Experiment set18IT049 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.5 -1.1 formyltetrahydrofolate deformylase compare
PS417_27795 -3.4 -1.1 orotate phosphoribosyltransferase compare
PS417_27135 -3.3 -1.0 glutamine synthetase compare
PS417_22990 -3.1 -1.9 iron dicitrate transport regulator FecR compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_19955 -2.8 -1.8 hypothetical protein compare
PS417_23775 -2.4 -2.3 exodeoxyribonuclease V subunit beta compare
PS417_06375 -2.4 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27245 -2.4 -5.5 aminotransferase DegT compare
PS417_24745 -2.3 -3.2 gamma-glutamyl phosphate reductase compare
PS417_27870 -2.3 -3.2 ATP-dependent DNA helicase RecG compare
PS417_06680 -2.3 -6.5 nuclease PIN compare
PS417_26370 -2.3 -3.7 RNA helicase compare
PS417_08620 -2.2 -1.4 hypothetical protein compare
PS417_13075 -2.2 -2.1 hypothetical protein compare
PS417_11430 -2.1 -4.8 EamA compare
PS417_08220 -1.9 -1.2 epimerase compare
PS417_11705 -1.8 -6.6 cyclic peptide transporter compare
PS417_21480 -1.8 -1.6 23S rRNA pseudouridylate synthase compare
PS417_11485 -1.8 -1.8 AraC family transcriptional regulator compare
PS417_04390 -1.8 -4.1 toluene tolerance protein compare
PS417_21430 -1.8 -2.2 3-oxoacyl-ACP synthase compare
PS417_27425 -1.8 -9.2 exopolyphosphatase compare
PS417_00180 -1.7 -2.8 tryptophan synthase subunit alpha compare
PS417_02280 -1.6 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_07170 -1.6 -4.0 hypothetical protein compare
PS417_04440 -1.6 -2.7 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27195 -1.6 -1.5 N-acetylglutamate synthase compare
PS417_23545 -1.6 -1.7 gamma-glutamyl kinase compare
PS417_27290 -1.5 -1.9 hypothetical protein compare
PS417_07710 -1.5 -4.2 membrane protein compare
PS417_02560 -1.5 -1.8 23S rRNA methyltransferase compare
PS417_03260 -1.5 -0.9 5S ribosomal RNA compare
PS417_02720 -1.5 -0.9 TetR family transcriptional regulator compare
PS417_01620 -1.5 -2.5 preprotein translocase subunit SecB compare
PS417_15770 -1.4 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_21125 -1.4 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_20785 -1.4 -2.5 transcriptional regulator compare
PS417_02575 -1.4 -3.4 membrane protein compare
PS417_08135 -1.4 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01605 -1.4 -0.8 phosphoglycerate mutase compare
PS417_19690 -1.4 -4.7 histidine kinase compare
PS417_27800 -1.3 -0.9 exodeoxyribonuclease III compare
PS417_25710 -1.3 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_19650 -1.3 -4.0 chemotaxis protein CheW compare
PS417_27075 -1.3 -2.8 thiol-disulfide isomerase compare
PS417_12325 -1.3 -2.7 precorrin-4 C11-methyltransferase compare
PS417_07565 -1.3 -2.4 hypothetical protein compare
PS417_07620 -1.3 -1.9 beta-hexosaminidase compare
PS417_22575 -1.3 -5.8 exonuclease I compare
PS417_08050 -1.2 -3.5 amino acid amidase compare
PS417_07140 -1.2 -3.0 peptidase M48 compare
PS417_22570 -1.2 -0.8 H-NS histone compare
PS417_02485 -1.2 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04365 -1.2 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04290 -1.2 -4.2 hypothetical protein compare
PS417_20985 -1.2 -0.8 porin compare
PS417_15915 -1.2 -1.2 hypothetical protein compare
PS417_22300 -1.2 -1.3 LTXXQ domain protein compare
PS417_09930 -1.1 -1.4 hypothetical protein compare
PS417_16555 -1.1 -1.4 cupin compare
PS417_11435 -1.1 -2.9 asparagine synthase compare
PS417_23095 -1.1 -1.0 exodeoxyribonuclease compare
PS417_13205 -1.1 -1.8 isochorismate-pyruvate lyase compare
PS417_18070 -1.1 -1.0 general secretion pathway protein GspH compare
PS417_12755 -1.1 -1.8 RND transporter compare
PS417_22810 -1.1 -1.8 DNA base-flipping protein YbaZ compare
PS417_08170 -1.1 -7.0 capsular biosynthesis protein compare
PS417_07700 -1.1 -1.6 chromosome partitioning protein ParA compare
PS417_21955 -1.1 -1.9 dehydrogenase compare
PS417_05160 -1.1 -0.9 DNA polymerase III subunit chi compare
PS417_02870 -1.1 -3.9 TonB-dependent receptor compare
PS417_27475 -1.1 -1.8 membrane protein compare
PS417_01580 -1.0 -1.3 imidazole glycerol phosphate synthase compare
PS417_09235 -1.0 -0.8 molecular chaperone compare
PS417_18360 -1.0 -2.0 hypothetical protein compare
PS417_26645 -1.0 -1.6 chemotaxis protein compare
PS417_19675 -1.0 -4.4 chemotaxis protein CheY compare
PS417_00355 -1.0 -1.6 metal ABC transporter permease compare
PS417_24500 -1.0 -2.1 DEAD/DEAH box helicase compare
PS417_10265 -1.0 -2.3 peptidase compare
PS417_00580 -1.0 -3.1 acyl-CoA dehydrogenase compare
PS417_27595 -1.0 -2.2 recombinase XerC compare
PS417_02865 -1.0 -2.9 peptidase compare
PS417_14125 -1.0 -3.5 molybdenum ABC transporter ATP-binding protein compare
PS417_26815 -1.0 -1.6 peptidase M16 compare
PS417_28280 -0.9 -2.0 hypothetical protein compare
PS417_11670 -0.9 -1.9 multidrug transporter MATE compare
PS417_24935 -0.9 -0.9 hypothetical protein compare
PS417_10405 -0.9 -0.9 filamentous hemagglutinin compare
PS417_07820 -0.9 -1.7 transposase compare
PS417_10060 -0.9 -1.4 hypothetical protein compare
PS417_05165 -0.9 -1.6 cytosol aminopeptidase compare
PS417_02435 -0.9 -4.0 flagellar motor protein MotA compare
PS417_20030 -0.9 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_02440 -0.9 -1.5 flagellar motor protein MotB compare
PS417_19660 -0.9 -3.6 cobalamin biosynthesis protein CobQ compare
PS417_08540 -0.9 -1.5 RNA helicase compare
PS417_05560 -0.9 -1.2 ABC transporter compare
PS417_23250 -0.9 -2.9 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_19665 -0.9 -2.7 flagellar motor protein MotD compare
PS417_05235 -0.9 -1.0 peptidase inhibitor I42 compare
PS417_22000 -0.9 -2.2 glutathione S-transferase compare
PS417_03515 -0.9 -1.2 type III secretion protein compare
PS417_25315 -0.9 -2.7 membrane protein compare
PS417_00375 -0.9 -1.7 membrane protein compare
PS417_01630 -0.9 -1.2 hypothetical protein compare
PS417_24370 -0.9 -0.6 (2Fe-2S)-binding protein compare
PS417_07165 -0.9 -2.7 dihydrodipicolinate synthase compare
PS417_10010 -0.8 -1.9 Replication protein P compare
PS417_21420 -0.8 -6.2 aminodeoxychorismate lyase compare
PS417_21000 -0.8 -1.3 CrfX protein compare
PS417_06530 -0.8 -1.5 membrane protein compare
PS417_19350 -0.8 -2.6 GTP cyclohydrolase compare
PS417_05815 -0.8 -2.1 recombinase RecA compare
PS417_06370 -0.8 -1.0 cold-shock protein compare
PS417_02555 -0.8 -4.9 exoribonuclease R compare
PS417_18570 -0.8 -2.2 peptidoglycan-binding protein compare
PS417_05830 -0.8 -2.0 hypothetical protein compare
PS417_27815 -0.8 -0.8 hypothetical protein compare
PS417_03100 -0.8 -0.6 pilus assembly protein compare
PS417_13305 -0.8 -0.9 hypothetical protein compare
PS417_13855 -0.8 -0.8 acetyl-CoA acetyltransferase compare
PS417_19190 -0.8 -2.2 BolA family transcriptional regulator compare
PS417_02270 -0.8 -1.3 carbamoyltransferase compare
PS417_09160 -0.8 -1.0 GNAT family acetyltransferase compare
PS417_22210 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_28510 -0.8 -3.7 chromosome partitioning protein compare
PS417_28515 -0.8 -2.4 16S rRNA methyltransferase compare
PS417_04500 -0.8 -0.9 hypothetical protein compare
PS417_08770 -0.8 -1.8 hypothetical protein compare
PS417_27500 -0.7 -2.5 peptidylprolyl isomerase compare
PS417_14065 -0.7 -3.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22050 -0.7 -2.4 ribonuclease BN compare
PS417_26345 -0.7 -2.6 choline dehydrogenase compare
PS417_00045 -0.7 -1.0 glycerol acyltransferase compare
PS417_04025 -0.7 -3.5 glycine/betaine ABC transporter permease compare
PS417_00065 -0.7 -1.1 3-methyladenine DNA glycosylase compare
PS417_22815 -0.7 -3.8 permease compare
PS417_01850 -0.7 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16760 -0.7 -1.9 membrane protein compare
PS417_14935 -0.7 -2.3 transposase compare
PS417_00465 -0.7 -2.6 hypothetical protein compare
PS417_27875 -0.7 -4.0 histidine kinase compare
PS417_13445 -0.7 -1.1 D-aminopeptidase compare
PS417_12310 -0.7 -3.5 methionine synthase compare
PS417_16095 -0.7 -1.8 amidohydrolase compare
PS417_21355 -0.7 -1.5 hypothetical protein compare
PS417_27750 -0.7 -3.0 transcriptional regulator compare
PS417_04270 -0.7 -3.3 ribonuclease G compare
PS417_07190 -0.7 -2.0 MFS transporter compare
PS417_21360 -0.7 -0.7 termination factor Rho compare
PS417_06355 -0.7 -1.8 protein-L-isoaspartate O-methyltransferase compare
PS417_07455 -0.7 -0.8 glutamine amidotransferase compare
PS417_19325 -0.7 -1.7 hypothetical protein compare
PS417_01410 -0.7 -3.5 transporter compare
PS417_07305 -0.7 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_16060 -0.7 -1.7 protein tolQ compare
PS417_11400 -0.7 -1.0 phosphoglycerate mutase compare
PS417_12855 -0.7 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23210 -0.7 -1.1 serine acetyltransferase compare
PS417_00385 -0.7 -0.6 Fur family transcriptional regulator compare
PS417_09330 -0.7 -1.5 NAD(P)H-quinone oxidoreductase compare
PS417_14165 -0.7 -2.4 ArsR family transcriptional regulator compare
PS417_26335 -0.7 -1.2 BetI family transcriptional regulator compare
PS417_14120 -0.7 -3.5 molybdenum ABC transporter permease compare
PS417_14210 -0.7 -1.9 hypothetical protein compare
PS417_18435 -0.7 -1.6 hypothetical protein compare
PS417_01575 -0.7 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03655 -0.7 -1.7 short-chain dehydrogenase compare
PS417_12840 -0.7 -1.5 TetR family transcriptional regulator compare
PS417_17375 -0.7 -2.0 C4-dicarboxylate ABC transporter compare
PS417_27770 -0.7 -1.8 hypothetical protein compare
PS417_09935 -0.7 -2.2 hypothetical protein compare
PS417_27335 -0.6 -3.5 flagellar basal body protein FliL compare
PS417_11925 -0.6 -1.0 hypothetical protein compare
PS417_21380 -0.6 -1.9 GntR family transcriptional regulator compare
PS417_04020 -0.6 -3.6 glycine/betaine ABC transporter substrate-binding protein compare
PS417_01030 -0.6 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_12220 -0.6 -1.6 hydroxyacylglutathione hydrolase compare
PS417_09440 -0.6 -1.1 MerR family transcriptional regulator compare
PS417_14805 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_19505 -0.6 -0.9 2,4-diaminobutyrate 4-aminotransferase compare
PS417_20035 -0.6 -2.2 adenosylcobinamide kinase compare
PS417_21140 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_01590 -0.6 -1.2 polysaccharide deacetylase compare
PS417_00670 -0.6 -1.4 RNA polymerase sigma factor compare
PS417_26465 -0.6 -1.3 hypothetical protein compare
PS417_27115 -0.6 -2.7 putrescine ABC transporter, ATPase component (from data) compare
PS417_11245 -0.6 -2.2 RNA polymerase subunit sigma-24 compare
PS417_24285 -0.6 -2.3 GTP-binding protein compare
PS417_19335 -0.6 -1.6 isochorismatase compare
PS417_27340 -0.6 -1.6 NADPH:quinone oxidoreductase compare
PS417_14235 -0.6 -1.6 hypothetical protein compare
PS417_10655 -0.6 -1.6 LuxR family transcriptional regulator compare
PS417_27715 -0.6 -1.0 Fe-S oxidoreductase compare
PS417_23150 -0.6 -1.8 Cro/Cl family transcriptional regulator compare
PS417_08245 -0.6 -0.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23915 -0.6 -1.3 pantoate--beta-alanine ligase compare
PS417_06175 -0.6 -1.6 cysteine sulfinate desulfinase compare


Specific Phenotypes

For 6 genes in this experiment