hypothetical protein compare
PS417_22575 -0.7 -4.0 exonuclease I compare
PS417_21565 -0.7 -1.1 flagellar basal body rod protein FlgC compare
PS417_03790 -0.7 -2.6 pilus assembly protein PilW compare
PS417_16715 -0.7 -1.1 DoxX family protein compare
PS417_18150 -0.7 -2.1 chemotaxis protein CheY compare
PS417_17830 -0.7 -1.8 4-hydroxyphenylacetate isomerase compare
PS417_04585 -0.7 -1.0 hypothetical protein compare
PS417_21575 -0.7 -4.3 chemotaxis protein compare
PS417_10220 -0.7 -2.2 hypothetical protein compare
PS417_23025 -0.7 -2.3 murein transglycosylase compare
PS417_27940 -0.7 -1.1 type VI secretion protein compare
PS417_05880 -0.7 -3.0 ribosomal protein S12 methylthiotransferase compare
PS417_20095 -0.7 -5.9 hypothetical protein compare
PS417_15325 -0.7 -0.8 type VI secretion protein compare
PS417_04390 -0.7 -2.5 toluene tolerance protein compare
PS417_15770 -0.7 -0.8 pyridoxine 5'-phosphate oxidase compare
PS417_24355 -0.7 -1.8 MFS transporter compare
PS417_12325 -0.7 -2.7 precorrin-4 C11-methyltransferase compare
PS417_02740 -0.7 -0.9 LysR family transcriptional regulator compare
PS417_08205 -0.7 -1.5 acetyltransferase compare
PS417_22445 -0.7 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_19760 -0.7 -2.3 flagellar basal body protein FliL compare
PS417_06465 -0.7 -1.1 transcriptional regulator compare
PS417_01130 -0.7 -2.1 L-glyceraldehyde 3-phosphate reductase compare
PS417_13240 -0.7 -1.9 siderophore biosynthesis protein compare
PS417_28425 -0.7 -2.4 lysine transporter LysE compare
PS417_19295 -0.7 -2.7 hypothetical protein compare
PS417_01580 -0.7 -1.0 imidazole glycerol phosphate synthase compare
PS417_23770 -0.7 -0.5 exodeoxyribonuclease V subunit alpha compare
PS417_18570 -0.7 -2.2 peptidoglycan-binding protein compare
PS417_23915 -0.7 -2.3 pantoate--beta-alanine ligase compare
PS417_01585 -0.7 -1.8 amino acid ABC transporter substrate-binding protein compare
PS417_21850 -0.7 -0.8 LysR family transcriptional regulator compare
PS417_22520 -0.7 -1.0 histidine kinase compare
PS417_01605 -0.7 -0.6 phosphoglycerate mutase compare
PS417_04220 -0.7 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_24710 -0.7 -3.3 lipoprotein compare
PS417_27100 -0.7 -1.5 phosphohydrolase compare
PS417_15495 -0.7 -1.0 FAD-dependent oxidoreductase compare
PS417_10040 -0.7 -0.6 MFS transporter compare
PS417_02225 -0.7 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24500 -0.7 -1.1 DEAD/DEAH box helicase compare
PS417_12310 -0.7 -2.8 methionine synthase compare
PS417_14115 -0.7 -2.5 molybdate ABC transporter substrate-binding protein compare
PS417_08320 -0.7 -1.4 metal-chelation protein CHAD compare
PS417_20090 -0.7 -3.6 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_19645 -0.7 -1.3 chemotaxis protein compare
PS417_23250 -0.7 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_12585 -0.7 -3.2 acriflavine resistance protein B compare
PS417_10120 -0.7 -2.4 hypothetical protein compare
PS417_21255 -0.7 -1.3 hypothetical protein compare
PS417_19325 -0.7 -1.6 hypothetical protein compare
PS417_19615 -0.7 -3.4 chemotaxis protein CheW compare
PS417_10050 -0.7 -0.9 hypothetical protein compare
PS417_02035 -0.7 -1.8 3-ketoacyl-ACP reductase compare


Specific Phenotypes

For 3 genes in this experiment