Experiment set18IT045 for Pseudomonas putida KT2440

Compare to:

Growth at 25C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -6.6 -6.4 Ornithine carbamoyltransferase compare
PP_1986 -6.2 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_5348 -6.1 -9.3 Transcriptional regulator, LysR family compare
PP_5185 -6.0 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -5.7 -10.5 Branched-chain-amino-acid aminotransferase compare
PP_0082 -5.5 -6.6 tryptophan synthase alpha chain compare
PP_4679 -5.4 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -4.9 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -4.9 -8.8 tryptophan synthase beta chain compare
PP_4994 -4.8 -5.2 conserved protein of unknown function compare
PP_5346 -4.8 -9.1 pyruvate carboxylase subunit B compare
PP_4696 -4.6 -5.5 Nitrogen regulation protein NR(I) compare
PP_0184 -4.3 -8.8 Argininosuccinate lyase compare
PP_5347 -4.3 -11.2 pyruvate carboxylase subunit A compare
PP_2370 -4.2 -3.8 conserved protein of unknown function compare
PP_0290 -4.2 -8.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -4.2 -8.4 Histidinol dehydrogenase compare
PP_5289 -4.2 -5.1 Acetylglutamate kinase compare
PP_1988 -4.1 -7.1 3-isopropylmalate dehydrogenase compare
PP_5128 -4.0 -6.7 Dihydroxy-acid dehydratase compare
PP_1985 -4.0 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_4678 -3.9 -10.6 Ketol-acid reductoisomerase compare
PP_2168 -3.8 -9.8 Transaldolase compare
PP_5303 -3.8 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -3.7 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4804 -3.6 -4.2 RlpA-like lipoprotein compare
PP_4680 -3.4 -10.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -3.4 -6.9 O-succinylhomoserine sulfhydrylase compare
PP_1237 -3.4 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5097 -3.3 -10.4 homoserine O-acetyltransferase compare
PP_5098 -3.3 -5.8 methionine biosynthesis protein MetW compare
PP_0967 -3.2 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1898 -3.2 -3.7 MotA/TolQ/ExbB proton channel family protein compare
PP_1995 -3.1 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -3.1 -5.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -3.0 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2378 -3.0 -4.0 Fe/S biogenesis protein NfuA compare
PP_5350 -3.0 -5.7 Transcriptional regulator, RpiR family compare
PP_0417 -3.0 -10.9 Anthranilate synthase component 1 compare
PP_0420 -3.0 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -3.0 -7.1 phosphoserine phosphatase compare
PP_1088 -2.8 -7.4 Argininosuccinate synthase compare
PP_1022 -2.7 -6.1 glucose 6-phosphate-1-dehydrogenase compare
PP_3999 -2.7 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1362 -2.7 -4.9 pyruvate kinase II compare
PP_2327 -2.7 -5.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5007 -2.7 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4700 -2.7 -1.8 pantothenate synthetase compare
PP_0965 -2.6 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2337 -2.6 -4.4 aconitate isomerase compare
PP_5583 -2.6 -2.9 conserved protein of unknown function compare
PP_5095 -2.6 -1.6 pyrroline-5-carboxylate reductase compare
PP_1025 -2.6 -7.6 2-isopropylmalate synthase compare
PP_2328 -2.5 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_1233 -2.5 -5.4 sulfurtransferase compare
PP_4964 -2.4 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0630 -2.4 -1.5 DNA gyrase inhibitor YacG compare
PP_4120 -2.4 -4.4 NADH-quinone oxidoreductase subunit B compare
PP_0362 -2.4 -6.6 Biotin synthase compare
PP_0422 -2.4 -3.5 Indole-3-glycerol phosphate synthase compare
PP_1654 -2.2 -3.9 cysteine synthase B compare
PP_0421 -2.2 -4.1 Anthranilate phosphoribosyltransferase compare
PP_1764 -2.2 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1783 -2.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4984 -2.1 -7.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0364 -2.1 -5.3 pimeloyl-[acp] methyl ester esterase compare
PP_4364 -2.0 -3.6 putative Anti-sigma F factor antagonist compare
PP_5014 -2.0 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1912 -2.0 -3.5 Phosphate acyltransferase compare
PP_0363 -2.0 -7.2 8-amino-7-oxononanoate synthase compare
PP_0962 -2.0 -2.7 toluene-tolerance protein compare
PP_4890 -2.0 -2.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_3892 -2.0 -1.6 conserved protein of unknown function compare
PP_4379 -1.9 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2402 -1.9 -2.4 putative Sensor histidine kinase compare
PP_5216 -1.9 -1.3 exopolyphosphatase compare
PP_3484 -1.9 -5.3 Response regulator receiver protein compare
PP_1664 -1.9 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4785 -1.9 -4.8 conserved exported protein of unknown function compare
PP_1381 -1.8 -1.5 4-carboxymuconolactone decarboxylase compare
PP_4098 -1.8 -2.3 UvrABC system protein C compare
PP_0365 -1.8 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1231 -1.8 -3.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4699 -1.7 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4268 -1.7 -1.4 nucleoid-associated broad specificity regulator compare
PP_5015 -1.7 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0377 -1.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_0393 -1.7 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2633 -1.6 -1.9 conserved protein of unknown function compare
PP_1679 -1.6 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5552 -1.6 -2.5 conserved protein of unknown function compare
PP_4124 -1.6 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_4504 -1.6 -1.8 conserved exported protein of unknown function compare
PP_0787 -1.6 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3946 -1.5 -1.6 HTH-type transcriptional repressor NicR compare
PP_0366 -1.5 -3.8 dethiobiotin synthetase compare
PP_1656 -1.5 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2820 -1.5 -1.7 HTH-type transcriptional regulator nfxB compare
PP_4122 -1.5 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0914 -1.5 -5.4 GGDEF domain protein compare
PP_2403 -1.5 -1.3 Chemotaxis protein CheY compare
PP_4701 -1.4 -1.1 glucose-6-phosphate isomerase compare
PP_5217 -1.4 -5.3 Polyphosphate kinase compare
PP_4642 -1.4 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_1678 -1.4 -3.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1216 -1.4 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2390 -1.4 -4.5 Transcriptional regulator, LysR family compare
PP_3052 -1.4 -1.3 conserved protein of unknown function compare
PP_4693 -1.3 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_4247 -1.3 -0.9 Exonuclease compare
PP_2142 -1.3 -2.5 Cell division inhibitor SulA compare
PP_4720 -1.3 -1.7 putative RNA binding protein compare
PP_1553 -1.3 -1.0 conserved protein of unknown function compare
PP_3094 -1.3 -3.3 conserved exported protein of unknown function compare
PP_4480 -1.3 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_5203 -1.2 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_4988 -1.2 -4.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4131 -1.2 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_3715 -1.2 -1.6 Muconate cycloisomerase 1 compare
PP_2581 -1.2 -1.3 conserved protein of unknown function compare
PP_2274 -1.2 -4.1 conserved protein of unknown function compare
PP_5456 -1.2 -1.2 conserved protein of unknown function compare
PP_2416 -1.2 -2.4 putative Iron ABC transporter, ATP-binding protein compare
PP_1011 -1.2 -4.8 glucokinase compare
PP_5230 -1.2 -2.1 Tyrosine recombinase XerC compare
PP_2375 -1.2 -6.1 cobalamin-dependent methionine synthase compare
PP_1164 -1.1 -1.5 Transcriptional regulator, LysR family compare
PP_1770 -1.1 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4902 -1.1 -1.4 Oligoribonuclease compare
PP_4561 -1.1 -0.9 stress response protein compare
PP_1552 -1.1 -2.7 putative Phage replication protein compare
PP_5640 -1.1 -1.3 conserved protein of unknown function compare
PP_3239 -1.1 -1.1 putative cointegrate resolution protein T Tn4652 compare
PP_3926 -1.1 -1.0 short-chain dehydrogenase compare
PP_4406 -1.1 -1.0 conserved protein of unknown function compare
PP_5140 -1.1 -1.6 Transcriptional regulator, MerR family compare
PP_2336 -1.1 -2.9 aconitate hydratase 1 compare
PP_2388 -1.1 -1.3 Transporter, LysE family compare
PP_0547 -1.1 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3522 -1.1 -2.1 conserved protein of unknown function compare
PP_2899 -1.1 -1.1 conserved exported protein of unknown function compare
PP_1128 -1.0 -1.9 OmpA family protein compare
PP_5008 -1.0 -0.7 Poly granule-associated protein compare
PP_0291 -1.0 -1.0 conserved protein of unknown function compare
PP_2203 -1.0 -0.8 conserved protein of unknown function compare
PP_0135 -1.0 -1.7 conserved exported protein of unknown function compare
PP_0958 -1.0 -2.5 phospholipid ABC transporter ATP-binding subunit compare
PP_3417 -1.0 -2.5 D-gluconate transporter compare
PP_5639 -1.0 -4.5 conserved exported protein of unknown function compare
PP_5453 -1.0 -1.0 conserved protein of unknown function compare
PP_1493 -1.0 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1774 -1.0 -2.6 conserved exported protein of unknown function compare
PP_1015 -1.0 -3.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5582 -1.0 -1.1 conserved protein of unknown function compare
PP_4054 -1.0 -1.9 conserved protein of unknown function compare
PP_5104 -1.0 -3.6 thiazole synthase compare
PP_4271 -1.0 -0.8 conserved protein of unknown function compare
PP_2765 -1.0 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_2302 -0.9 -2.3 DNA-binding, ATP-dependent protease compare
PP_1571 -0.9 -1.6 conserved protein of unknown function compare
PP_1655 -0.9 -2.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1826 -0.9 -1.1 Hydrolase, isochorismatase family compare
PP_3770 -0.9 -1.3 conserved protein of unknown function compare
PP_1926 -0.9 -1.4 putative phosphotyrosine-protein phosphatase compare
PP_3158 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1062 -0.9 -1.5 MutT/nudix family protein compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_4329 -0.9 -1.6 FlhB domain protein compare
PP_1439 -0.9 -1.3 conserved exported protein of unknown function compare
PP_1629 -0.9 -2.8 Protein RecA compare
PP_2429 -0.9 -1.4 putative Membrane protein compare
PP_5075 -0.9 -4.3 glutamate synthase (NADPH) beta subunit compare
PP_4126 -0.9 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_3908 -0.9 -1.8 conserved protein of unknown function compare
PP_2547 -0.9 -2.5 Transcriptional regulator, LysR family compare
PP_4782 -0.9 -2.5 Phosphomethylpyrimidine kinase compare
PP_1589 -0.9 -3.9 uridylyltransferase compare
PP_2497 -0.9 -1.5 conserved protein of unknown function compare
PP_4121 -0.9 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4571 -0.9 -3.8 cysteine synthase A compare
PP_4260 -0.8 -2.6 conserved protein of unknown function compare
PP_4830 -0.8 -3.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_5076 -0.8 -5.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4198 -0.8 -2.8 OmpA family protein compare
PP_5331 -0.8 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_1621 -0.8 -2.0 Protein-L-isoaspartate O-methyltransferase compare
PP_0725 -0.8 -1.8 conserved hypothetical TPR repeat protein compare
PP_1009 -0.8 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0138 -0.8 -4.9 conserved membrane protein of unknown function compare
PP_3206 -0.8 -2.9 conserved protein of unknown function compare
PP_0685 -0.8 -1.5 conserved protein of unknown function compare
PP_1190 -0.8 -2.2 conserved protein of unknown function compare
PP_4826 -0.8 -2.5 Precorrin-3B C17-methyltransferase compare
PP_5035 -0.8 -3.0 Histidine utilization repressor compare
PP_4471 -0.8 -1.6 Magnesium transporter compare
PP_2088 -0.8 -1.1 RNA polymerase sigma factor SigX compare
PP_2637 -0.8 -2.6 endo-1,4-D-glucanase subunit of cellulose synthase compare
PP_0794 -0.8 -1.8 1-phosphofructokinase monomer compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms