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Experiment set18IT053 for
Pseudomonas simiae WCS417
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Parafilmed volatile agar plate with no fungus
200 most important genes:
gene
name
fitness
t score
description
PS417
_06375
-4.0
-1.3
deoxycytidine triphosphate deaminase
compare
PS417
_22565
-3.7
-1.2
formyltetrahydrofolate deformylase
compare
PS417
_24745
-3.6
-2.3
gamma-glutamyl phosphate reductase
compare
PS417
_27795
-3.5
-1.2
orotate phosphoribosyltransferase
compare
PS417
_08220
-3.2
-1.5
epimerase
compare
PS417
_23775
-3.0
-2.7
exodeoxyribonuclease V subunit beta
compare
PS417
_03260
-3.0
-1.3
5S ribosomal RNA
compare
PS417
_22520
-2.9
-1.8
histidine kinase
compare
PS417
_19835
-2.5
-1.9
flagellar biosynthesis protein FliS
compare
PS417
_23545
-2.5
-1.9
gamma-glutamyl kinase
compare
PS417
_08025
-2.5
-1.9
acetylornithine aminotransferase
compare
PS417
_11705
-2.5
-9.6
cyclic peptide transporter
compare
PS417
_27870
-2.5
-4.2
ATP-dependent DNA helicase RecG
compare
PS417
_26990
-2.4
-1.1
RNA pyrophosphohydrolase
compare
PS417
_27195
-2.3
-1.8
N-acetylglutamate synthase
compare
PS417
_16555
-2.3
-2.4
cupin
compare
PS417
_16490
-2.3
-1.7
cell division protein FtsK
compare
PS417
_02880
-2.3
-1.4
copper chaperone
compare
PS417
_04380
-2.0
-1.1
ABC transporter permease
compare
PS417
_24835
-2.0
-5.0
hypothetical protein
compare
PS417
_11430
-2.0
-5.7
EamA
compare
PS417
_06370
-2.0
-1.8
cold-shock protein
compare
PS417
_08170
-1.9
-9.9
capsular biosynthesis protein
compare
PS417
_06680
-1.9
-7.0
nuclease PIN
compare
PS417
_02485
-1.9
-5.3
tRNA delta(2)-isopentenylpyrophosphate transferase
compare
PS417
_06685
-1.9
-1.0
beta-ketoadipyl CoA thiolase
compare
PS417
_21430
-1.9
-2.2
3-oxoacyl-ACP synthase
compare
PS417
_24500
-1.9
-3.7
DEAD/DEAH box helicase
compare
PS417
_20785
-1.8
-3.4
transcriptional regulator
compare
PS417
_04290
-1.8
-3.4
hypothetical protein
compare
PS417
_22450
-1.8
-1.5
ATP-dependent DNA helicase RuvA
compare
PS417
_01290
-1.7
-1.6
ADP-ribose diphosphatase
compare
PS417
_19690
-1.7
-4.7
histidine kinase
compare
PS417
_06500
-1.7
-1.2
hypothetical protein
compare
PS417
_26175
-1.6
-1.1
sarcosine oxidase subunit gamma
compare
PS417
_01605
-1.6
-1.0
phosphoglycerate mutase
compare
PS417
_26370
-1.6
-2.4
RNA helicase
compare
PS417
_19660
-1.6
-5.3
cobalamin biosynthesis protein CobQ
compare
PS417
_19655
-1.6
-3.2
chemotaxis protein CheW
compare
PS417
_22570
-1.6
-1.0
H-NS histone
compare
PS417
_19955
-1.6
-2.1
hypothetical protein
compare
PS417
_09420
-1.5
-2.3
LysR family transcriptional regulator
compare
PS417
_08225
-1.5
-3.7
acetolactate synthase
compare
PS417
_02575
-1.5
-2.4
membrane protein
compare
PS417
_21125
-1.5
-4.9
phosphoadenosine phosphosulfate reductase
compare
PS417
_20985
-1.5
-1.0
porin
compare
PS417
_00510
-1.5
-1.2
membrane protein
compare
PS417
_19065
-1.5
-1.0
monooxygenase
compare
PS417
_27315
-1.5
-1.2
hypothetical protein
