Experiment set18IT042 for Pseudomonas simiae WCS417

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.3 -1.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -3.1 -1.2 prephenate dehydratase compare
PS417_21625 -2.7 -1.9 DNA-binding protein compare
PS417_21480 -2.2 -2.2 23S rRNA pseudouridylate synthase compare
PS417_27795 -2.1 -1.2 orotate phosphoribosyltransferase compare
PS417_17945 -2.1 -1.4 hypothetical protein compare
PS417_00705 -1.9 -1.5 MarR family transcriptional regulator compare
PS417_05975 -1.8 -1.2 chemotaxis protein CheW compare
PS417_27800 -1.7 -2.0 exodeoxyribonuclease III compare
PS417_16490 -1.7 -1.7 cell division protein FtsK compare
PS417_22450 -1.7 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_04380 -1.6 -1.4 ABC transporter permease compare
PS417_26730 -1.6 -0.8 pyrroline-5-carboxylate reductase compare
PS417_09245 -1.5 -1.6 recombinase RdgC compare
PS417_27585 -1.5 -2.0 diaminopimelate epimerase compare
PS417_20855 -1.3 -1.2 hypothetical protein compare
PS417_00045 -1.3 -2.0 glycerol acyltransferase compare
PS417_17215 -1.3 -2.4 peptidylprolyl isomerase compare
PS417_28145 -1.3 -1.7 AraC family transcriptional regulator compare
PS417_00180 -1.2 -2.3 tryptophan synthase subunit alpha compare
PS417_00185 -1.2 -2.3 tryptophan synthase subunit beta compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_10985 -1.2 -1.2 NADH:flavin oxidoreductase compare
PS417_20125 -1.1 -3.2 phosphoribosylglycinamide formyltransferase compare
PS417_08840 -1.1 -6.0 serine/threonine protein kinase compare
PS417_15510 -1.1 -2.1 hypothetical protein compare
PS417_17070 -1.0 -1.5 RNA polymerase subunit sigma-24 compare
PS417_14400 -1.0 -2.4 hypothetical protein compare
PS417_00660 -1.0 -2.3 DSBA oxidoreductase compare
PS417_06680 -1.0 -5.0 nuclease PIN compare
PS417_08835 -1.0 -4.4 ABC transporter compare
PS417_02485 -1.0 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24705 -1.0 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_13055 -1.0 -1.9 aminotransferase compare
PS417_04650 -1.0 -0.5 D-alanine--D-alanine ligase compare
PS417_18105 -1.0 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_23370 -0.9 -2.7 protoheme IX farnesyltransferase compare
PS417_18055 -0.9 -1.0 general secretion pathway protein GspK compare
PS417_01950 -0.9 -3.6 malate dehydrogenase compare
PS417_24155 -0.9 -1.0 ATP-binding protein compare
PS417_27595 -0.9 -1.8 recombinase XerC compare
PS417_23375 -0.9 -1.8 cytochrome C oxidase compare
PS417_10010 -0.9 -2.8 Replication protein P compare
PS417_07565 -0.9 -1.5 hypothetical protein compare
PS417_19520 -0.9 -2.4 transcriptional regulator compare
PS417_21475 -0.9 -2.5 HAD family hydrolase compare
PS417_04500 -0.9 -1.2 hypothetical protein compare
PS417_27640 -0.9 -1.1 TetR family transcriptional regulator compare
PS417_09235 -0.9 -0.8 molecular chaperone compare
PS417_15890 -0.8 -1.3 RNA polymerase sigma factor compare
PS417_23545 -0.8 -1.9 gamma-glutamyl kinase compare
PS417_21430 -0.8 -1.4 3-oxoacyl-ACP synthase compare
PS417_01605 -0.8 -0.9 phosphoglycerate mutase compare
PS417_27300 -0.8 -0.8 cell division protein ZapA compare
PS417_14140 -0.8 -1.8 membrane protein compare
PS417_19720 -0.8 -1.6 DNA-binding protein compare
PS417_25225 -0.8 -1.5 MFS transporter compare
PS417_20985 -0.8 -0.9 porin compare
PS417_12755 -0.8 -2.0 RND transporter compare
PS417_02560 -0.8 -1.3 23S rRNA methyltransferase compare
PS417_13885 -0.8 -2.0 chemotaxis protein CheY compare
PS417_00065 -0.8 -1.1 3-methyladenine DNA glycosylase compare
PS417_09085 -0.8 -1.0 hypothetical protein compare
PS417_23315 -0.8 -1.1 transcriptional regulator compare
PS417_08090 -0.8 -0.7 3-oxoacyl-ACP reductase compare
PS417_12325 -0.8 -2.0 precorrin-4 C11-methyltransferase compare
PS417_15655 -0.8 -3.0 hypothetical protein compare
PS417_04220 -0.8 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_23380 -0.7 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_16850 -0.7 -2.3 cation:proton antiporter compare
PS417_28515 -0.7 -2.4 16S rRNA methyltransferase compare
PS417_23385 -0.7 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_18310 -0.7 -0.8 hypothetical protein compare
PS417_18235 -0.7 -1.4 nitrile hydratase compare
PS417_15005 -0.7 -2.1 hypothetical protein compare
PS417_17455 -0.7 -2.7 cytochrome C compare
PS417_13295 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_14245 -0.7 -1.2 hypothetical protein compare
PS417_14755 -0.7 -1.5 UV damage repair endonuclease UvdE compare
PS417_02895 -0.7 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_27425 -0.7 -4.6 exopolyphosphatase compare
PS417_23025 -0.7 -3.3 murein transglycosylase compare
PS417_18560 -0.7 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02845 -0.7 -1.7 ABC transporter permease compare
PS417_07540 -0.7 -2.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_18760 -0.7 -1.8 hypothetical protein compare
PS417_09680 -0.7 -1.3 hydrolase compare
PS417_26805 -0.7 -0.8 cell division protein FtsE compare
PS417_22210 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_08230 -0.7 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04595 -0.7 -1.5 cell division protein MraZ compare
PS417_24125 -0.7 -2.2 hypothetical protein compare
PS417_12520 -0.7 -1.4 hypothetical protein compare
PS417_17635 -0.7 -2.5 hemolysin secretion protein D compare
PS417_02080 -0.7 -3.3 histidine ammonia-lyase compare
PS417_01590 -0.7 -1.7 polysaccharide deacetylase compare
PS417_13175 -0.7 -1.4 iron transporter compare
PS417_00725 -0.7 -3.7 RND transporter compare
PS417_07655 -0.7 -2.7 glycerophosphodiester phosphodiesterase compare
PS417_11615 -0.7 -0.9 urea ABC transporter ATP-binding protein compare
PS417_27870 -0.7 -2.4 ATP-dependent DNA helicase RecG compare
PS417_00925 -0.7 -1.6 hypothetical protein compare
PS417_01635 -0.7 -2.4 nitrogen regulation protein NR(I) compare
PS417_22565 -0.7 -0.5 formyltetrahydrofolate deformylase compare
PS417_02680 -0.7 -1.8 hypothetical protein compare
PS417_03320 -0.7 -4.8 hypothetical protein compare
PS417_13140 -0.6 -1.3 oxidoreductase compare
PS417_26990 -0.6 -0.5 RNA pyrophosphohydrolase compare
PS417_15100 -0.6 -1.5 BatB protein compare
PS417_10995 -0.6 -1.6 GntR family transcriptional regulator compare
PS417_23615 -0.6 -1.9 sulfate transporter compare
PS417_22775 -0.6 -3.3 histidine kinase compare
PS417_13445 -0.6 -1.1 D-aminopeptidase compare
PS417_06745 -0.6 -1.3 polysaccharide deacetylase compare
PS417_22050 -0.6 -2.2 ribonuclease BN compare
PS417_10050 -0.6 -1.0 hypothetical protein compare
PS417_09305 -0.6 -2.1 hypothetical protein compare
PS417_12565 -0.6 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_18690 -0.6 -1.8 aromatic amino acid aminotransferase compare
PS417_08185 -0.6 -1.8 glycosyl transferase compare
PS417_24115 -0.6 -1.3 hypothetical protein compare
PS417_05570 -0.6 -1.9 DeoR faimly transcriptional regulator compare
PS417_27205 -0.6 -1.8 adenylate cyclase compare
PS417_17645 -0.6 -1.1 RND transporter compare
PS417_24765 -0.6 -2.7 membrane protein compare
PS417_09330 -0.6 -2.0 NAD(P)H-quinone oxidoreductase compare
PS417_02045 -0.6 -1.6 3-oxoacyl-ACP synthase compare
PS417_23910 -0.6 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_01920 -0.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_08505 -0.6 -2.4 membrane protein compare
PS417_06780 -0.6 -1.8 TetR family transcriptional regulator compare
PS417_21125 -0.6 -2.9 phosphoadenosine phosphosulfate reductase compare
PS417_23820 -0.6 -2.3 hypothetical protein compare
PS417_05905 -0.6 -1.6 hypothetical protein compare
PS417_18020 -0.6 -1.2 hypothetical protein compare
PS417_23170 -0.6 -1.4 FeS assembly protein IscX compare
PS417_01975 -0.6 -2.6 pilus assembly protein PilQ compare
PS417_20340 -0.6 -1.3 hypothetical protein compare
PS417_16310 -0.6 -1.9 membrane protein compare
PS417_04775 -0.6 -1.8 short-chain dehydrogenase compare
PS417_00845 -0.6 -0.9 transcriptional regulator compare
PS417_18990 -0.6 -1.8 membrane protein compare
PS417_25055 -0.6 -2.2 transposase compare
PS417_24370 -0.6 -0.6 (2Fe-2S)-binding protein compare
PS417_12540 -0.6 -1.4 hypothetical protein compare
PS417_19955 -0.6 -1.3 hypothetical protein compare
PS417_03100 -0.5 -0.8 pilus assembly protein compare
PS417_12130 -0.5 -3.1 ketodeoxygluconokinase compare
PS417_21015 -0.5 -1.5 EstX protein compare
PS417_05790 -0.5 -1.7 hypothetical protein compare
PS417_17545 -0.5 -1.9 2-oxoisovalerate dehydrogenase compare
PS417_12005 -0.5 -1.6 hypothetical protein compare
PS417_12855 -0.5 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08320 -0.5 -0.8 metal-chelation protein CHAD compare
PS417_06335 -0.5 -1.6 S-formylglutathione hydrolase compare
PS417_14890 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_18885 -0.5 -1.0 GntR family transcriptional regulator compare
PS417_22840 -0.5 -0.9 tRNA-Met compare
PS417_26305 -0.5 -1.8 AraC family transcriptional regulator compare
PS417_03510 -0.5 -1.9 type III secretion system negative regulatory protein RspV compare
PS417_19610 -0.5 -1.3 molybdenum cofactor sulfurase compare
PS417_07700 -0.5 -1.3 chromosome partitioning protein ParA compare
PS417_17840 -0.5 -1.4 betaine-aldehyde dehydrogenase compare
PS417_05830 -0.5 -1.1 hypothetical protein compare
PS417_06540 -0.5 -1.0 membrane protein compare
PS417_26910 -0.5 -2.6 membrane protein compare
PS417_21360 -0.5 -0.7 termination factor Rho compare
PS417_27315 -0.5 -0.8 hypothetical protein compare
PS417_25315 -0.5 -2.1 membrane protein compare
PS417_14655 -0.5 -0.7 lysine transporter LysE compare
PS417_22005 -0.5 -1.4 epimerase compare
PS417_08845 -0.5 -1.7 hypothetical protein compare
PS417_07710 -0.5 -2.0 membrane protein compare
PS417_20880 -0.5 -1.2 GntR family transcriptional regulator compare
PS417_08515 -0.5 -1.6 hypothetical protein compare
PS417_24745 -0.5 -1.1 gamma-glutamyl phosphate reductase compare
PS417_11180 -0.5 -1.5 TetR family transcriptional regulator compare
PS417_12265 -0.5 -1.6 ACP phosphodiesterase compare
PS417_15540 -0.5 -0.7 NUDIX hydrolase compare
PS417_05065 -0.5 -1.1 hypothetical protein compare
PS417_16855 -0.5 -1.0 cation:proton antiporter compare
PS417_17475 -0.5 -2.5 histidine kinase compare
PS417_04090 -0.5 -1.3 hypothetical protein compare
PS417_19350 -0.5 -2.2 GTP cyclohydrolase compare
PS417_07410 -0.5 -1.6 hypothetical protein compare
PS417_16640 -0.5 -1.5 toxin compare
PS417_17015 -0.5 -1.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_08770 -0.5 -1.1 hypothetical protein compare
PS417_13505 -0.5 -1.6 alpha/beta hydrolase compare
PS417_13345 -0.5 -2.0 MFS transporter permease compare
PS417_18360 -0.5 -1.3 hypothetical protein compare
PS417_17450 -0.5 -1.7 amino acid ABC transporter substrate-binding protein compare
PS417_18590 -0.5 -2.0 SAM-dependent methyltransferase compare
PS417_15885 -0.5 -0.6 GCN5 family acetyltransferase compare
PS417_27815 -0.5 -0.8 hypothetical protein compare
PS417_01045 -0.5 -1.4 RND transporter compare
PS417_15480 -0.5 -1.1 ABC transporter substrate-binding protein compare
PS417_15770 -0.5 -0.7 pyridoxine 5'-phosphate oxidase compare
PS417_02335 -0.5 -1.5 multidrug DMT transporter compare
PS417_06045 -0.5 -0.8 membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms