Experiment set18IT050 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_06375 -3.8 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27795 -3.3 -0.9 orotate phosphoribosyltransferase compare
PS417_00755 -3.2 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_16555 -2.9 -2.3 cupin compare
PS417_09470 -2.9 -1.2 hypothetical protein compare
PS417_25710 -2.8 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_08125 -2.7 -0.8 prephenate dehydratase compare
PS417_21430 -2.6 -2.2 3-oxoacyl-ACP synthase compare
PS417_24370 -2.5 -1.0 (2Fe-2S)-binding protein compare
PS417_08540 -2.5 -2.3 RNA helicase compare
PS417_19955 -2.4 -1.8 hypothetical protein compare
PS417_26370 -2.3 -4.1 RNA helicase compare
PS417_04390 -2.3 -3.2 toluene tolerance protein compare
PS417_06680 -2.3 -6.8 nuclease PIN compare
PS417_04365 -2.3 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08220 -2.3 -1.1 epimerase compare
PS417_00510 -2.3 -1.3 membrane protein compare
PS417_23775 -2.2 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_11430 -2.2 -6.6 EamA compare
PS417_11705 -2.0 -7.6 cyclic peptide transporter compare
PS417_28515 -2.0 -3.5 16S rRNA methyltransferase compare
PS417_02560 -2.0 -1.9 23S rRNA methyltransferase compare
PS417_22570 -1.9 -0.9 H-NS histone compare
PS417_06370 -1.9 -1.5 cold-shock protein compare
PS417_24745 -1.8 -3.2 gamma-glutamyl phosphate reductase compare
PS417_00175 -1.8 -1.0 CigR compare
PS417_04500 -1.8 -1.5 hypothetical protein compare
PS417_02485 -1.7 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27290 -1.6 -1.5 hypothetical protein compare
PS417_27870 -1.6 -2.5 ATP-dependent DNA helicase RecG compare
PS417_03260 -1.5 -0.6 5S ribosomal RNA compare
PS417_15480 -1.5 -1.6 ABC transporter substrate-binding protein compare
PS417_04380 -1.5 -0.7 ABC transporter permease compare
PS417_02865 -1.5 -3.1 peptidase compare
PS417_04050 -1.5 -1.9 peptide ABC transporter ATP-binding protein compare
PS417_19720 -1.5 -1.6 DNA-binding protein compare
PS417_11925 -1.5 -1.7 hypothetical protein compare
PS417_08545 -1.4 -1.5 aromatic ring-opening dioxygenase LigB compare
PS417_27245 -1.4 -3.6 aminotransferase DegT compare
PS417_04375 -1.3 -1.3 ABC transporter ATP-binding protein compare
PS417_07170 -1.3 -3.2 hypothetical protein compare
PS417_13075 -1.3 -1.3 hypothetical protein compare
PS417_03560 -1.3 -1.1 GTP-binding protein compare
PS417_22840 -1.3 -1.6 tRNA-Met compare
PS417_19690 -1.2 -3.4 histidine kinase compare
PS417_00975 -1.2 -1.2 hypothetical protein compare
PS417_16715 -1.2 -1.2 DoxX family protein compare
PS417_22450 -1.2 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_19685 -1.2 -4.4 protein phosphatase compare
PS417_19675 -1.2 -4.0 chemotaxis protein CheY compare
PS417_11615 -1.2 -1.3 urea ABC transporter ATP-binding protein compare
PS417_08365 -1.2 -0.8 hypothetical protein compare
PS417_05025 -1.2 -1.3 maleylacetoacetate isomerase compare
PS417_19665 -1.2 -2.4 flagellar motor protein MotD compare
PS417_20785 -1.2 -1.6 transcriptional regulator compare
PS417_06730 -1.2 -1.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_22565 -1.2 -0.6 formyltetrahydrofolate deformylase compare
PS417_21125 -1.2 -3.5 phosphoadenosine phosphosulfate reductase compare
PS417_02870 -1.2 -5.6 TonB-dependent receptor compare
PS417_23095 -1.1 -0.8 exodeoxyribonuclease compare
PS417_07710 -1.1 -3.2 membrane protein compare
PS417_02950 -1.1 -2.3 tRNA-dihydrouridine synthase B compare
PS417_18435 -1.1 -2.1 hypothetical protein compare
PS417_27195 -1.1 -0.9 N-acetylglutamate synthase compare
PS417_24500 -1.1 -1.7 DEAD/DEAH box helicase compare
PS417_13140 -1.1 -1.1 oxidoreductase compare
PS417_13165 -1.1 -2.0 peroxidase compare
PS417_14940 -1.1 -1.3 LysR family transcriptional regulator compare
PS417_23825 -1.1 -5.1 penicillin-binding protein compare
PS417_16750 -1.1 -1.9 ABC transporter ATP-binding protein compare
PS417_28010 -1.1 -2.4 pyridine nucleotide-disulfide oxidoreductase compare
PS417_24615 -1.1 -0.9 hypothetical protein compare
PS417_00535 -1.1 -1.4 Holliday junction resolvase compare
PS417_12110 -1.1 -1.3 ATP-binding protein compare
PS417_11485 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_13055 -1.1 -1.6 aminotransferase compare
PS417_16720 -1.1 -0.8 membrane protein compare
PS417_01290 -1.1 -1.0 ADP-ribose diphosphatase compare
PS417_06635 -1.0 -0.8 ferredoxin compare
PS417_26275 -1.0 -1.8 glycine/betaine ABC transporter substrate-binding protein compare
PS417_02885 -1.0 -1.8 hypothetical protein compare
PS417_02880 -1.0 -0.7 copper chaperone compare
PS417_22050 -1.0 -2.8 ribonuclease BN compare
PS417_25310 -1.0 -2.1 hypothetical protein compare
PS417_20725 -1.0 -1.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_11435 -1.0 -2.9 asparagine synthase compare
PS417_11345 -1.0 -2.4 membrane protein compare
PS417_11360 -1.0 -2.2 energy transducer TonB compare
PS417_28390 -1.0 -3.2 CDP-alcohol phosphatidyltransferase compare
PS417_27535 -1.0 -4.8 chemotaxis protein CheY compare
PS417_19335 -1.0 -2.0 isochorismatase compare
PS417_19655 -1.0 -3.0 chemotaxis protein CheW compare
PS417_26730 -0.9 -0.4 pyrroline-5-carboxylate reductase compare
PS417_22950 -0.9 -1.6 preQ0 transporter compare
PS417_22575 -0.9 -3.4 exonuclease I compare
PS417_10405 -0.9 -0.8 filamentous hemagglutinin compare
PS417_00455 -0.9 -1.2 hypothetical protein compare
PS417_08410 -0.9 -1.7 hypothetical protein compare
PS417_04220 -0.9 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_27875 -0.9 -3.8 histidine kinase compare
PS417_27425 -0.9 -2.6 exopolyphosphatase compare
PS417_11810 -0.9 -1.5 oxidoreductase compare
PS417_10305 -0.9 -1.2 hypothetical protein compare
PS417_25390 -0.9 -1.8 MFS transporter compare
PS417_27515 -0.9 -2.4 heme biosynthesis protein HemY compare
PS417_04290 -0.9 -2.6 hypothetical protein compare
PS417_23545 -0.9 -0.8 gamma-glutamyl kinase compare
PS417_22445 -0.9 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_14125 -0.9 -2.2 molybdenum ABC transporter ATP-binding protein compare
PS417_19515 -0.8 -2.0 histidine kinase compare
PS417_02435 -0.8 -2.8 flagellar motor protein MotA compare
PS417_00045 -0.8 -1.0 glycerol acyltransferase compare
PS417_26650 -0.8 -5.1 histidine kinase compare
PS417_22115 -0.8 -1.8 transcriptional regulator compare
PS417_23315 -0.8 -0.8 transcriptional regulator compare
PS417_22520 -0.8 -0.9 histidine kinase compare
PS417_25315 -0.8 -2.6 membrane protein compare
PS417_17000 -0.8 -1.4 MerR family transcriptional regulator compare
PS417_28200 -0.8 -1.9 hypothetical protein compare
PS417_02745 -0.8 -1.3 FMN-dependent NADH-azoreductase compare
PS417_08170 -0.8 -4.6 capsular biosynthesis protein compare
PS417_06500 -0.8 -0.9 hypothetical protein compare
PS417_00550 -0.8 -0.6 hypothetical protein compare
PS417_14065 -0.8 -3.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02165 -0.8 -1.9 ZapA compare
PS417_20635 -0.8 -0.5 ABC transporter ATP-binding protein compare
PS417_02270 -0.8 -2.2 carbamoyltransferase compare
PS417_19350 -0.8 -2.6 GTP cyclohydrolase compare
PS417_22175 -0.8 -0.9 amino acid transporter LysE compare
PS417_27800 -0.8 -0.9 exodeoxyribonuclease III compare
PS417_14315 -0.8 -1.5 2,5-dioxovalerate dehydrogenase compare
PS417_27690 -0.8 -1.7 XRE family transcriptional regulator compare
PS417_21070 -0.8 -1.5 aconitate hydratase compare
PS417_17560 -0.8 -2.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_08620 -0.8 -0.6 hypothetical protein compare
