Experiment set18IT053 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.0 -1.3 deoxycytidine triphosphate deaminase compare
PS417_22565 -3.7 -1.2 formyltetrahydrofolate deformylase compare
PS417_24745 -3.6 -2.3 gamma-glutamyl phosphate reductase compare
PS417_27795 -3.5 -1.2 orotate phosphoribosyltransferase compare
PS417_08220 -3.2 -1.5 epimerase compare
PS417_23775 -3.0 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_03260 -3.0 -1.3 5S ribosomal RNA compare
PS417_22520 -2.9 -1.8 histidine kinase compare
PS417_19835 -2.5 -1.9 flagellar biosynthesis protein FliS compare
PS417_23545 -2.5 -1.9 gamma-glutamyl kinase compare
PS417_08025 -2.5 -1.9 acetylornithine aminotransferase compare
PS417_11705 -2.5 -9.6 cyclic peptide transporter compare
PS417_27870 -2.5 -4.2 ATP-dependent DNA helicase RecG compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_27195 -2.3 -1.8 N-acetylglutamate synthase compare
PS417_16555 -2.3 -2.4 cupin compare
PS417_16490 -2.3 -1.7 cell division protein FtsK compare
PS417_02880 -2.3 -1.4 copper chaperone compare
PS417_04380 -2.0 -1.1 ABC transporter permease compare
PS417_24835 -2.0 -5.0 hypothetical protein compare
PS417_11430 -2.0 -5.7 EamA compare
PS417_06370 -2.0 -1.8 cold-shock protein compare
PS417_08170 -1.9 -9.9 capsular biosynthesis protein compare
PS417_06680 -1.9 -7.0 nuclease PIN compare
PS417_02485 -1.9 -5.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06685 -1.9 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_21430 -1.9 -2.2 3-oxoacyl-ACP synthase compare
PS417_24500 -1.9 -3.7 DEAD/DEAH box helicase compare
PS417_20785 -1.8 -3.4 transcriptional regulator compare
PS417_04290 -1.8 -3.4 hypothetical protein compare
PS417_22450 -1.8 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_01290 -1.7 -1.6 ADP-ribose diphosphatase compare
PS417_19690 -1.7 -4.7 histidine kinase compare
PS417_06500 -1.7 -1.2 hypothetical protein compare
PS417_26175 -1.6 -1.1 sarcosine oxidase subunit gamma compare
PS417_01605 -1.6 -1.0 phosphoglycerate mutase compare
PS417_26370 -1.6 -2.4 RNA helicase compare
PS417_19660 -1.6 -5.3 cobalamin biosynthesis protein CobQ compare
PS417_19655 -1.6 -3.2 chemotaxis protein CheW compare
PS417_22570 -1.6 -1.0 H-NS histone compare
PS417_19955 -1.6 -2.1 hypothetical protein compare
PS417_09420 -1.5 -2.3 LysR family transcriptional regulator compare
PS417_08225 -1.5 -3.7 acetolactate synthase compare
PS417_02575 -1.5 -2.4 membrane protein compare
PS417_21125 -1.5 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_20985 -1.5 -1.0 porin compare
PS417_00510 -1.5 -1.2 membrane protein compare
PS417_19065 -1.5 -1.0 monooxygenase compare
PS417_27315 -1.5 -1.2 hypothetical protein compare
PS417_27800 -1.4 -1.4 exodeoxyribonuclease III compare
PS417_07710 -1.4 -4.2 membrane protein compare
PS417_02865 -1.4 -3.3 peptidase compare
PS417_26240 -1.4 -2.2 N-methylproline demethylase compare
PS417_26120 -1.4 -2.0 hypothetical protein compare
PS417_19880 -1.4 -5.5 flagellar basal body L-ring protein compare
PS417_07640 -1.4 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21850 -1.4 -1.3 LysR family transcriptional regulator compare
PS417_16885 -1.4 -3.3 hypothetical protein compare
PS417_14125 -1.4 -3.9 molybdenum ABC transporter ATP-binding protein compare
PS417_05165 -1.4 -3.0 cytosol aminopeptidase compare
PS417_27245 -1.4 -2.4 aminotransferase DegT compare
PS417_08245 -1.4 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_00345 -1.3 -2.0 copper-binding protein compare
PS417_01620 -1.3 -2.4 preprotein translocase subunit SecB compare
PS417_27425 -1.3 -5.4 exopolyphosphatase compare
PS417_01955 -1.3 -6.4 peptidase compare
PS417_19765 -1.3 -6.5 flagellar hook-length control protein compare
PS417_08580 -1.3 -4.4 histidine kinase compare
PS417_03560 -1.3 -1.1 GTP-binding protein compare
PS417_22445 -1.3 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_05695 -1.3 -3.5 transcriptional regulator compare
PS417_19350 -1.3 -4.3 GTP cyclohydrolase compare
PS417_04390 -1.3 -2.4 toluene tolerance protein compare
PS417_22815 -1.3 -6.2 permease compare
PS417_04365 -1.3 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_03465 -1.3 -1.8 type III secretion protein compare
PS417_08185 -1.2 -2.7 glycosyl transferase compare
PS417_19860 -1.2 -7.3 flagellar hook protein FlgL compare
PS417_19650 -1.2 -4.0 chemotaxis protein CheW compare
PS417_19785 -1.2 -3.3 flagellar biogenesis protein compare
PS417_20650 -1.2 -5.1 hypothetical protein compare
PS417_02555 -1.2 -7.3 exoribonuclease R compare
PS417_25645 -1.2 -3.8 peptidase M23 compare
PS417_04385 -1.2 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_13055 -1.2 -2.1 aminotransferase compare
PS417_18310 -1.2 -1.4 hypothetical protein compare
PS417_20755 -1.2 -3.0 membrane protein compare
PS417_08135 -1.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19795 -1.2 -6.4 flagellar assembly protein FliH compare
PS417_00180 -1.2 -1.6 tryptophan synthase subunit alpha compare
PS417_23825 -1.2 -4.5 penicillin-binding protein compare
PS417_27595 -1.2 -2.1 recombinase XerC compare
PS417_15495 -1.1 -2.1 FAD-dependent oxidoreductase compare
PS417_19825 -1.1 -7.1 ATPase AAA compare
PS417_25315 -1.1 -2.3 membrane protein compare
PS417_23095 -1.1 -1.0 exodeoxyribonuclease compare
PS417_21555 -1.1 -7.1 flagellar hook protein FlgE compare
PS417_19605 -1.1 -1.0 hypothetical protein compare
PS417_19885 -1.1 -2.5 flagellar basal body rod protein FlgG compare
PS417_08620 -1.1 -1.0 hypothetical protein compare
PS417_00045 -1.1 -1.4 glycerol acyltransferase compare
PS417_05025 -1.1 -1.8 maleylacetoacetate isomerase compare
PS417_27135 -1.1 -0.6 glutamine synthetase compare
PS417_07165 -1.1 -3.4 dihydrodipicolinate synthase compare
PS417_19665 -1.1 -2.4 flagellar motor protein MotD compare
PS417_27865 -1.1 -1.9 LysR family transcriptional regulator compare
PS417_08730 -1.1 -1.4 cytochrome C compare
PS417_27005 -1.1 -0.9 membrane protein compare
PS417_10520 -1.1 -3.5 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_04440 -1.1 -1.7 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_19850 -1.1 -3.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01715 -1.1 -0.8 hypothetical protein compare
PS417_21570 -1.1 -5.0 flagellar basal body rod protein FlgB compare
PS417_24535 -1.1 -1.9 membrane protein compare
PS417_07820 -1.1 -1.3 transposase compare
PS417_08200 -1.1 -2.4 hypothetical protein compare
PS417_27815 -1.1 -1.3 hypothetical protein compare
PS417_19830 -1.0 -2.2 flagellar assembly protein FliT compare
PS417_19675 -1.0 -3.1 chemotaxis protein CheY compare
PS417_11945 -1.0 -1.8 hypothetical protein compare
PS417_03000 -1.0 -2.3 translation initiation factor Sui1 compare
PS417_19760 -1.0 -3.1 flagellar basal body protein FliL compare
PS417_14065 -1.0 -5.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21420 -1.0 -6.1 aminodeoxychorismate lyase compare
PS417_02975 -1.0 -2.9 3-dehydroquinate dehydratase compare
PS417_16510 -1.0 -2.6 Clp protease ClpX compare
PS417_08205 -1.0 -3.0 acetyltransferase compare
PS417_24710 -1.0 -3.6 lipoprotein compare
PS417_08320 -1.0 -2.0 metal-chelation protein CHAD compare
PS417_21565 -1.0 -3.3 flagellar basal body rod protein FlgC compare
PS417_13140 -1.0 -1.7 oxidoreductase compare
PS417_22210 -1.0 -1.3 AraC family transcriptional regulator compare
PS417_06145 -1.0 -0.8 hypothetical protein compare
PS417_26470 -1.0 -1.5 cytochrome C compare
PS417_01030 -1.0 -1.4 glutamine ABC transporter substrate-binding protein compare
