Experiment set18IT051 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_16555 -4.1 -2.4 cupin compare
PS417_22565 -3.6 -1.1 formyltetrahydrofolate deformylase compare
PS417_27795 -3.4 -1.0 orotate phosphoribosyltransferase compare
PS417_26370 -3.0 -4.4 RNA helicase compare
PS417_03560 -3.0 -1.8 GTP-binding protein compare
PS417_08125 -2.9 -0.9 prephenate dehydratase compare
PS417_06680 -2.8 -7.3 nuclease PIN compare
PS417_03455 -2.4 -1.9 type III secretion protein compare
PS417_27870 -2.2 -3.8 ATP-dependent DNA helicase RecG compare
PS417_22570 -2.0 -1.1 H-NS histone compare
PS417_27245 -2.0 -4.5 aminotransferase DegT compare
PS417_21125 -1.9 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_26420 -1.9 -1.6 hypothetical protein compare
PS417_11430 -1.9 -7.0 EamA compare
PS417_27865 -1.8 -2.1 LysR family transcriptional regulator compare
PS417_04380 -1.8 -0.9 ABC transporter permease compare
PS417_12355 -1.7 -2.1 magnesium chelatase compare
PS417_15885 -1.7 -1.4 GCN5 family acetyltransferase compare
PS417_04650 -1.7 -0.7 D-alanine--D-alanine ligase compare
PS417_20785 -1.7 -3.0 transcriptional regulator compare
PS417_11705 -1.7 -5.0 cyclic peptide transporter compare
PS417_27425 -1.7 -7.1 exopolyphosphatase compare
PS417_06375 -1.6 -0.9 deoxycytidine triphosphate deaminase compare
PS417_19955 -1.6 -1.3 hypothetical protein compare
PS417_24835 -1.6 -3.6 hypothetical protein compare
PS417_03260 -1.5 -1.3 5S ribosomal RNA compare
PS417_19885 -1.5 -3.0 flagellar basal body rod protein FlgG compare
PS417_02280 -1.5 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_24500 -1.5 -3.4 DEAD/DEAH box helicase compare
PS417_24615 -1.5 -1.2 hypothetical protein compare
PS417_08170 -1.5 -7.4 capsular biosynthesis protein compare
PS417_26685 -1.5 -2.0 hypothetical protein compare
PS417_20725 -1.4 -1.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_04585 -1.4 -1.4 hypothetical protein compare
PS417_02895 -1.4 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_17240 -1.4 -2.3 trigger factor compare
PS417_19655 -1.4 -4.3 chemotaxis protein CheW compare
PS417_02575 -1.4 -3.4 membrane protein compare
PS417_02270 -1.4 -4.5 carbamoyltransferase compare
PS417_26770 -1.4 -2.3 tRNA (guanine-N7)-methyltransferase compare
PS417_24745 -1.4 -2.7 gamma-glutamyl phosphate reductase compare
PS417_05160 -1.4 -0.9 DNA polymerase III subunit chi compare
PS417_21430 -1.4 -1.4 3-oxoacyl-ACP synthase compare
PS417_13140 -1.4 -1.7 oxidoreductase compare
PS417_01605 -1.4 -0.8 phosphoglycerate mutase compare
PS417_04390 -1.3 -3.2 toluene tolerance protein compare
PS417_19350 -1.3 -2.8 GTP cyclohydrolase compare
PS417_09235 -1.3 -0.9 molecular chaperone compare
PS417_07620 -1.3 -1.4 beta-hexosaminidase compare
PS417_07870 -1.3 -2.1 hypothetical protein compare
PS417_23775 -1.3 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_01920 -1.3 -0.7 ATP-dependent protease subunit HslV compare
PS417_16855 -1.3 -1.7 cation:proton antiporter compare
PS417_26175 -1.3 -1.0 sarcosine oxidase subunit gamma compare
PS417_16520 -1.2 -1.8 cold-shock protein compare
PS417_20985 -1.2 -0.8 porin compare
PS417_18095 -1.2 -1.7 iron-dicitrate transporter subunit FecD compare
PS417_08540 -1.2 -1.8 RNA helicase compare
PS417_18425 -1.2 -1.3 sporulation protein compare
PS417_10985 -1.2 -0.9 NADH:flavin oxidoreductase compare
PS417_05815 -1.2 -2.7 recombinase RecA compare
PS417_04290 -1.2 -2.7 hypothetical protein compare
PS417_02555 -1.2 -7.5 exoribonuclease R compare
PS417_02370 -1.1 -1.5 ADP-ribose pyrophosphatase compare
PS417_22300 -1.1 -1.3 LTXXQ domain protein compare
PS417_06370 -1.1 -1.2 cold-shock protein compare
PS417_19690 -1.1 -3.4 histidine kinase compare
PS417_18570 -1.1 -3.2 peptidoglycan-binding protein compare
PS417_19335 -1.1 -1.8 isochorismatase compare
PS417_26730 -1.1 -0.4 pyrroline-5-carboxylate reductase compare
PS417_24370 -1.1 -0.7 (2Fe-2S)-binding protein compare
PS417_18070 -1.1 -0.9 general secretion pathway protein GspH compare
PS417_23545 -1.1 -1.1 gamma-glutamyl kinase compare
PS417_25315 -1.1 -3.3 membrane protein compare
PS417_04010 -1.1 -4.6 glycine/betaine ABC transporter ATP-binding protein compare
PS417_27595 -1.1 -1.9 recombinase XerC compare
PS417_09330 -1.1 -2.5 NAD(P)H-quinone oxidoreductase compare
PS417_02740 -1.1 -1.8 LysR family transcriptional regulator compare
PS417_08090 -1.1 -0.6 3-oxoacyl-ACP reductase compare
PS417_01510 -1.0 -1.1 hypothetical protein compare
PS417_06730 -1.0 -1.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_20775 -1.0 -2.6 coproporphyrinogen III oxidase compare
PS417_22445 -1.0 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_15540 -1.0 -1.1 NUDIX hydrolase compare
PS417_01965 -1.0 -1.3 fimbriae biosynthesis protein compare
PS417_17835 -1.0 -2.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_04500 -1.0 -1.2 hypothetical protein compare
PS417_19790 -1.0 -2.0 ATP synthase compare
PS417_18105 -1.0 -1.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_08580 -1.0 -3.1 histidine kinase compare
PS417_23915 -1.0 -2.2 pantoate--beta-alanine ligase compare
PS417_11435 -1.0 -3.8 asparagine synthase compare
PS417_00385 -1.0 -0.8 Fur family transcriptional regulator compare
PS417_03475 -1.0 -1.5 type III secretion protein compare
PS417_11440 -1.0 -0.7 hypothetical protein compare
PS417_27135 -1.0 -0.5 glutamine synthetase compare
PS417_02885 -1.0 -1.4 hypothetical protein compare
PS417_01580 -1.0 -1.1 imidazole glycerol phosphate synthase compare
PS417_19660 -1.0 -6.0 cobalamin biosynthesis protein CobQ compare
PS417_17945 -0.9 -0.7 hypothetical protein compare
PS417_03525 -0.9 -1.1 hypothetical protein compare
PS417_27075 -0.9 -1.8 thiol-disulfide isomerase compare
PS417_19860 -0.9 -6.4 flagellar hook protein FlgL compare
PS417_22945 -0.9 -1.5 phosphoribosylglycinamide formyltransferase compare
PS417_22450 -0.9 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_19650 -0.9 -2.6 chemotaxis protein CheW compare
PS417_10480 -0.9 -1.6 glutathione S-transferase compare
PS417_06600 -0.9 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_21760 -0.9 -1.3 hypothetical protein compare
PS417_07165 -0.9 -4.5 dihydrodipicolinate synthase compare
PS417_15650 -0.9 -1.2 glutamine amidotransferase compare
PS417_10025 -0.9 -0.8 bacteriophage lambda NinG family protein compare
PS417_13855 -0.9 -0.9 acetyl-CoA acetyltransferase compare
PS417_13590 -0.9 -2.2 histidine kinase compare
PS417_17830 -0.9 -2.2 4-hydroxyphenylacetate isomerase compare
PS417_13255 -0.9 -1.6 ABC transporter compare
PS417_03385 -0.9 -1.0 flavin reductase compare
PS417_21595 -0.9 -3.2 flagellar biosynthesis protein FlgN compare
PS417_19685 -0.9 -4.4 protein phosphatase compare
PS417_03465 -0.9 -1.2 type III secretion protein compare
PS417_18395 -0.9 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_15285 -0.9 -0.7 type VI secretion protein compare
PS417_04025 -0.9 -2.4 glycine/betaine ABC transporter permease compare
PS417_16195 -0.9 -0.8 AraC family transcriptional regulator compare
PS417_07640 -0.9 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25815 -0.9 -1.8 magnesium transporter ApaG compare
PS417_07565 -0.9 -1.3 hypothetical protein compare
PS417_02915 -0.9 -1.9 precorrin-3B C17-methyltransferase compare
PS417_25280 -0.8 -1.8 methyltransferase compare
PS417_02160 -0.8 -0.8 hypothetical protein compare
PS417_08410 -0.8 -1.0 hypothetical protein compare
PS417_11390 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_10955 -0.8 -1.6 porin compare
PS417_00195 -0.8 -1.5 hypothetical protein compare
PS417_17000 -0.8 -2.0 MerR family transcriptional regulator compare
PS417_27085 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_19880 -0.8 -3.0 flagellar basal body L-ring protein compare
PS417_27110 -0.8 -2.4 spermidine/putrescine ABC transporter permease compare
PS417_26155 -0.8 -1.5 hypothetical protein compare
PS417_15875 -0.8 -0.9 LuxR family transcriptional regulator compare
PS417_23825 -0.8 -2.9 penicillin-binding protein compare
PS417_19675 -0.8 -2.8 chemotaxis protein CheY compare
PS417_21565 -0.8 -2.2 flagellar basal body rod protein FlgC compare
PS417_10040 -0.8 -0.6 MFS transporter compare
PS417_02485 -0.8 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02805 -0.8 -1.1 urease subunit gamma compare
PS417_17070 -0.8 -1.6 RNA polymerase subunit sigma-24 compare
PS417_06780 -0.8 -2.0 TetR family transcriptional regulator compare
PS417_01405 -0.8 -1.7 sugar transporter compare
PS417_16715 -0.8 -0.8 DoxX family protein compare
PS417_19760 -0.8 -2.6 flagellar basal body protein FliL compare
PS417_19720 -0.8 -0.8 DNA-binding protein compare
PS417_27315 -0.8 -0.8 hypothetical protein compare
PS417_06205 -0.8 -4.2 methionine aminopeptidase compare
PS417_19615 -0.8 -2.9 chemotaxis protein CheW compare
PS417_05255 -0.7 -3.4 hypothetical protein compare
PS417_27745 -0.7 -2.2 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_20650 -0.7 -3.6 hypothetical protein compare
PS417_26990 -0.7 -0.5 RNA pyrophosphohydrolase compare
PS417_20185 -0.7 -1.5 ketosteroid isomerase compare
PS417_17645 -0.7 -1.0 RND transporter compare
PS417_08770 -0.7 -1.6 hypothetical protein compare
PS417_11200 -0.7 -2.3 membrane protein compare
PS417_01955 -0.7 -3.1 peptidase compare
PS417_00045 -0.7 -1.0 glycerol acyltransferase compare
PS417_05200 -0.7 -1.7 DNA recombination protein RecO compare
PS417_25790 -0.7 -3.2 aminoglycoside phosphotransferase compare
PS417_00390 -0.7 -2.6 ABC transporter substrate-binding protein compare
PS417_20715 -0.7 -1.0 cytochrome Cbb3 compare
PS417_19840 -0.7 -3.7 flagellar cap protein FliD compare
PS417_20340 -0.7 -0.9 hypothetical protein compare
PS417_10385 -0.7 -2.0 peroxiredoxin compare
PS417_27040 -0.7 -0.8 3-phosphoglycerate dehydrogenase compare
PS417_25225 -0.7 -0.8 MFS transporter compare
PS417_06735 -0.7 -1.2 3-oxoadipate enol-lactonase compare
PS417_11015 -0.7 -1.5 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_17805 -0.7 -1.1 microcin B17 processing protein McbC compare
PS417_15200 -0.7 -1.6 protein activator of alkane oxidation PraB compare
PS417_09475 -0.7 -2.2 class V aminotransferase compare
PS417_02990 -0.7 -1.2 hypothetical protein compare
PS417_01850 -0.7 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16020 -0.7 -2.1 LysR family transcriptional regulator compare
PS417_05635 -0.7 -3.0 membrane protein compare
PS417_02070 -0.7 -0.6 membrane protein compare
PS417_02225 -0.7 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27055 -0.7 -1.5 hypothetical protein compare
PS417_07120 -0.7 -2.7 RNA polymerase sigma-H factor compare
PS417_16640 -0.7 -1.8 toxin compare
PS417_18600 -0.7 -1.4 isopropylmalate isomerase compare
PS417_17630 -0.7 -1.5 RNA polymerase sigma factor compare
PS417_19785 -0.7 -1.9 flagellar biogenesis protein compare
PS417_12565 -0.7 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_21480 -0.7 -0.8 23S rRNA pseudouridylate synthase compare
PS417_27335 -0.7 -3.9 flagellar basal body protein FliL compare
PS417_22375 -0.7 -0.5 cold-shock protein compare
PS417_09755 -0.7 -2.4 hypothetical protein compare
PS417_05590 -0.7 -3.0 iron ABC transporter ATP-binding protein compare
PS417_06530 -0.7 -1.3 membrane protein compare
PS417_02800 -0.7 -1.0 acetyltransferase compare
PS417_19795 -0.7 -4.0 flagellar assembly protein FliH compare


Specific Phenotypes

For 5 genes in this experiment