PS417_06355 -0.8 -1.5 protein-L-isoaspartate O-methyltransferase compare
PS417_26175 -0.8 -0.6 sarcosine oxidase subunit gamma compare
PS417_12535 -0.8 -1.4 nitrilase compare
PS417_01405 -0.8 -1.6 sugar transporter compare
PS417_02990 -0.8 -1.8 hypothetical protein compare
PS417_27075 -0.8 -1.6 thiol-disulfide isomerase compare
PS417_17190 -0.8 -2.4 MarR family transcriptional regulator compare
PS417_01435 -0.8 -0.7 hypothetical protein compare
PS417_01920 -0.7 -0.5 ATP-dependent protease subunit HslV compare
PS417_26335 -0.7 -1.2 BetI family transcriptional regulator compare
PS417_13955 -0.7 -3.7 protein QbdB compare
PS417_17755 -0.7 -1.3 hypothetical protein compare
PS417_22945 -0.7 -1.2 phosphoribosylglycinamide formyltransferase compare
PS417_12325 -0.7 -1.6 precorrin-4 C11-methyltransferase compare
PS417_21420 -0.7 -5.5 aminodeoxychorismate lyase compare
PS417_26465 -0.7 -1.3 hypothetical protein compare
PS417_02045 -0.7 -2.0 3-oxoacyl-ACP synthase compare
PS417_10060 -0.7 -1.2 hypothetical protein compare
PS417_05695 -0.7 -2.4 transcriptional regulator compare
PS417_26645 -0.7 -1.0 chemotaxis protein compare
PS417_09450 -0.7 -3.0 Fis family transcriptional regulator compare
PS417_02575 -0.7 -1.9 membrane protein compare
PS417_04385 -0.7 -1.3 organic solvent ABC transporter substrate-binding protein compare
PS417_25915 -0.7 -1.1 carbon-nitrogen hydrolase compare
PS417_02955 -0.7 -1.9 hypothetical protein compare
PS417_20130 -0.7 -3.9 dehydrogenase compare
PS417_17545 -0.7 -1.6 2-oxoisovalerate dehydrogenase compare
PS417_16185 -0.7 -1.8 hypothetical protein compare
PS417_08770 -0.7 -1.9 hypothetical protein compare
PS417_27990 -0.7 -1.9 hypothetical protein compare
PS417_15770 -0.7 -0.7 pyridoxine 5'-phosphate oxidase compare
PS417_04025 -0.7 -2.8 glycine/betaine ABC transporter permease compare
PS417_02765 -0.7 -0.8 phosphate starvation-inducible protein PsiF compare
PS417_09445 -0.7 -1.8 antibiotic biosynthesis monooxygenase compare
PS417_18105 -0.7 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_20915 -0.7 -2.0 hypothetical protein compare
PS417_12840 -0.7 -1.7 TetR family transcriptional regulator compare
PS417_23615 -0.7 -1.3 sulfate transporter compare
PS417_23105 -0.7 -0.9 hypothetical protein compare
PS417_12870 -0.7 -0.8 enoyl-CoA hydratase compare
PS417_22735 -0.7 -3.2 thiol oxidoreductase compare
PS417_25985 -0.7 -0.9 dethiobiotin synthetase compare
PS417_27770 -0.7 -1.5 hypothetical protein compare
PS417_15005 -0.7 -1.3 hypothetical protein compare
PS417_09065 -0.7 -2.7 short-chain dehydrogenase compare
PS417_20775 -0.7 -1.7 coproporphyrinogen III oxidase compare
PS417_11045 -0.7 -3.0 3-oxoacyl-ACP reductase compare
PS417_18185 -0.7 -3.2 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_07400 -0.7 -1.0 hypothetical protein compare
PS417_26655 -0.7 -1.6 chemotaxis protein compare
PS417_16735 -0.7 -1.7 aldehyde dehydrogenase compare
PS417_13250 -0.7 -1.9 ABC transporter compare
PS417_06865 -0.7 -1.2 transporter compare
PS417_08045 -0.7 -0.9 uracil permease compare
PS417_28225 -0.7 -0.7 hypothetical protein compare
PS417_12375 -0.7 -1.0 serine/threonine protein phosphatase compare
PS417_18150 -0.7 -1.7 chemotaxis protein CheY compare
PS417_15745 -0.7 -0.8 lipid carrier protein compare
PS417_10210 -0.7 -2.2 hypothetical protein compare
PS417_12855 -0.7 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17305 -0.6 -0.8 hypothetical protein compare
PS417_19190 -0.6 -1.4 BolA family transcriptional regulator compare
PS417_01995 -0.6 -1.0 hypothetical protein compare
PS417_09920 -0.6 -2.2 hypothetical protein compare
PS417_15365 -0.6 -1.2 diaminopimelate epimerase compare


Specific Phenotypes

For 6 genes in this experiment