PS417_26685 -1.0 -1.9 hypothetical protein compare
PS417_10025 -1.0 -1.1 bacteriophage lambda NinG family protein compare
PS417_09245 -0.9 -1.3 recombinase RdgC compare
PS417_13075 -0.9 -1.0 hypothetical protein compare
PS417_02560 -0.9 -0.9 23S rRNA methyltransferase compare
PS417_21585 -0.9 -4.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_02955 -0.9 -3.9 hypothetical protein compare
PS417_08665 -0.9 -3.4 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_21990 -0.9 -1.6 LacI family transcriptional regulator compare
PS417_04865 -0.9 -2.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_02280 -0.9 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_15305 -0.9 -2.6 type VI secretion protein compare
PS417_19840 -0.9 -3.7 flagellar cap protein FliD compare
PS417_24705 -0.9 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_10870 -0.9 -2.3 GABA permease compare
PS417_27340 -0.9 -2.8 NADPH:quinone oxidoreductase compare
PS417_21915 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_12110 -0.9 -1.3 ATP-binding protein compare
PS417_21000 -0.9 -1.2 CrfX protein compare
PS417_08190 -0.9 -5.3 membrane protein compare
PS417_21830 -0.9 -1.4 TetR family transcriptional regulator compare
PS417_02225 -0.9 -2.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04960 -0.9 -1.4 hypothetical protein compare
PS417_24785 -0.9 -1.0 nucleoside-diphosphate sugar epimerase compare
PS417_08195 -0.9 -4.4 hypothetical protein compare
PS417_01875 -0.9 -1.5 polyhydroxyalkanoic acid system protein compare
PS417_23770 -0.9 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_19325 -0.9 -1.6 hypothetical protein compare
PS417_07620 -0.8 -1.3 beta-hexosaminidase compare
PS417_00580 -0.8 -3.0 acyl-CoA dehydrogenase compare
PS417_01630 -0.8 -1.0 hypothetical protein compare
PS417_23755 -0.8 -1.0 membrane protein compare
PS417_22895 -0.8 -3.7 tyrosine recombinase XerD compare
PS417_02720 -0.8 -0.6 TetR family transcriptional regulator compare
PS417_22380 -0.8 -3.3 hypothetical protein compare
PS417_19865 -0.8 -2.8 flagellar hook protein FlgK compare
PS417_23250 -0.8 -3.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_15820 -0.8 -1.7 universal stress protein UspA compare
PS417_18425 -0.8 -1.1 sporulation protein compare
PS417_01850 -0.8 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00220 -0.8 -1.2 hypothetical protein compare
PS417_15505 -0.8 -2.0 glutaminase compare
PS417_27065 -0.8 -2.5 hypothetical protein compare
PS417_12310 -0.8 -3.8 methionine synthase compare
PS417_07245 -0.8 -1.4 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_13195 -0.8 -1.0 RND transporter MFP subunit compare
PS417_12015 -0.8 -2.1 phosphoglycerate mutase compare
PS417_27085 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_22575 -0.8 -4.2 exonuclease I compare
PS417_20035 -0.8 -3.3 adenosylcobinamide kinase compare
PS417_07560 -0.8 -0.8 universal stress protein UspA compare
PS417_15540 -0.8 -1.0 NUDIX hydrolase compare
PS417_13870 -0.8 -2.0 hypothetical protein compare
PS417_11405 -0.8 -2.1 precorrin 6A synthase compare
PS417_19425 -0.8 -0.6 allantoicase compare
PS417_04875 -0.8 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_14120 -0.8 -3.8 molybdenum ABC transporter permease compare
PS417_02695 -0.8 -1.1 protein hupE compare
PS417_22050 -0.8 -2.2 ribonuclease BN compare
PS417_01045 -0.8 -1.8 RND transporter compare
PS417_13255 -0.8 -0.8 ABC transporter compare
PS417_21560 -0.8 -2.7 flagellar basal body rod modification protein FlgD compare
PS417_03685 -0.8 -1.9 FAD-dependent oxidoreductase compare
PS417_26265 -0.8 -1.3 hypothetical protein compare
PS417_27075 -0.7 -1.6 thiol-disulfide isomerase compare


Specific Phenotypes

For 4 genes in this experiment