Experiment set18IT045 for Pseudomonas putida KT2440

Compare to:

Growth at 25C; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_1215 +1.5 2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0593 +1.4 2.2 putative ribosome-binding factor compare
PP_5594 +1.4 2.6 conserved protein of unknown function compare
PP_3773 +1.3 2.0 conserved protein of unknown function compare
PP_1186 +1.2 2.0 two component system DNA-binding transcriptional dual regulator compare
PP_5475 +1.2 2.3 conserved protein of unknown function compare
PP_4355 +1.2 3.6 flagellar export apparatus subunit compare
PP_0512 +1.1 4.4 hypothetical protein compare
PP_5393 +1.1 2.0 putative metal-binding chaperone compare
PP_1623 +1.1 5.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_5701 +1.1 1.5 conserved protein of unknown function compare
PP_1142 +1.1 1.5 conserved protein of unknown function compare
PP_1208 +1.0 2.1 conserved protein of unknown function, SlyX family compare
PP_5604 +1.0 1.6 putative subtilisin-like serine protease compare
PP_1001 +1.0 2.2 arginine deiminase compare
PP_3541 +1.0 3.5 Transporter, MgtC family compare
PP_2253 +0.9 0.9 Transcriptional regulator, GntR family compare
PP_3353 +0.9 4.0 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_2055 +0.9 2.9 putative isomerase compare
PP_1097 +0.9 1.2 Methionine--tRNA ligase compare
PP_5324 +0.9 3.3 Response regulator compare
PP_4874 +0.9 0.9 50S ribosomal protein L9 compare
PP_1994 +0.9 1.6 tRNA pseudouridine (38-40)synthase compare
PP_0719 +0.9 0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5445 +0.9 2.1 conserved protein of unknown function compare
PP_4517 +0.9 1.4 conserved protein of unknown function compare
PP_3245 +0.8 2.1 conserved protein of unknown function compare
PP_2331 +0.8 3.9 conserved membrane protein of unknown function compare
PP_4584 +0.8 3.5 putative endonuclease compare
PP_3647 +0.8 3.4 putative Oxidoreductase compare
PP_5337 +0.8 2.8 LysR family transcriptional regulator compare
PP_1862 +0.8 1.8 conserved membrane protein of unknown function compare
PP_1344 +0.8 1.1 conserved protein of unknown function compare
PP_3808 +0.8 2.0 Antibiotic synthesis protein MbtH compare
PP_4196 +0.8 2.8 conserved exported protein of unknown function compare
PP_2318 +0.8 2.8 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3899 +0.8 2.3 conserved protein of unknown function, hicB family compare
PP_1008 +0.8 2.5 RNA polymerase subunit sigma-24 compare
PP_4373 +0.8 6.1 Transcriptional regulator FleQ compare
PP_4997 +0.8 1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1366 +0.8 0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_1503 +0.7 1.7 conserved protein of unknown function compare
PP_0168 +0.7 6.5 putative surface adhesion protein compare
PP_3519 +0.7 1.0 putative Lipoprotein compare
PP_t12 +0.7 1.0 tRNA-Thr compare
PP_1864 +0.7 2.3 conserved protein of unknown function compare
PP_3307 +0.7 1.8 conserved protein of unknown function compare
PP_5748 +0.7 0.6 cytochrome c heme lyase subunit compare
PP_4353 +0.7 3.1 Flagellar biosynthetic protein fliR compare
PP_0166 +0.7 5.1 HlyD family secretion protein compare
PP_3866 +0.7 2.2 conserved protein of unknown function compare
PP_2677 +0.7 2.1 conserved exported protein of unknown function compare
PP_1410 +0.7 0.8 conserved protein of unknown function compare
PP_2716 +0.7 2.1 arsenate reductase compare
PP_4952 +0.7 1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1979 +0.7 2.1 putative Hydrolase compare
PP_4875 +0.7 1.7 conserved membrane protein of unknown function compare
PP_5328 +0.7 0.8 putative phosphate transport system permease protein compare
PP_3814 +0.7 2.4 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_5598 +0.7 1.6 conserved protein of unknown function compare
PP_2530 +0.7 1.8 conserved protein of unknown function compare
PP_4943 +0.7 1.0 putative Glycosyl transferase compare
PP_0874 +0.7 1.5 conserved protein of unknown function compare
PP_2747 +0.7 1.2 conserved protein of unknown function compare
PP_4519 +0.7 4.8 Agglutination protein compare
PP_5327 +0.6 1.6 putative phosphate ABC transporter, permease subunit compare
PP_4386 +0.6 2.5 flagellar basal-body rod protein FlgF compare
PP_1575 +0.6 1.5 conserved protein of unknown function compare
PP_1733 +0.6 1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1004 +0.6 1.4 conserved protein of unknown function compare
PP_0123 +0.6 3.4 DNA polymerase I, 5 compare
PP_0972 +0.6 1.6 UPF0213 protein PP_0972 compare
PP_4057 +0.6 1.9 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_0167 +0.6 5.0 Toxin secretion ATP-binding protein compare
PP_t29 +0.6 0.5 tRNA-Ala compare
PP_3707 +0.6 2.0 conserved protein of unknown function compare
PP_4697 +0.6 2.0 poly(A) polymerase compare
PP_2319 +0.6 1.9 conserved protein of unknown function compare
PP_4251 +0.6 1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_1404 +0.6 1.1 conserved protein of unknown function compare
PP_5709 +0.6 2.7 protein of unknown function compare
PP_1207 +0.6 1.6 conserved protein of unknown function compare
PP_3924 +0.6 0.9 conserved protein of unknown function compare
PP_1428 +0.6 0.7 Sigma factor AlgU negative regulatory protein compare
PP_2227 +0.6 2.1 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_1535 +0.6 2.0 putative Methyltransferase compare
PP_5223 +0.6 2.4 regulator of nucleotide diphosphokinase compare
PP_4066 +0.6 1.5 methylglutaconyl-CoA hydratase compare
PP_2144 +0.6 1.3 Transcriptional regulator, TetR family compare
PP_0888 +0.6 1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0653 +0.6 1.0 conserved protein of unknown function compare
PP_3328 +0.6 0.9 putative Ring-cleaving dioxygenase compare
PP_3073 +0.6 1.9 3-hydroxybutyrate dehydrogenase compare
PP_5017 +0.6 0.8 Sec-independent protein translocase protein TatB compare
PP_2737 +0.6 1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5666 +0.6 1.4 putative microcin B17-like processing protein, McbB family compare
PP_5051 +0.6 0.8 conserved protein of unknown function compare
PP_4217 +0.6 4.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2616 +0.6 2.3 conserved protein of unknown function compare
PP_0319 +0.5 0.5 conserved protein of unknown function compare
PP_2960 +0.5 1.6 transcriptional regulator, AraC family compare
PP_0852 +0.5 1.4 Transcriptional regulator, Cro/CI family compare
PP_3312 +0.5 1.1 putative Heat shock protein compare
PP_2759 +0.5 0.8 ribose ABC transporter - ATP-binding subunit compare
PP_4171 +0.5 5.1 conserved exported protein of unknown function compare
PP_1211 +0.5 1.6 conserved protein of unknown function compare
PP_5538 +0.5 2.1 putative ABC transporter, substrate-binding protein compare
PP_4223 +0.5 0.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2694 +0.5 2.5 Aldehyde dehydrogenase family protein compare
PP_0834 +0.5 0.7 Sec translocation complex subunit YajC compare
PP_2764 +0.5 1.4 FMN reductase (NADPH) compare
PP_5621 +0.5 1.0 protein of unknown function compare
PP_2232 +0.5 1.2 XRE family transcriptional regulator compare
PP_0401 +0.5 1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_0116 +0.5 2.7 putative lipoprotein compare
PP_3447 +0.5 0.7 conserved membrane protein of unknown function compare
PP_2795 +0.5 2.0 AMP-binding domain protein compare
PP_0509 +0.5 1.2 conserved protein of unknown function compare
PP_5241 +0.5 1.2 DNA-binding response regulator, LuxR family compare
PP_5502 +0.5 1.8 ribosome modulation factor compare
PP_0165 +0.5 4.0 GGDEF domain protein compare
PP_2730 +0.5 2.5 putative Lipoprotein compare
PP_1763 +0.5 1.3 putative oxidoreductase compare
PP_2857 +0.5 0.8 conserved exported protein of unknown function compare
PP_1660 +0.5 2.2 conserved protein of unknown function compare
PP_0048 +0.5 0.8 conserved protein of unknown function compare
PP_4946 +0.5 2.5 sodium/L-proline transporter compare
PP_4833 +0.5 1.0 SURF1 domain protein compare
PP_1042 +0.5 2.0 Type II secretion system protein K compare
PP_2847 +0.5 0.8 Urease accessory protein UreJ compare
PP_1027 +0.5 2.2 Exodeoxyribonuclease 7 large subunit compare
PP_2306 +0.5 0.6 conserved exported protein of unknown function compare
PP_3726 +0.5 0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_2749 +0.5 1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2496 +0.5 2.2 conserved protein of unknown function compare
PP_2121 +0.5 0.8 putative Lipoprotein compare
PP_4343 +0.5 1.7 Flagellar biosynthesis protein FlhF compare
PP_3742 +0.5 1.8 Glutathione S-transferase family protein compare
PP_4593 +0.5 0.9 conserved protein of unknown function compare
PP_3265 +0.5 1.5 putative phosphohydrolase of unknown function compare
PP_5725 +0.5 1.5 protein of unknown function compare
PP_4778 +0.5 1.0 23S rRNA pseudouridine 2457 synthase compare
PP_0948 +0.5 0.9 Phosphocarrier protein HPr compare
PP_5211 +0.5 1.6 ChaC-related protein compare
PP_2863 +0.5 1.1 conserved membrane protein of unknown function compare
PP_3640 +0.5 1.2 Transcriptional regulator, AraC family compare
PP_3824 +0.5 0.8 conserved exported protein of unknown function compare
PP_3362 +0.5 1.6 Transcriptional regulator, AsnC family compare
PP_4545 +0.5 1.6 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_1576 +0.5 2.1 putative Immunity protein compare
PP_3551 +0.5 0.8 DNA-binding response regulator, LuxR family compare
PP_5675 +0.5 1.6 conserved protein of unknown function compare
PP_5023 +0.5 2.0 Amino acid ABC transporter, permease protein compare
PP_0804 +0.5 2.6 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2689 +0.5 2.0 putative Endoribonuclease compare
PP_3685 +0.5 1.3 conserved protein of unknown function compare
PP_1408 +0.5 3.3 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_1349 +0.5 1.7 ATP:cob(I)alamin adenosyltransferase compare
PP_4385 +0.5 1.9 flagellar basal-body rod protein FlgG compare
PP_1892 +0.5 0.8 conserved protein of unknown function compare
PP_2330 +0.5 1.7 conserved protein of unknown function compare
PP_0565 +0.5 0.9 putative enzyme compare
PP_2573 +0.5 2.2 conserved protein of unknown function compare
PP_5491 +0.5 0.8 conserved protein of unknown function with SEC-C motif domain compare
PP_0408 +0.5 2.7 conserved exported protein of unknown function compare
PP_5586 +0.5 1.6 exported protein of unknown function compare
PP_1544 +0.5 1.3 conserved protein of unknown function compare
PP_3314 +0.5 1.5 Heat shock protein, HSP20 family compare
PP_1066 +0.5 1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0773 +0.5 2.0 OmpA/MotB domain-containing protein compare
PP_0805 +0.5 2.6 Outer membrane efflux protein compare
PP_3763 +0.5 1.8 putative CobF protein compare
PP_1310 +0.5 0.9 conserved hypothetical protein compare
PP_0758 +0.5 2.2 conserved protein of unknown function compare
PP_2061 +0.5 1.1 conserved protein of unknown function compare
PP_0306 +0.5 1.0 conserved protein of unknown function compare
PP_1578 +0.5 2.1 conserved protein of unknown function compare
PP_5093 +0.5 0.8 twitching motility protein compare
PP_2379 +0.5 1.9 putative cytochrome oxidase biogenesis protein compare
PP_2873 +0.5 1.7 conserved protein of unknown function, UPF0145 family compare
PP_0574 +0.5 3.3 DNA-binding response regulator, LuxR family compare
PP_5054 +0.5 1.4 glutaredoxin 3 compare
PP_3969 +0.5 1.5 Response regulator compare
PP_0254 +0.5 1.7 conserved protein of unknown function compare
PP_2939 +0.5 2.1 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3682 +0.5 1.2 conserved protein of unknown function compare
PP_1084 +0.5 2.1 putative peroxiredoxin compare
PP_0891 +0.4 1.6 conserved exported protein of unknown function compare
PP_1479 +0.4 1.9 HicB protein compare
PP_1168 +0.4 1.5 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_1605 +0.4 1.0 Ribonuclease HII compare
PP_0995 +0.4 1.9 conserved membrane protein of unknown function compare
PP_4233 +0.4 1.5 putative Oxidoreductase, small subunit compare
PP_5157 +0.4 1.6 conserved exported protein of unknown function compare
PP_0287 +0.4 2.5 conserved exported protein of unknown function compare
PP_0276 +0.4 0.6 Transcriptional regulator, Cro/CI family compare
PP_3733 +0.4 2.3 putative ABC transporter lipoprotein compare
PP_1417 +0.4 1.5 putative Tricarboxylate transport protein TctB compare
PP_5403 +0.4 2.3 conserved protein of unknown function compare
PP_1556 +0.4 1.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms