Experiment set18IT052 for Pseudomonas simiae WCS417
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Group: agar plate interactionMedia: LB
Culturing: fluoroDangl_ML3, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 17-Aug-21
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 6 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Bacterial Cell Division | 1 |
| Cyanophycin Metabolism | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
| Queuosine-Archaeosine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine biosynthesis I | 1 | 1 | 1 |
| L-glutamine degradation I | 1 | 1 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| superpathway of L-asparagine biosynthesis | 2 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 4 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 8 | 1 |
| superpathway of L-citrulline metabolism | 12 | 10 | 1 |