Experiment set18IT043 for Pseudomonas simiae WCS417

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PS417_08125 -3.1 -1.0 prephenate dehydratase compare
PS417_18310 -2.9 -2.2 hypothetical protein compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_21430 -2.4 -2.4 3-oxoacyl-ACP synthase compare
PS417_00185 -2.3 -3.1 tryptophan synthase subunit beta compare
PS417_04365 -2.1 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06685 -2.1 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_00180 -2.0 -3.2 tryptophan synthase subunit alpha compare
PS417_22300 -1.8 -1.8 LTXXQ domain protein compare
PS417_22450 -1.6 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_27300 -1.6 -1.0 cell division protein ZapA compare
PS417_21125 -1.5 -4.6 phosphoadenosine phosphosulfate reductase compare
PS417_17215 -1.5 -2.9 peptidylprolyl isomerase compare
PS417_20340 -1.5 -2.1 hypothetical protein compare
PS417_08435 -1.5 -1.8 pilus assembly protein PilZ compare
PS417_20125 -1.4 -2.6 phosphoribosylglycinamide formyltransferase compare
PS417_08245 -1.4 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_00045 -1.4 -1.7 glycerol acyltransferase compare
PS417_16400 -1.4 -2.1 NAD(P)H-quinone oxidoreductase compare
PS417_23950 -1.4 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_03380 -1.3 -1.1 hypothetical protein compare
PS417_13010 -1.3 -1.9 alpha/beta hydrolase compare
PS417_00510 -1.3 -1.2 membrane protein compare
PS417_17000 -1.2 -2.9 MerR family transcriptional regulator compare
PS417_25390 -1.2 -3.7 MFS transporter compare
PS417_07710 -1.2 -4.0 membrane protein compare
PS417_27245 -1.2 -2.9 aminotransferase DegT compare
PS417_27770 -1.2 -3.4 hypothetical protein compare
PS417_23545 -1.2 -1.8 gamma-glutamyl kinase compare
PS417_08365 -1.2 -1.0 hypothetical protein compare
PS417_16490 -1.2 -1.5 cell division protein FtsK compare
PS417_07170 -1.2 -2.6 hypothetical protein compare
PS417_26815 -1.2 -2.0 peptidase M16 compare
PS417_17070 -1.2 -2.0 RNA polymerase subunit sigma-24 compare
PS417_02280 -1.2 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_08155 -1.2 -1.1 integration host factor subunit beta compare
PS417_01920 -1.1 -0.8 ATP-dependent protease subunit HslV compare
PS417_05830 -1.1 -2.5 hypothetical protein compare
PS417_27815 -1.1 -1.4 hypothetical protein compare
PS417_27290 -1.1 -1.6 hypothetical protein compare
PS417_22350 -1.1 -1.0 Fis family transcriptional regulator compare
PS417_27135 -1.1 -0.6 glutamine synthetase compare
PS417_26645 -1.1 -2.5 chemotaxis protein compare
PS417_04390 -1.1 -3.8 toluene tolerance protein compare
PS417_08515 -1.0 -1.9 hypothetical protein compare
PS417_03100 -1.0 -1.1 pilus assembly protein compare
PS417_27155 -1.0 -1.4 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08185 -1.0 -2.5 glycosyl transferase compare
PS417_22565 -1.0 -0.6 formyltetrahydrofolate deformylase compare
PS417_02895 -1.0 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_22520 -1.0 -1.3 histidine kinase compare
PS417_15305 -1.0 -1.7 type VI secretion protein compare
PS417_03260 -0.9 -0.8 5S ribosomal RNA compare
PS417_08220 -0.9 -0.8 epimerase compare
PS417_11925 -0.9 -1.3 hypothetical protein compare
PS417_01950 -0.9 -4.1 malate dehydrogenase compare
PS417_00355 -0.9 -1.7 metal ABC transporter permease compare
PS417_23385 -0.9 -4.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23370 -0.9 -2.4 protoheme IX farnesyltransferase compare
PS417_01965 -0.9 -1.5 fimbriae biosynthesis protein compare
PS417_25710 -0.9 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_27520 -0.9 -2.2 uroporphyrin-III methyltransferase compare
PS417_15095 -0.9 -1.8 hypothetical protein compare
PS417_01030 -0.9 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_10985 -0.9 -0.9 NADH:flavin oxidoreductase compare
PS417_07945 -0.9 -2.0 hypothetical protein compare
PS417_10575 -0.9 -1.3 DNA alkylation repair protein compare
PS417_02560 -0.9 -1.5 23S rRNA methyltransferase compare
PS417_18560 -0.9 -3.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25700 -0.9 -1.4 cyclic AMP receptor protein compare
PS417_22850 -0.9 -3.7 virulence factor family protein compare
PS417_27490 -0.9 -1.9 hypothetical protein compare
PS417_04440 -0.9 -1.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_22375 -0.9 -0.6 cold-shock protein compare
PS417_26530 -0.8 -1.1 hypothetical protein compare
PS417_23380 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_16640 -0.8 -2.0 toxin compare
PS417_19945 -0.8 -3.0 MarR family transcriptional regulator compare
PS417_21655 -0.8 -0.8 aspartate kinase compare
PS417_01095 -0.8 -0.7 amino acid ABC transporter ATP-binding protein compare
PS417_19285 -0.8 -1.3 ankyrin compare
PS417_16100 -0.8 -2.5 antibiotic biosynthesis monooxygenase compare
PS417_02990 -0.8 -1.5 hypothetical protein compare
PS417_22570 -0.8 -0.6 H-NS histone compare
PS417_01515 -0.8 -3.0 alpha/beta hydrolase compare
PS417_25765 -0.8 -1.5 transcriptional regulator compare
PS417_06635 -0.8 -0.9 ferredoxin compare
PS417_26305 -0.8 -2.7 AraC family transcriptional regulator compare
PS417_00925 -0.8 -1.3 hypothetical protein compare
PS417_10680 -0.7 -1.7 enoyl-CoA hydratase compare
PS417_02485 -0.7 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14940 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_22050 -0.7 -2.5 ribonuclease BN compare
PS417_04385 -0.7 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_27675 -0.7 -1.7 xanthine phosphoribosyltransferase compare
PS417_26785 -0.7 -1.7 membrane protein compare
PS417_04180 -0.7 -1.1 GntR family transcriptional regulator compare
PS417_12290 -0.7 -3.0 sulfite reductase compare
PS417_10010 -0.7 -1.7 Replication protein P compare
PS417_07560 -0.7 -0.8 universal stress protein UspA compare
PS417_19835 -0.7 -0.7 flagellar biosynthesis protein FliS compare
PS417_06375 -0.7 -0.5 deoxycytidine triphosphate deaminase compare
PS417_27795 -0.7 -0.4 orotate phosphoribosyltransferase compare
PS417_13795 -0.7 -3.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_10120 -0.7 -2.7 hypothetical protein compare
PS417_21000 -0.7 -1.1 CrfX protein compare
PS417_05815 -0.7 -1.8 recombinase RecA compare
PS417_08225 -0.7 -1.4 acetolactate synthase compare
PS417_23210 -0.7 -1.2 serine acetyltransferase compare
PS417_08950 -0.7 -2.2 DeoR faimly transcriptional regulator compare
PS417_24085 -0.7 -1.8 protein RnfH compare
PS417_27640 -0.7 -0.7 TetR family transcriptional regulator compare
PS417_00545 -0.7 -2.0 hypothetical protein compare
PS417_16520 -0.7 -1.1 cold-shock protein compare
PS417_17795 -0.7 -1.2 ABC transporter permease compare
PS417_10535 -0.7 -2.6 hypothetical protein compare
PS417_24605 -0.7 -1.6 thiamine-phosphate pyrophosphorylase compare
PS417_25720 -0.7 -3.1 anthranilate synthase component II compare
PS417_24630 -0.7 -2.5 ATP-binding protein compare
PS417_04595 -0.7 -1.3 cell division protein MraZ compare
PS417_07140 -0.7 -1.2 peptidase M48 compare
PS417_04275 -0.7 -4.8 hypothetical protein compare
PS417_17455 -0.7 -2.1 cytochrome C compare
PS417_05325 -0.7 -1.8 fimbrial protein compare
PS417_14200 -0.7 -1.3 hypothetical protein compare
PS417_01735 -0.7 -1.8 ABC transporter permease compare
PS417_15465 -0.7 -2.1 carboxynorspermidine decarboxylase compare
PS417_25725 -0.7 -4.4 anthranilate synthase component I compare
PS417_10385 -0.6 -1.5 peroxiredoxin compare
PS417_18370 -0.6 -1.5 hypothetical protein compare
PS417_10715 -0.6 -1.7 Cro/Cl family transcriptional regulator compare
PS417_01130 -0.6 -1.4 L-glyceraldehyde 3-phosphate reductase compare
PS417_19720 -0.6 -1.1 DNA-binding protein compare
PS417_14315 -0.6 -1.2 2,5-dioxovalerate dehydrogenase compare
PS417_12775 -0.6 -2.7 GntR family transcriptional regulator compare
PS417_18545 -0.6 -1.8 cell division protein compare
PS417_15540 -0.6 -0.9 NUDIX hydrolase compare
PS417_09420 -0.6 -1.0 LysR family transcriptional regulator compare
PS417_05975 -0.6 -0.5 chemotaxis protein CheW compare
PS417_19705 -0.6 -1.1 flagellar biosynthesis regulator FlhF compare
PS417_05010 -0.6 -1.4 IclR family transcriptional regulator compare
PS417_26420 -0.6 -1.0 hypothetical protein compare
PS417_27635 -0.6 -1.3 magnesium chelatase compare
PS417_17035 -0.6 -0.8 Cro/Cl family transcriptional regulator compare
PS417_10505 -0.6 -1.5 hypothetical protein compare
PS417_23025 -0.6 -2.4 murein transglycosylase compare
PS417_02495 -0.6 -2.7 GTPase HflX compare
PS417_13425 -0.6 -0.6 cupin compare
PS417_27085 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_12380 -0.6 -2.0 peptidase S54 compare
PS417_16760 -0.6 -2.2 membrane protein compare
PS417_14085 -0.6 -1.9 hypothetical protein compare
PS417_18425 -0.6 -1.0 sporulation protein compare
PS417_05695 -0.6 -1.6 transcriptional regulator compare
PS417_28280 -0.6 -2.3 hypothetical protein compare
PS417_08620 -0.6 -0.6 hypothetical protein compare
PS417_12970 -0.6 -1.9 FMN-dependent NADH-azoreductase compare
PS417_09470 -0.6 -0.6 hypothetical protein compare
PS417_04035 -0.6 -1.9 hypothetical protein compare
PS417_12165 -0.6 -1.8 microcin ABC transporter ATP-binding protein compare
PS417_11520 -0.6 -2.2 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_27360 -0.6 -1.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_05985 -0.6 -1.5 chemotaxis protein CheY compare
PS417_14935 -0.6 -1.5 transposase compare
PS417_20915 -0.6 -1.5 hypothetical protein compare
PS417_14160 -0.6 -1.9 hypothetical protein compare
PS417_15920 -0.6 -1.7 TetR family transcriptional regulator compare
PS417_19490 -0.6 -1.7 mechanosensitive ion channel protein compare
PS417_19450 -0.6 -2.1 Patatin compare
PS417_25895 -0.6 -1.0 glyoxalase compare
PS417_18635 -0.6 -1.4 4-hydroxybenzoyl-CoA thioesterase compare
PS417_27555 -0.6 -1.5 DNA-binding protein compare
PS417_10470 -0.6 -2.5 membrane protein compare
PS417_05885 -0.6 -2.9 potassium transporter Kup compare
PS417_02705 -0.6 -1.3 urease accessory protein UreF compare
PS417_15975 -0.6 -0.5 glutamate carboxypeptidase compare
PS417_15105 -0.6 -2.3 membrane protein compare
PS417_23915 -0.6 -2.0 pantoate--beta-alanine ligase compare
PS417_19950 -0.6 -2.7 ATP-dependent DNA helicase RecQ compare
PS417_25145 -0.6 -0.9 hypothetical protein compare
PS417_01200 -0.6 -2.6 phosphoesterase compare
PS417_07400 -0.6 -1.2 hypothetical protein compare
PS417_26070 -0.5 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_19600 -0.5 -0.6 exonuclease compare
PS417_16750 -0.5 -1.2 ABC transporter ATP-binding protein compare
PS417_24535 -0.5 -1.0 membrane protein compare
PS417_02555 -0.5 -3.8 exoribonuclease R compare
PS417_13145 -0.5 -0.9 50S ribosomal protein L21 compare
PS417_14710 -0.5 -0.9 isochorismatase compare
PS417_27515 -0.5 -1.8 heme biosynthesis protein HemY compare
PS417_07565 -0.5 -0.9 hypothetical protein compare
PS417_27110 -0.5 -1.4 spermidine/putrescine ABC transporter permease compare
PS417_12220 -0.5 -0.9 hydroxyacylglutathione hydrolase compare
PS417_15745 -0.5 -1.1 lipid carrier protein compare
PS417_13895 -0.5 -1.1 chemotaxis protein CheB compare
PS417_10245 -0.5 -0.7 hypothetical protein compare
PS417_12310 -0.5 -2.5 methionine synthase compare
PS417_18780 -0.5 -0.7 flavin reductase compare
PS417_27380 -0.5 -1.4 GntR family transcriptional regulator compare
PS417_14125 -0.5 -1.4 molybdenum ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms