Experiment set18IT044 for Pseudomonas putida KT2440

Compare to:

Growth at 25C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -6.7 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_0083 -6.0 -4.1 tryptophan synthase beta chain compare
PP_5289 -5.8 -4.0 Acetylglutamate kinase compare
PP_4678 -5.5 -14.2 Ketol-acid reductoisomerase compare
PP_0048 -5.4 -1.3 conserved protein of unknown function compare
PP_0630 -5.1 -1.3 DNA gyrase inhibitor YacG compare
PP_5014 -5.1 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -5.0 -3.4 Nitrogen regulation protein NR(I) compare
PP_3511 -4.7 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_0082 -4.7 -7.3 tryptophan synthase alpha chain compare
PP_5346 -4.4 -8.8 pyruvate carboxylase subunit B compare
PP_1654 -4.4 -3.0 cysteine synthase B compare
PP_4680 -4.4 -11.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4364 -4.3 -3.9 putative Anti-sigma F factor antagonist compare
PP_0290 -4.2 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5347 -4.1 -10.2 pyruvate carboxylase subunit A compare
PP_1898 -4.1 -3.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2747 -4.1 -2.0 conserved protein of unknown function compare
PP_2168 -4.0 -6.7 Transaldolase compare
PP_0967 -4.0 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -4.0 -9.3 homoserine O-acetyltransferase compare
PP_4679 -3.8 -5.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0834 -3.8 -2.2 Sec translocation complex subunit YajC compare
PP_5185 -3.7 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -3.7 -6.5 Dihydroxy-acid dehydratase compare
PP_2327 -3.6 -5.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0292 -3.6 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -3.6 -6.4 phosphoserine phosphatase compare
PP_5348 -3.6 -5.6 Transcriptional regulator, LysR family compare
PP_2370 -3.5 -2.3 conserved protein of unknown function compare
PP_0422 -3.4 -3.3 Indole-3-glycerol phosphate synthase compare
PP_5303 -3.4 -3.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -3.3 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0065 -3.3 -5.2 NAD-binding component of TrK potassium transporter compare
PP_0420 -3.3 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0406 -3.2 -3.6 Nucleotidyltransferase family protein compare
PP_4874 -3.2 -1.5 50S ribosomal protein L9 compare
PP_0966 -3.2 -6.2 Histidinol dehydrogenase compare
PP_2371 -3.1 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -3.0 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1988 -3.0 -4.6 3-isopropylmalate dehydrogenase compare
PP_3999 -3.0 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4253 -3.0 -2.8 cytochrome c oxidase subunit, cbb3-type compare
PP_2001 -2.9 -6.1 O-succinylhomoserine sulfhydrylase compare
PP_0184 -2.9 -5.0 Argininosuccinate lyase compare
PP_5028 -2.8 -5.0 proline iminopeptidase compare
PP_5015 -2.8 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1995 -2.7 -5.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -2.7 -6.8 Argininosuccinate synthase compare
PP_0421 -2.6 -4.4 Anthranilate phosphoribosyltransferase compare
PP_0417 -2.6 -9.5 Anthranilate synthase component 1 compare
PP_2328 -2.6 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -2.6 -1.2 pyrroline-5-carboxylate reductase compare
PP_4122 -2.5 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5098 -2.5 -4.4 methionine biosynthesis protein MetW compare
PP_1986 -2.5 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_0366 -2.5 -3.1 dethiobiotin synthetase compare
PP_5279 -2.4 -2.7 conserved protein of unknown function compare
PP_0888 -2.4 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_3840 -2.4 -1.5 conserved protein of unknown function compare
PP_0362 -2.4 -6.8 Biotin synthase compare
PP_1679 -2.3 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1079 -2.3 -2.8 Ornithine carbamoyltransferase compare
PP_3110 -2.3 -1.1 protein of unknown function compare
PP_0364 -2.3 -4.2 pimeloyl-[acp] methyl ester esterase compare
PP_0965 -2.2 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4126 -2.2 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_1025 -2.1 -5.8 2-isopropylmalate synthase compare
PP_3946 -2.1 -1.2 HTH-type transcriptional repressor NicR compare
PP_4994 -2.1 -2.8 conserved protein of unknown function compare
PP_3315 -2.1 -3.0 conserved membrane protein of unknown function compare
PP_4268 -2.1 -1.4 nucleoid-associated broad specificity regulator compare
PP_1362 -2.0 -3.2 pyruvate kinase II compare
PP_4593 -2.0 -1.5 conserved protein of unknown function compare
PP_1022 -2.0 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_0914 -1.9 -4.9 GGDEF domain protein compare
PP_0001 -1.9 -1.5 probable chromosome-partitioning protein compare
PP_4785 -1.9 -5.7 conserved exported protein of unknown function compare
PP_5216 -1.9 -1.2 exopolyphosphatase compare
PP_1293 -1.9 -1.5 molybdopterin synthase small subunit compare
PP_1176 -1.9 -1.6 conserved protein of unknown function compare
PP_3312 -1.9 -1.1 putative Heat shock protein compare
PP_0289 -1.9 -4.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0261 -1.8 -3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0719 -1.8 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3919 -1.8 -2.2 conserved protein of unknown function compare
PP_3484 -1.8 -2.6 Response regulator receiver protein compare
PP_4131 -1.7 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_2378 -1.7 -2.2 Fe/S biogenesis protein NfuA compare
PP_0998 -1.7 -4.2 conserved protein of unknown function compare
PP_1493 -1.7 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4426 -1.7 -3.5 Amino acid ABC transporter, permease protein compare
PP_5008 -1.7 -1.2 Poly granule-associated protein compare
PP_4964 -1.7 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1231 -1.6 -3.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0848 -1.6 -1.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3241 -1.6 -1.2 conserved exported protein of unknown function compare
PP_4377 -1.6 -2.1 putative Flagellin FlaG compare
PP_0401 -1.6 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_t29 -1.6 -1.0 tRNA-Ala compare
PP_5155 -1.6 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5203 -1.6 -3.5 5-formyltetrahydrofolate cyclo-ligase compare
PP_2388 -1.6 -2.4 Transporter, LysE family compare
PP_0363 -1.5 -4.3 8-amino-7-oxononanoate synthase compare
PP_5217 -1.5 -5.1 Polyphosphate kinase compare
PP_0959 -1.5 -1.3 phospholipid ABC transporter compare
PP_4424 -1.5 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2217 -1.5 -1.5 enoyl-CoA hydratase compare
PP_1233 -1.5 -2.2 sulfurtransferase compare
PP_4699 -1.4 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4133 -1.4 -1.2 Transcriptional regulator-related protein compare
PP_1589 -1.4 -4.1 uridylyltransferase compare
PP_0735 -1.4 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_3748 -1.4 -2.5 conserved hypothetical protein compare
PP_1656 -1.4 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_3824 -1.4 -2.4 conserved exported protein of unknown function compare
PP_4895 -1.4 -2.5 tRNA dimethylallyltransferase compare
PP_2306 -1.4 -1.8 conserved exported protein of unknown function compare
PP_4054 -1.4 -1.2 conserved protein of unknown function compare
PP_1864 -1.4 -2.1 conserved protein of unknown function compare
PP_1757 -1.4 -2.0 DNA-binding transcriptional dual regulator compare
PP_0291 -1.4 -1.5 conserved protein of unknown function compare
PP_4660 -1.3 -3.2 Transcriptional regulator, LysR family compare
PP_1845 -1.3 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5227 -1.3 -4.0 diaminopimelate decarboxylase compare
PP_5350 -1.3 -1.9 Transcriptional regulator, RpiR family compare
PP_1051 -1.3 -2.0 Type II secretion pathway protein XcpV compare
PP_3064 -1.3 -1.4 Phage tail protein compare
PP_4811 -1.3 -2.1 Gamma-glutamyl phosphate reductase compare
PP_0789 -1.3 -2.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4787 -1.3 -1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5104 -1.3 -3.9 thiazole synthase compare
