Experiment set18IT052 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_06685 -3.9 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_27870 -3.5 -4.7 ATP-dependent DNA helicase RecG compare
PS417_22565 -3.4 -1.1 formyltetrahydrofolate deformylase compare
PS417_27795 -3.2 -1.1 orotate phosphoribosyltransferase compare
PS417_11430 -2.7 -7.5 EamA compare
PS417_08125 -2.6 -0.9 prephenate dehydratase compare
PS417_08410 -2.5 -2.6 hypothetical protein compare
PS417_24745 -2.4 -3.3 gamma-glutamyl phosphate reductase compare
PS417_01915 -2.4 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26370 -2.2 -4.1 RNA helicase compare
PS417_06375 -2.2 -1.0 deoxycytidine triphosphate deaminase compare
PS417_11435 -2.1 -7.1 asparagine synthase compare
PS417_23775 -2.1 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_15875 -2.1 -1.9 LuxR family transcriptional regulator compare
PS417_05535 -2.0 -1.8 Fis family transcriptional regulator compare
PS417_04385 -2.0 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_06680 -2.0 -5.7 nuclease PIN compare
PS417_11705 -2.0 -7.9 cyclic peptide transporter compare
PS417_17215 -1.8 -2.5 peptidylprolyl isomerase compare
PS417_27425 -1.7 -9.5 exopolyphosphatase compare
PS417_22450 -1.7 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_17645 -1.7 -1.9 RND transporter compare
PS417_00045 -1.6 -1.7 glycerol acyltransferase compare
PS417_03260 -1.6 -1.3 5S ribosomal RNA compare
PS417_02895 -1.6 -2.1 precorrin-6Y C5,15-methyltransferase compare
PS417_26420 -1.6 -1.8 hypothetical protein compare
PS417_03465 -1.6 -1.4 type III secretion protein compare
PS417_08090 -1.5 -0.7 3-oxoacyl-ACP reductase compare
PS417_07165 -1.5 -3.6 dihydrodipicolinate synthase compare
PS417_04390 -1.5 -2.1 toluene tolerance protein compare
PS417_10405 -1.5 -1.2 filamentous hemagglutinin compare
PS417_15915 -1.5 -1.1 hypothetical protein compare
PS417_02575 -1.5 -3.3 membrane protein compare
PS417_04380 -1.5 -0.9 ABC transporter permease compare
PS417_19690 -1.5 -4.6 histidine kinase compare
PS417_05815 -1.4 -3.2 recombinase RecA compare
PS417_10095 -1.4 -1.7 hypothetical protein compare
PS417_19655 -1.4 -3.0 chemotaxis protein CheW compare
PS417_13255 -1.3 -2.2 ABC transporter compare
PS417_27245 -1.3 -3.6 aminotransferase DegT compare
PS417_25645 -1.3 -4.3 peptidase M23 compare
PS417_01030 -1.3 -1.6 glutamine ABC transporter substrate-binding protein compare
PS417_22810 -1.3 -2.0 DNA base-flipping protein YbaZ compare
PS417_14985 -1.3 -2.3 Fe-S protein compare
PS417_07565 -1.2 -2.3 hypothetical protein compare
PS417_06745 -1.2 -1.4 polysaccharide deacetylase compare
PS417_13445 -1.2 -1.8 D-aminopeptidase compare
PS417_03560 -1.2 -1.1 GTP-binding protein compare
PS417_19605 -1.2 -0.7 hypothetical protein compare
PS417_22300 -1.2 -1.3 LTXXQ domain protein compare
PS417_08540 -1.2 -1.8 RNA helicase compare
PS417_19520 -1.2 -1.8 transcriptional regulator compare
PS417_23360 -1.2 -0.9 hypothetical protein compare
PS417_27290 -1.2 -1.5 hypothetical protein compare
PS417_19835 -1.1 -1.4 flagellar biosynthesis protein FliS compare
PS417_02880 -1.1 -1.0 copper chaperone compare
PS417_22895 -1.1 -4.4 tyrosine recombinase XerD compare
PS417_07410 -1.1 -1.9 hypothetical protein compare
PS417_19590 -1.1 -2.3 enoyl-CoA hydratase compare
PS417_25765 -1.1 -1.7 transcriptional regulator compare
PS417_00825 -1.1 -3.1 recombinase RecF compare
PS417_19665 -1.1 -3.0 flagellar motor protein MotD compare
PS417_21355 -1.1 -2.0 hypothetical protein compare
PS417_16555 -1.1 -1.1 cupin compare
PS417_12820 -1.1 -2.3 hypothetical protein compare
PS417_27875 -1.1 -4.8 histidine kinase compare
PS417_09420 -1.1 -1.5 LysR family transcriptional regulator compare
PS417_27770 -1.0 -3.2 hypothetical protein compare
PS417_03780 -1.0 -2.0 general secretion pathway protein GspH compare
PS417_24785 -1.0 -1.9 nucleoside-diphosphate sugar epimerase compare
PS417_08170 -1.0 -5.5 capsular biosynthesis protein compare
PS417_02485 -1.0 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00900 -1.0 -2.1 4-aminobutyrate aminotransferase compare
PS417_04985 -1.0 -2.4 ketosteroid isomerase compare
PS417_19660 -1.0 -3.1 cobalamin biosynthesis protein CobQ compare
PS417_18570 -1.0 -3.2 peptidoglycan-binding protein compare
PS417_18435 -1.0 -1.8 hypothetical protein compare
PS417_09085 -1.0 -1.0 hypothetical protein compare
PS417_22575 -1.0 -3.9 exonuclease I compare
PS417_05785 -1.0 -2.6 tail protein compare
PS417_02555 -1.0 -6.1 exoribonuclease R compare
PS417_17835 -1.0 -3.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_05595 -1.0 -5.3 ornithine carbamoyltransferase compare
PS417_21125 -1.0 -3.4 phosphoadenosine phosphosulfate reductase compare
PS417_28350 -1.0 -3.3 fatty acid methyltransferase compare
PS417_02370 -1.0 -1.3 ADP-ribose pyrophosphatase compare
PS417_21430 -1.0 -1.3 3-oxoacyl-ACP synthase compare
PS417_06490 -1.0 -3.1 hypothetical protein compare
PS417_20950 -1.0 -1.8 hypothetical protein compare
PS417_16490 -0.9 -1.1 cell division protein FtsK compare
PS417_27380 -0.9 -1.2 GntR family transcriptional regulator compare
PS417_22445 -0.9 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_16080 -0.9 -1.5 AraC family transcriptional regulator compare
PS417_26145 -0.9 -1.2 hypothetical protein compare
PS417_02695 -0.9 -1.1 protein hupE compare
PS417_08220 -0.9 -0.8 epimerase compare
PS417_26730 -0.9 -0.4 pyrroline-5-carboxylate reductase compare
PS417_24835 -0.9 -3.6 hypothetical protein compare
PS417_21565 -0.9 -3.0 flagellar basal body rod protein FlgC compare
PS417_28145 -0.9 -2.2 AraC family transcriptional regulator compare
PS417_24355 -0.9 -1.1 MFS transporter compare
PS417_27315 -0.9 -1.0 hypothetical protein compare
PS417_21625 -0.9 -0.8 DNA-binding protein compare
PS417_20985 -0.9 -0.6 porin compare
PS417_15035 -0.9 -1.1 alkylhydroperoxidase compare
PS417_05710 -0.9 -1.6 hypothetical protein compare
PS417_15495 -0.9 -3.1 FAD-dependent oxidoreductase compare
PS417_21955 -0.9 -1.8 dehydrogenase compare
PS417_16195 -0.9 -0.8 AraC family transcriptional regulator compare
PS417_16720 -0.9 -0.8 membrane protein compare
PS417_04800 -0.9 -1.3 alginate O-acetyltransferase compare
PS417_12310 -0.9 -4.2 methionine synthase compare
PS417_15135 -0.9 -1.0 hypothetical protein compare
PS417_06500 -0.9 -1.0 hypothetical protein compare
PS417_27595 -0.9 -1.2 recombinase XerC compare
PS417_07700 -0.8 -1.4 chromosome partitioning protein ParA compare
PS417_25390 -0.8 -2.2 MFS transporter compare
PS417_02885 -0.8 -1.7 hypothetical protein compare
PS417_12935 -0.8 -1.2 RNA polymerase sigma factor compare
PS417_19675 -0.8 -2.3 chemotaxis protein CheY compare
PS417_04875 -0.8 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_14245 -0.8 -1.1 hypothetical protein compare
PS417_15805 -0.8 -1.1 transporter compare
PS417_14655 -0.8 -0.8 lysine transporter LysE compare
PS417_02070 -0.8 -0.7 membrane protein compare
PS417_05445 -0.8 -0.9 DNA mismatch repair protein MutT compare
PS417_27640 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_20040 -0.8 -2.9 cobyric acid synthase compare
PS417_19755 -0.8 -1.1 flagellar motor switch protein FliM compare
PS417_23995 -0.8 -0.5 preprotein translocase subunit SecG compare
PS417_05005 -0.8 -3.8 penicillin-binding protein compare
PS417_22330 -0.8 -2.3 arginine deiminase compare
PS417_27075 -0.8 -1.4 thiol-disulfide isomerase compare
PS417_19650 -0.8 -1.4 chemotaxis protein CheW compare
PS417_18445 -0.8 -2.3 glycerol-3-phosphatase compare
PS417_01590 -0.8 -1.4 polysaccharide deacetylase compare
PS417_04270 -0.8 -4.1 ribonuclease G compare
PS417_23095 -0.8 -0.7 exodeoxyribonuclease compare
PS417_15200 -0.8 -1.7 protein activator of alkane oxidation PraB compare
PS417_11945 -0.8 -1.5 hypothetical protein compare
PS417_01750 -0.8 -1.2 histidine ammonia-lyase compare
PS417_19760 -0.8 -2.5 flagellar basal body protein FliL compare
PS417_26645 -0.8 -1.4 chemotaxis protein compare
PS417_04025 -0.8 -2.6 glycine/betaine ABC transporter permease compare
PS417_21575 -0.8 -3.2 chemotaxis protein compare
PS417_27865 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_14805 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_21595 -0.8 -1.7 flagellar biosynthesis protein FlgN compare
PS417_08230 -0.8 -1.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23825 -0.8 -3.3 penicillin-binding protein compare
PS417_19685 -0.8 -2.9 protein phosphatase compare
PS417_13245 -0.8 -2.3 saccharopine dehydrogenase compare
PS417_28030 -0.8 -2.2 hypothetical protein compare
PS417_28515 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_12375 -0.8 -1.3 serine/threonine protein phosphatase compare
PS417_08050 -0.8 -1.9 amino acid amidase compare
PS417_18070 -0.8 -0.7 general secretion pathway protein GspH compare
PS417_21850 -0.8 -0.8 LysR family transcriptional regulator compare
PS417_14065 -0.8 -3.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13065 -0.7 -1.9 UDP pyrophosphate phosphatase compare
PS417_23460 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_04365 -0.7 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20570 -0.7 -2.5 3-oxoacyl-ACP synthase compare
PS417_25780 -0.7 -1.7 molecular chaperone DnaJ compare
PS417_14515 -0.7 -0.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_08365 -0.7 -0.6 hypothetical protein compare
PS417_17900 -0.7 -2.6 transcriptional regulator compare
PS417_16715 -0.7 -0.6 DoxX family protein compare
PS417_05475 -0.7 -2.5 arginase compare
PS417_24125 -0.7 -2.3 hypothetical protein compare
PS417_27910 -0.7 -2.1 PppA compare
PS417_01955 -0.7 -3.8 peptidase compare
PS417_02775 -0.7 -2.5 heat-shock protein compare
PS417_26225 -0.7 -1.7 electron transfer flavoprotein subunit beta compare
PS417_08580 -0.7 -2.5 histidine kinase compare
PS417_27335 -0.7 -4.6 flagellar basal body protein FliL compare
PS417_14260 -0.7 -1.6 phosphate ABC transporter permease compare
PS417_13830 -0.7 -2.5 hypothetical protein compare
PS417_17125 -0.7 -1.1 transcriptional regulator compare
PS417_15125 -0.7 -1.2 glutathione S-transferase compare
PS417_01620 -0.7 -0.9 preprotein translocase subunit SecB compare
PS417_07710 -0.7 -2.2 membrane protein compare
PS417_11510 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_11770 -0.7 -1.1 pyruvate dehydrogenase compare
PS417_01850 -0.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19350 -0.7 -2.0 GTP cyclohydrolase compare
PS417_17445 -0.7 -1.5 sulfur oxidation protein SoxZ compare
PS417_00650 -0.7 -0.4 LysR family transcriptional regulator compare
PS417_16510 -0.7 -2.1 Clp protease ClpX compare
PS417_08685 -0.7 -0.9 flagellar hook-length control protein FliK compare
PS417_21395 -0.7 -4.5 radical SAM protein compare
PS417_19840 -0.7 -4.0 flagellar cap protein FliD compare
PS417_10185 -0.7 -1.9 hypothetical protein compare
PS417_26655 -0.7 -2.1 chemotaxis protein compare
PS417_26650 -0.7 -3.6 histidine kinase compare
PS417_20800 -0.7 -2.2 recombination protein RecR compare
PS417_21480 -0.7 -0.8 23S rRNA pseudouridylate synthase compare
PS417_05635 -0.7 -2.9 membrane protein compare
PS417_00345 -0.7 -0.9 copper-binding protein compare
PS417_22815 -0.7 -2.7 permease compare


Specific Phenotypes

For 6 genes in this experiment