compare
PS417
_27800
-1.4
-1.4
exodeoxyribonuclease III
compare
PS417
_07710
-1.4
-4.2
membrane protein
compare
PS417
_02865
-1.4
-3.3
peptidase
compare
PS417
_26240
-1.4
-2.2
N-methylproline demethylase
compare
PS417
_26120
-1.4
-2.0
hypothetical protein
compare
PS417
_19880
-1.4
-5.5
flagellar basal body L-ring protein
compare
PS417
_07640
-1.4
-3.1
glyceraldehyde-3-phosphate dehydrogenase
compare
PS417
_21850
-1.4
-1.3
LysR family transcriptional regulator
compare
PS417
_16885
-1.4
-3.3
hypothetical protein
compare
PS417
_14125
-1.4
-3.9
molybdenum ABC transporter ATP-binding protein
compare
PS417
_05165
-1.4
-3.0
cytosol aminopeptidase
compare
PS417
_27245
-1.4
-2.4
aminotransferase DegT
compare
PS417
_08245
-1.4
-1.0
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase
compare
PS417
_00345
-1.3
-2.0
copper-binding protein
compare
PS417
_01620
-1.3
-2.4
preprotein translocase subunit SecB
compare
PS417
_27425
-1.3
-5.4
exopolyphosphatase
compare
PS417
_01955
-1.3
-6.4
peptidase
compare
PS417
_19765
-1.3
-6.5
flagellar hook-length control protein
compare
PS417
_08580
-1.3
-4.4
histidine kinase
compare
PS417
_03560
-1.3
-1.1
GTP-binding protein
compare
PS417
_22445
-1.3
-1.9
ATP-dependent DNA helicase RuvB
compare
PS417
_05695
-1.3
-3.5
transcriptional regulator
compare
PS417
_19350
-1.3
-4.3
GTP cyclohydrolase
compare
PS417
_04390
-1.3
-2.4
toluene tolerance protein
compare
PS417
_22815
-1.3
-6.2
permease
compare
PS417
_04365
-1.3
-1.0
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
compare
PS417
_03465
-1.3
-1.8
type III secretion protein
compare
PS417
_08185
-1.2
-2.7
glycosyl transferase
compare
PS417
_19860
-1.2
-7.3
flagellar hook protein FlgL
compare
PS417
_19650
-1.2
-4.0
chemotaxis protein CheW
compare
PS417
_19785
-1.2
-3.3
flagellar biogenesis protein
compare
PS417
_20650
-1.2
-5.1
hypothetical protein
compare
PS417
_02555
-1.2
-7.3
exoribonuclease R
compare
PS417
_25645
-1.2
-3.8
peptidase M23
compare
PS417
_04385
-1.2
-2.4
organic solvent ABC transporter substrate-binding protein
compare
PS417
_13055
-1.2
-2.1
aminotransferase
compare
PS417
_18310
-1.2
-1.4
hypothetical protein
compare
PS417
_20755
-1.2
-3.0
membrane protein
compare
PS417
_08135
-1.2
-2.8
3-phosphoshikimate 1-carboxyvinyltransferase
compare
PS417
_19795
-1.2
-6.4
flagellar assembly protein FliH
compare
PS417
_00180
-1.2
-1.6
tryptophan synthase subunit alpha
compare
PS417
_23825
-1.2
-4.5
penicillin-binding protein
compare
PS417
_27595
-1.2
-2.1
recombinase XerC
compare
PS417
_15495
-1.1
-2.1
FAD-dependent oxidoreductase
compare
PS417
_19825
-1.1
-7.1
ATPase AAA
compare
PS417
_25315
-1.1
-2.3
membrane protein
compare
PS417
_23095
-1.1
-1.0
exodeoxyribonuclease
compare
PS417
_21555
-1.1
-7.1
flagellar hook protein FlgE
compare
PS417
_19605
-1.1
-1.0
hypothetical protein
compare
PS417
_19885
-1.1
-2.5
flagellar basal body rod protein FlgG
compare
PS417
_08620
-1.1
-1.0
hypothetical protein
compare
PS417
_00045
-1.1
-1.4
glycerol acyltransferase
compare
PS417
_05025
-1.1
-1.8
maleylacetoacetate isomerase
compare
PS417
_27135
-1.1
-0.6
glutamine synthetase
compare
PS417
_07165
-1.1
-3.4
dihydrodipicolinate synthase
compare
PS417
_19665
-1.1
-2.4
flagellar motor protein MotD
compare
PS417
_27865
-1.1
-1.9
LysR family transcriptional regulator
compare
PS417
_08730
-1.1
-1.4
cytochrome C
compare
PS417
_27005
-1.1
-0.9
membrane protein
compare
PS417
_10520
-1.1
-3.5
succinyl-CoA:3-ketoacid-CoA transferase
compare
PS417
_04440
-1.1
-1.7
hypoxanthine-guanine phosphoribosyltransferase
compare
PS417
_19850
-1.1
-3.8
branched-chain alpha-keto acid dehydrogenase subunit E2
compare
PS417
_01715
-1.1
-0.8
hypothetical protein
compare
PS417
_21570
-1.1
-5.0
flagellar basal body rod protein FlgB
compare
PS417
_24535
-1.1
-1.9
membrane protein
compare
PS417
_07820
-1.1
-1.3
transposase
compare
PS417
_08200
-1.1
-2.4
hypothetical protein
compare
PS417
_27815
-1.1
-1.3
hypothetical protein
compare
PS417
_19830
-1.0
-2.2
flagellar assembly protein FliT
compare
PS417
_19675
-1.0
-3.1
chemotaxis protein CheY
compare
PS417
_11945
-1.0
-1.8
hypothetical protein
compare
PS417
_03000
-1.0
-2.3
translation initiation factor Sui1
compare
PS417
_19760
-1.0
-3.1
flagellar basal body protein FliL
compare
PS417
_14065
-1.0
-5.4
UTP--glucose-1-phosphate uridylyltransferase
compare
PS417
_21420
-1.0
-6.1
aminodeoxychorismate lyase
compare
PS417
_02975
-1.0
-2.9
3-dehydroquinate dehydratase
compare
PS417
_16510
-1.0
-2.6
Clp protease ClpX
compare
PS417
_08205
-1.0
-3.0
acetyltransferase
compare
PS417
_24710
-1.0
-3.6
lipoprotein
compare
PS417
_08320
-1.0
-2.0
metal-chelation protein CHAD
compare
PS417
_21565
-1.0
-3.3
flagellar basal body rod protein FlgC
compare
PS417
_13140
-1.0
-1.7
oxidoreductase
compare
PS417
_22210
-1.0
-1.3
AraC family transcriptional regulator
compare
PS417
_06145
-1.0
-0.8
hypothetical protein
compare
PS417
_26470
-1.0
-1.5
cytochrome C
compare
PS417
_01030
-1.0
-1.4
glutamine ABC transporter substrate-binding protein
compare
PS417
_26685
-1.0
-1.9
hypothetical protein
compare
PS417
_10025
-1.0
-1.1
bacteriophage lambda NinG family protein
compare
PS417
_09245
-0.9
-1.3
recombinase RdgC
compare
PS417
_13075
-0.9
-1.0
hypothetical protein
compare
PS417
_02560
-0.9
-0.9
23S rRNA methyltransferase
compare
PS417
_21585
-0.9
-4.8
flagellar basal body P-ring biosynthesis protein FlgA
compare
PS417
_02955
-0.9
-3.9
hypothetical protein
compare
PS417
_08665
-0.9
-3.4
molybdopterin-guanine dinucleotide biosynthesis protein A
compare
PS417
_21990
-0.9
-1.6
LacI family transcriptional regulator
compare
PS417
_04865
-0.9
-2.8
molybdenum cofactor biosynthesis protein MoaC
compare
PS417
_02280
-0.9
-1.3
GlcNAc-PI de-N-acetylase
compare
PS417
_15305
-0.9
-2.6
type VI secretion protein
compare
PS417
_19840
-0.9
-3.7
flagellar cap protein FliD
compare
PS417
_24705
-0.9
-1.8
D-alanyl-D-alanine carboxypeptidase
compare
PS417
_10870
-0.9
-2.3
GABA permease
compare
PS417
_27340
-0.9
-2.8
NADPH:quinone oxidoreductase
compare
PS417
_21915
-0.9
-1.7
LysR family transcriptional regulator
compare
PS417
_12110
-0.9
-1.3
ATP-binding protein
compare
PS417
_21000
-0.9
-1.2
CrfX protein
compare
PS417
_08190
-0.9
-5.3
membrane protein
compare
PS417
_21830
-0.9
-1.4
TetR family transcriptional regulator
compare
PS417
_02225
-0.9
-2.1
bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
compare
PS417
_04960
-0.9
-1.4
hypothetical protein
compare
PS417
_24785
-0.9
-1.0
nucleoside-diphosphate sugar epimerase
compare
PS417
_08195
-0.9
-4.4
hypothetical protein
compare
PS417
_01875
-0.9
-1.5
polyhydroxyalkanoic acid system protein
compare
PS417
_23770
-0.9
-0.6
exodeoxyribonuclease V subunit alpha
compare
PS417
_19325
-0.9
-1.6
hypothetical protein
compare
PS417
_07620
-0.8
-1.3
beta-hexosaminidase
compare
PS417
_00580
-0.8
-3.0
acyl-CoA dehydrogenase
compare
PS417
_01630
-0.8
-1.0
hypothetical protein
compare
PS417
_23755
-0.8
-1.0
membrane protein
compare
PS417
_22895
-0.8
-3.7
tyrosine recombinase XerD
compare
PS417
_02720
-0.8
-0.6
TetR family transcriptional regulator
compare
PS417
_22380
-0.8
-3.3
hypothetical protein
compare
PS417
_19865
-0.8
-2.8
flagellar hook protein FlgK
compare
PS417
_23250
-0.8
-3.8
S-adenosylmethionine tRNA ribosyltransferase
compare
PS417
_15820
-0.8
-1.7
universal stress protein UspA
compare
PS417
_18425
-0.8
-1.1
sporulation protein
compare
PS417
_01850
-0.8
-2.7
phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
(from data)
compare
PS417
_00220
-0.8
-1.2
hypothetical protein
compare
PS417
_15505
-0.8
-2.0
glutaminase
compare
PS417
_27065
-0.8
-2.5
hypothetical protein
compare
PS417
_12310
-0.8
-3.8
methionine synthase
compare
PS417
_07245
-0.8
-1.4
2-deoxy-D-ribonate 3-dehydrogenase
(from data)
compare
PS417
_13195
-0.8
-1.0
RND transporter MFP subunit
compare
PS417
_12015
-0.8
-2.1
phosphoglycerate mutase
compare
PS417
_27085
-0.8
-1.7
AraC family transcriptional regulator
compare
PS417
_22575
-0.8
-4.2
exonuclease I
compare
PS417
_20035
-0.8
-3.3
adenosylcobinamide kinase
compare
PS417
_07560
-0.8
-0.8
universal stress protein UspA
compare
PS417
_15540
-0.8
-1.0
NUDIX hydrolase
compare
PS417
_13870
-0.8
-2.0
hypothetical protein
compare
PS417
_11405
-0.8
-2.1
precorrin 6A synthase
compare
PS417
_19425
-0.8
-0.6
allantoicase
compare
PS417
_04875
-0.8
-1.0
molybdenum cofactor biosynthesis protein MoaE
compare
PS417
_14120
-0.8
-3.8
molybdenum ABC transporter permease
compare
PS417
_02695
-0.8
-1.1
protein hupE
compare
PS417
_22050
-0.8
-2.2
ribonuclease BN
compare
PS417
_01045
-0.8
-1.8
RND transporter
compare
PS417
_13255
-0.8
-0.8
ABC transporter
compare
PS417
_21560
-0.8
-2.7
flagellar basal body rod modification protein FlgD
compare
PS417
_03685
-0.8
-1.9
FAD-dependent oxidoreductase
compare
PS417
_26265
-0.8
-1.3
hypothetical protein
compare
PS417
_27075
-0.7
-1.6
thiol-disulfide isomerase
compare
Specific Phenotypes
For 4 genes in this experiment