PP_4693 -1.3 -2.8 RNA polymerase-binding transcription factor DksA compare
PP_4984 -1.3 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5225 -1.3 -1.0 frataxin compare
PP_5090 -1.3 -1.2 putative cell division protein compare
PP_1528 -1.2 -1.1 conserved protein of unknown function compare
PP_3790 -1.2 -3.6 diaminopimelate epimerase compare
PP_1664 -1.2 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4824 -1.2 -3.3 Sensor histidine kinase/response regulator compare
PP_0781 -1.2 -1.1 conserved protein of unknown function compare
PP_5143 -1.2 -1.3 conserved membrane protein of unknown function compare
PP_0152 -1.2 -0.8 conserved exported protein of unknown function compare
PP_3738 -1.2 -1.9 putative Transcriptional regulator VanR compare
PP_5628 -1.2 -1.4 conserved protein of unknown function compare
PP_2504 -1.2 -2.3 putative tautomerase K2 compare
PP_1979 -1.2 -1.7 putative Hydrolase compare
PP_4966 -1.2 -0.8 transcriptional regulator of methionine metabolism compare
PP_2309 -1.2 -1.0 conserved protein of unknown function compare
PP_3295 -1.1 -2.7 YeeE/YedE family protein compare
PP_3417 -1.1 -2.3 D-gluconate transporter compare
PP_5274 -1.1 -1.7 conserved protein of unknown function compare
PP_0516 -1.1 -1.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0365 -1.1 -2.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2414 -1.1 -0.8 conserved exported protein of unknown function compare
PP_0164 -1.1 -2.1 conserved protein of unknown function compare
PP_2390 -1.1 -2.6 Transcriptional regulator, LysR family compare
PP_4121 -1.1 -2.6 NADH-quinone oxidoreductase subunit C/D compare
PP_1770 -1.1 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5168 -1.1 -1.2 sulfate/thiosulfate import ATP-binding protein compare
PP_2784 -1.1 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1571 -1.1 -1.3 conserved protein of unknown function compare
PP_2880 -1.1 -0.9 Transcriptional regulator, TetR family compare
PP_2997 -1.1 -2.7 CnmA compare
PP_0513 -1.1 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5427 -1.1 -2.0 conserved exported protein of unknown function compare
PP_0278 -1.1 -3.6 conserved protein of unknown function compare
PP_1764 -1.1 -1.1 Phosphoglycolate phosphatase 2 compare
PP_4977 -1.1 -3.4 5,10-methylenetetrahydrofolate reductase compare
PP_2582 -1.1 -3.3 putative Heme oxygenase compare
PP_1426 -1.1 -4.3 L-aspartate oxidase compare
PP_1655 -1.1 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4828 -1.1 -0.9 Precorrin-8X methylmutase compare
PP_4480 -1.1 -3.3 arginine N-succinyltransferase, subunit alpha compare
PP_4379 -1.1 -1.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5048 -1.1 -2.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1124 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_5639 -1.0 -3.7 conserved exported protein of unknown function compare
PP_5075 -1.0 -4.0 glutamate synthase (NADPH) beta subunit compare
PP_5176 -1.0 -1.6 conserved protein of unknown function compare
PP_0138 -1.0 -3.9 conserved membrane protein of unknown function compare
PP_4227 -1.0 -0.7 conserved protein of unknown function compare
PP_2032 -1.0 -2.1 putative ATPase compare
PP_2513 -1.0 -1.6 4-oxalomesaconate tautomerase compare
PP_2539 -1.0 -3.8 Transcriptional regulator, LysR family compare
PP_0398 -1.0 -1.5 Thiosulfate sulfurtransferase GlpE compare
PP_4582 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_4301 -1.0 -1.3 Pyruvate kinase compare
PP_0235 -1.0 -1.2 Peroxidase compare
PP_0900 -1.0 -1.0 PAP2 family protein compare
PP_1012 -1.0 -1.8 DNA-binding response regulator compare
PP_4861 -1.0 -2.7 conserved protein of unknown function compare
PP_3136 -0.9 -2.4 putative O-acetyltransferase compare
PP_1099 -0.9 -1.2 Cold shock protein CapB compare
PP_5557 -0.9 -1.4 protein of unknown function compare
PP_0236 -0.9 -1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_3102 -0.9 -1.9 conserved protein of unknown function compare
PP_4925 -0.9 -1.0 conserved protein of unknown function compare
PP_1346 -0.9 -2.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms