Experiment set18IT044 for Pseudomonas putida KT2440

Compare to:

Growth at 25C; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_5093 +2.1 2.8 twitching motility protein compare
PP_5329 +2.0 4.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3447 +1.8 2.3 conserved membrane protein of unknown function compare
PP_1428 +1.7 2.5 Sigma factor AlgU negative regulatory protein compare
PP_1215 +1.7 2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0855 +1.6 2.4 conserved protein of unknown function compare
PP_1216 +1.5 2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5594 +1.4 3.3 conserved protein of unknown function compare
PP_5475 +1.4 0.9 conserved protein of unknown function compare
PP_0232 +1.4 2.1 ATP-binding taurine transporter subunit compare
PP_0240 +1.3 4.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4098 +1.3 2.4 UvrABC system protein C compare
PP_3726 +1.3 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_3773 +1.3 3.1 conserved protein of unknown function compare
PP_5658 +1.3 3.3 protein of unknown function compare
PP_4094 +1.2 1.5 conserved protein of unknown function compare
PP_1142 +1.2 1.4 conserved protein of unknown function compare
PP_1322 +1.2 1.8 putative Lipoprotein compare
PP_1513 +1.2 3.6 Ribosomal RNA small subunit methyltransferase J compare
PP_4517 +1.2 2.1 conserved protein of unknown function compare
PP_3243 +1.2 2.6 Acetyltransferase, GNAT family compare
PP_4271 +1.2 1.3 conserved protein of unknown function compare
PP_4837 +1.2 1.5 conserved protein of unknown function compare
PP_3449 +1.2 2.2 conserved exported protein of unknown function compare
PP_2526 +1.1 2.0 conserved membrane protein of unknown function compare
PP_5328 +1.1 2.0 putative phosphate transport system permease protein compare
PP_3899 +1.1 2.9 conserved protein of unknown function, hicB family compare
PP_4569 +1.1 3.7 conserved protein of unknown function compare
PP_4561 +1.1 1.2 stress response protein compare
PP_2907 +1.1 3.3 DNA-binding response regulator compare
PP_1544 +1.1 2.0 conserved protein of unknown function compare
PP_0801 +1.1 1.4 conserved exported protein of unknown function compare
PP_1733 +1.1 2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5230 +1.1 3.1 Tyrosine recombinase XerC compare
PP_2633 +1.1 1.5 conserved protein of unknown function compare
PP_4952 +1.1 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0999 +1.1 2.3 carbamate kinase compare
PP_2737 +1.0 1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0770 +1.0 3.6 PemI-like protein compare
PP_2976 +1.0 1.3 putative transposase compare
PP_5569 +1.0 2.6 protein of unknown function of phage origin compare
PP_0846 +1.0 0.9 DnaK-like molecular chaperone specific for IscU compare
PP_5310 +1.0 3.2 junction-specific ATP-dependent DNA helicase compare
PP_4942 +1.0 1.8 conserved protein of unknown function compare
PP_5568 +1.0 3.3 conserved membrane protein of unknown function compare
PP_4058 +1.0 5.2 1,4-alpha-glucan branching enzyme compare
PP_0677 +1.0 1.6 putative Lipoprotein compare
PP_1055 +1.0 0.8 Type II secretion pathway protein GspN compare
PP_5528 +1.0 1.6 conserved protein of unknown function compare
PP_3505 +1.0 1.3 conserved protein of unknown function compare
PP_4940 +1.0 5.8 Putative glycosyltransferase compare
PP_2330 +1.0 2.5 conserved protein of unknown function compare
PP_1044 +1.0 2.7 Lipoprotein UxpA compare
PP_3876 +1.0 1.4 conserved protein of unknown function compare
PP_2318 +0.9 3.2 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_5488 +0.9 1.9 conserved protein of unknown function compare
PP_1987 +0.9 2.0 Methlytransferase, UbiE/COQ5 family compare
PP_1556 +0.9 2.4 conserved protein of unknown function compare
PP_1038 +0.9 1.6 conserved protein of unknown function compare
PP_2559 +0.9 2.3 Metalloprotease secretion protein compare
PP_5338 +0.9 1.4 aspartate ammonia-lyase compare
PP_0119 +0.9 2.0 putative zinc uptake regulation protein ZUR compare
PP_5617 +0.9 3.3 conserved protein of unknown function compare
PP_2337 +0.9 2.0 aconitate isomerase compare
PP_2950 +0.9 2.0 conserved protein of unknown function compare
PP_0166 +0.9 6.1 HlyD family secretion protein compare
PP_2581 +0.9 1.4 conserved protein of unknown function compare
PP_3551 +0.9 1.4 DNA-binding response regulator, LuxR family compare
PP_3040 +0.8 2.1 Pyocin R2_PP, holin compare
PP_0123 +0.8 4.0 DNA polymerase I, 5 compare
PP_4004 +0.8 2.3 DNA translocase FtsK compare
PP_5430 +0.8 1.7 protein of unknown function compare
PP_5519 +0.8 2.6 conserved protein of unknown function of phage origin compare
PP_1045 +0.8 1.7 Type II secretion pathway protein XcpP compare
PP_3882 +0.8 2.0 putative Phage terminase, small subunit compare
PP_3050 +0.8 2.8 conserved protein of unknown function compare
PP_4519 +0.8 6.0 Agglutination protein compare
PP_4938 +0.8 4.2 putative Glycosyl transferase compare
PP_1466 +0.8 1.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_3926 +0.8 0.6 short-chain dehydrogenase compare
PP_0504 +0.8 2.5 Outer membrane protein OprG compare
PP_5001 +0.8 1.6 protease HslVU, ATPase component compare
PP_0984 +0.8 2.2 conserved membrane protein of unknown function compare
PP_1623 +0.8 4.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_0167 +0.8 6.2 Toxin secretion ATP-binding protein compare
PP_4482 +0.8 1.3 Transcriptional regulator, AraC family compare
PP_2499 +0.8 1.0 conserved protein of unknown function compare
PP_5486 +0.8 1.6 conserved protein of unknown function compare
PP_3105 +0.8 0.8 conserved membrane protein of unknown function compare
PP_1862 +0.8 2.3 conserved membrane protein of unknown function compare
PP_0313 +0.8 2.6 putative electron transfer flavoprotein beta subunit compare
PP_3901 +0.8 3.1 conserved protein of unknown function compare
PP_3034 +0.8 1.0 putative Regulator protein compare
PP_2697 +0.8 2.3 putative oxidoreductase containing a flavin reductase domain compare
PP_1892 +0.8 1.5 conserved protein of unknown function compare
PP_3100 +0.8 2.6 conserved protein of unknown function compare
PP_5051 +0.8 1.3 conserved protein of unknown function compare
PP_1909 +0.8 2.0 putative septum formation protein compare
PP_2439 +0.8 3.1 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_2203 +0.8 0.9 conserved protein of unknown function compare
PP_5295 +0.8 0.9 conserved protein of unknown function compare
PP_3460 +0.8 1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5073 +0.8 1.4 conserved exported protein of unknown function compare
PP_3407 +0.7 2.1 conserved protein of unknown function compare
PP_4449 +0.7 2.7 conserved protein of unknown function compare
PP_2575 +0.7 0.5 conserved exported protein of unknown function compare
PP_5038 +0.7 1.3 conserved lipoprotein of unknown function compare
PP_2050 +0.7 3.0 conserved protein of unknown function compare
PP_5315 +0.7 2.7 Rubredoxin-1 compare
PP_5103 +0.7 3.4 tRNA (guanine-N(7)-)-methyltransferase compare
PP_2648 +0.7 1.6 Universal stress protein family compare
PP_4871 +0.7 1.3 putative lysine decarboxylase family protein compare
PP_2189 +0.7 1.7 conserved protein of unknown function compare
PP_5652 +0.7 1.6 conserved protein of unknown function, phage origin compare
PP_0246 +0.7 1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_4936 +0.7 3.3 O-antigen polymerase compare
PP_0168 +0.7 6.1 putative surface adhesion protein compare
PP_4205 +0.7 2.0 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2828 +0.7 2.0 conserved protein of unknown function compare
PP_0922 +0.7 2.2 conserved protein of unknown function compare
PP_0642 +0.7 1.4 conserved membrane protein of unknown function compare
PP_2580 +0.7 1.0 conserved protein of unknown function compare
PP_5525 +0.7 1.9 conserved exported protein of unknown function compare
PP_2510 +0.7 1.0 conserved protein of unknown function compare
PP_4120 +0.7 1.6 NADH-quinone oxidoreductase subunit B compare
PP_1265 +0.7 2.0 conserved protein of unknown function compare
PP_0852 +0.7 3.0 Transcriptional regulator, Cro/CI family compare
PP_0685 +0.7 1.0 conserved protein of unknown function compare
PP_2864 +0.7 2.0 conserved protein of unknown function compare
PP_5621 +0.7 1.0 protein of unknown function compare
PP_2960 +0.7 1.6 transcriptional regulator, AraC family compare
PP_5107 +0.7 1.8 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_5500 +0.7 1.6 protein of unknown function compare
PP_3089 +0.7 2.2 conserved protein of unknown function compare
PP_1097 +0.7 0.8 Methionine--tRNA ligase compare
PP_3531 +0.7 1.8 conserved exported protein of unknown function compare
PP_2341 +0.7 1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1300 +0.7 2.2 putative amino acid ABC transporter - ATP-binding subunit compare
PP_2750 +0.7 2.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4961 +0.7 1.4 putative Lipoprotein compare
PP_2456 +0.7 1.8 D-ribose ABC transporter - permease subunit compare
PP_4555 +0.7 1.5 conserved protein of unknown function compare
PP_2159 +0.7 3.0 Copper-binding protein, plastocyanin/azurin family compare
PP_2333 +0.7 1.9 GntR family transcriptional regulator compare
PP_1559 +0.7 2.1 Holin compare
PP_2331 +0.7 2.7 conserved membrane protein of unknown function compare
PP_4707 +0.7 0.9 OsmY-related protein compare
PP_2131 +0.7 1.9 DNA-binding ATPase involved in replication compare
PP_5610 +0.7 1.4 protein of unknown function compare
PP_3971 +0.7 1.1 conserved protein of unknown function compare
PP_0509 +0.7 1.8 conserved protein of unknown function compare
PP_4504 +0.7 0.5 conserved exported protein of unknown function compare
PP_0593 +0.7 0.7 putative ribosome-binding factor compare
PP_5441 +0.7 1.1 protein of unknown function compare
PP_1207 +0.7 2.3 conserved protein of unknown function compare
PP_3522 +0.7 2.1 conserved protein of unknown function compare
PP_0711 +0.7 1.8 putative hydrolase compare
PP_4726 +0.7 0.9 Chaperone protein DnaJ compare
PP_5547 +0.7 1.7 protein of unknown function compare
PP_4820 +0.7 1.9 tRNA-dihydrouridine synthase B compare
PP_0754 +0.7 2.5 conserved protein of unknown function compare
PP_1001 +0.7 1.0 arginine deiminase compare
PP_5597 +0.6 1.1 conserved protein of unknown function compare
PP_4743 +0.6 2.1 conserved protein of unknown function compare
PP_2026 +0.6 1.9 conserved protein of unknown function compare
PP_5133 +0.6 2.4 conserved membrane protein of unknown function compare
PP_5054 +0.6 0.7 glutaredoxin 3 compare
PP_5445 +0.6 1.1 conserved protein of unknown function compare
PP_3676 +0.6 2.3 conserved protein of unknown function compare
PP_4057 +0.6 1.6 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_5337 +0.6 2.3 LysR family transcriptional regulator compare
PP_4797 +0.6 1.5 conserved protein of unknown function compare
PP_2757 +0.6 2.2 putative Sugar-binding protein compare
PP_1578 +0.6 2.5 conserved protein of unknown function compare
PP_3883 +0.6 1.6 putative Phage holin compare
PP_2759 +0.6 1.4 ribose ABC transporter - ATP-binding subunit compare
PP_0995 +0.6 2.9 conserved membrane protein of unknown function compare
PP_2503 +0.6 1.8 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_3825 +0.6 2.1 conserved protein of unknown function compare
PP_1042 +0.6 1.6 Type II secretion system protein K compare
PP_1074 +0.6 1.5 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3074 +0.6 2.2 D-beta-hydroxybutyrate permease compare
PP_2077 +0.6 2.6 diaminopimelate decarboxylase compare
PP_5491 +0.6 0.9 conserved protein of unknown function with SEC-C motif domain compare
PP_2207 +0.6 2.2 conserved membrane protein of unknown function compare
PP_5566 +0.6 1.8 protein of unknown function compare
PP_4901 +0.6 1.9 conserved inner membrane protein compare
PP_1646 +0.6 1.2 putative Thioredoxin compare
PP_4266 +0.6 1.4 Adenine phosphoribosyltransferase compare
PP_4844 +0.6 1.3 putative Urea ABC transporter, ATP-binding protein compare
PP_0989 +0.6 1.1 glycine cleavage system H protein 1 compare
PP_2883 +0.6 1.0 conserved protein of unknown function compare
PP_2232 +0.6 1.9 XRE family transcriptional regulator compare
PP_2700 +0.6 0.9 AhpC/TSA family protein compare
PP_0774 +0.6 3.1 Phosphate acetyltransferase compare
PP_3247 +0.6 2.0 Transporter, bile acid/Na+ symporter family compare
PP_2756 +0.6 1.6 conserved protein of unknown function compare
PP_0352 +0.6 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4385 +0.6 2.3 flagellar basal-body rod protein FlgG compare
PP_0832 +0.6 1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms