Experiment set18IT040 for Pseudomonas simiae WCS417

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_22450 -4.0 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_27795 -3.9 -1.3 orotate phosphoribosyltransferase compare
PS417_08620 -3.8 -1.8 hypothetical protein compare
PS417_00385 -3.6 -1.7 Fur family transcriptional regulator compare
PS417_27290 -3.6 -2.4 hypothetical protein compare
PS417_08125 -3.3 -1.1 prephenate dehydratase compare
PS417_18310 -2.3 -2.3 hypothetical protein compare
PS417_04650 -2.1 -0.9 D-alanine--D-alanine ligase compare
PS417_20985 -2.0 -1.3 porin compare
PS417_27800 -2.0 -1.9 exodeoxyribonuclease III compare
PS417_02880 -1.9 -1.8 copper chaperone compare
PS417_00180 -1.8 -3.5 tryptophan synthase subunit alpha compare
PS417_23375 -1.6 -2.3 cytochrome C oxidase compare
PS417_06370 -1.6 -1.6 cold-shock protein compare
PS417_04500 -1.6 -2.0 hypothetical protein compare
PS417_20125 -1.6 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_02720 -1.5 -1.1 TetR family transcriptional regulator compare
PS417_21125 -1.5 -6.1 phosphoadenosine phosphosulfate reductase compare
PS417_23370 -1.5 -4.2 protoheme IX farnesyltransferase compare
PS417_00195 -1.5 -2.5 hypothetical protein compare
PS417_20715 -1.5 -1.7 cytochrome Cbb3 compare
PS417_08220 -1.4 -1.2 epimerase compare
PS417_01920 -1.4 -1.0 ATP-dependent protease subunit HslV compare
PS417_21430 -1.3 -1.4 3-oxoacyl-ACP synthase compare
PS417_04390 -1.3 -2.5 toluene tolerance protein compare
PS417_20880 -1.2 -1.2 GntR family transcriptional regulator compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_04365 -1.2 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01030 -1.2 -1.7 glutamine ABC transporter substrate-binding protein compare
PS417_23580 -1.1 -1.5 peptidylprolyl isomerase compare
PS417_21070 -1.1 -2.8 aconitate hydratase compare
PS417_16855 -1.1 -1.9 cation:proton antiporter compare
PS417_28265 -1.0 -2.5 pyridoxamine kinase compare
PS417_07170 -1.0 -2.5 hypothetical protein compare
PS417_04375 -1.0 -1.3 ABC transporter ATP-binding protein compare
PS417_10810 -1.0 -1.6 hypothetical protein compare
PS417_00045 -1.0 -1.6 glycerol acyltransferase compare
PS417_00085 -1.0 -2.0 16S rRNA methyltransferase compare
PS417_13490 -0.9 -1.7 hypothetical protein compare
PS417_00345 -0.9 -1.4 copper-binding protein compare
PS417_24620 -0.9 -1.5 hypothetical protein compare
PS417_15540 -0.9 -1.3 NUDIX hydrolase compare
PS417_22870 -0.9 -1.8 lipoprotein compare
PS417_02485 -0.9 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02225 -0.9 -2.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_12015 -0.9 -1.7 phosphoglycerate mutase compare
PS417_23205 -0.9 -1.3 transcriptional regulator compare
PS417_22445 -0.9 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_22210 -0.9 -1.4 AraC family transcriptional regulator compare
PS417_02630 -0.9 -1.4 NAD synthetase compare
PS417_04595 -0.9 -1.7 cell division protein MraZ compare
PS417_04960 -0.9 -1.6 hypothetical protein compare
PS417_24705 -0.9 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_01580 -0.8 -1.2 imidazole glycerol phosphate synthase compare
PS417_01950 -0.8 -4.6 malate dehydrogenase compare
PS417_20520 -0.8 -1.9 3-phosphoglycerate kinase compare
PS417_01915 -0.8 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04985 -0.8 -2.8 ketosteroid isomerase compare
PS417_07620 -0.8 -1.6 beta-hexosaminidase compare
PS417_28275 -0.8 -2.3 cobalamin biosynthesis protein CobW compare
PS417_18945 -0.8 -2.5 endoribonuclease compare
PS417_27520 -0.8 -2.7 uroporphyrin-III methyltransferase compare
PS417_22315 -0.8 -2.1 DNA-3-methyladenine glycosylase compare
PS417_23025 -0.8 -3.0 murein transglycosylase compare
PS417_17890 -0.8 -2.2 3-oxoacyl-ACP reductase compare
PS417_26655 -0.8 -2.8 chemotaxis protein compare
PS417_28280 -0.8 -2.3 hypothetical protein compare
PS417_24590 -0.8 -2.1 acyl-CoA dehydrogenase compare
PS417_12245 -0.8 -2.0 GNAT family acetyltransferase compare
PS417_22350 -0.8 -1.6 Fis family transcriptional regulator compare
PS417_08515 -0.8 -1.8 hypothetical protein compare
PS417_25915 -0.8 -1.8 carbon-nitrogen hydrolase compare
PS417_18560 -0.8 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_09020 -0.8 -2.5 esterase compare
PS417_15100 -0.8 -1.6 BatB protein compare
PS417_15305 -0.8 -1.6 type VI secretion protein compare
PS417_09125 -0.7 -2.8 (Fe-S)-binding protein compare
PS417_22130 -0.7 -2.3 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_17565 -0.7 -2.0 branched-chain amino acid aminotransferase compare
PS417_26730 -0.7 -0.5 pyrroline-5-carboxylate reductase compare
PS417_10715 -0.7 -1.5 Cro/Cl family transcriptional regulator compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_05040 -0.7 -2.6 amino acid dehydrogenase compare
PS417_06375 -0.7 -0.6 deoxycytidine triphosphate deaminase compare
PS417_02805 -0.7 -1.1 urease subunit gamma compare
PS417_28230 -0.7 -1.7 transcriptional regulator compare
PS417_18545 -0.7 -2.1 cell division protein compare
PS417_23775 -0.7 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_13205 -0.7 -1.4 isochorismate-pyruvate lyase compare
PS417_06245 -0.7 -1.3 zinc metallopeptidase RseP compare
PS417_10265 -0.7 -1.4 peptidase compare
PS417_25720 -0.7 -2.4 anthranilate synthase component II compare
PS417_10015 -0.7 -0.8 hypothetical protein compare
PS417_23475 -0.7 -1.1 hypothetical protein compare
PS417_24650 -0.7 -1.2 membrane protein compare
PS417_08225 -0.7 -2.1 acetolactate synthase compare
PS417_23705 -0.7 -2.3 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_18150 -0.7 -1.9 chemotaxis protein CheY compare
PS417_06680 -0.7 -2.9 nuclease PIN compare
PS417_12660 -0.7 -1.0 hypothetical protein compare
PS417_13985 -0.7 -2.6 dehydrogenase compare
PS417_26695 -0.7 -1.0 uracil phosphoribosyltransferase compare
PS417_11775 -0.7 -1.5 acetoin dehydrogenase compare
PS417_01405 -0.7 -1.9 sugar transporter compare
PS417_11945 -0.7 -1.0 hypothetical protein compare
PS417_24560 -0.7 -1.9 ferrous iron transporter compare
PS417_20705 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_10445 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_23615 -0.6 -1.3 sulfate transporter compare
PS417_07700 -0.6 -1.1 chromosome partitioning protein ParA compare
PS417_14590 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_20875 -0.6 -1.3 chromosome segregation protein SMC compare
PS417_15090 -0.6 -1.0 hypothetical protein compare
PS417_13255 -0.6 -1.5 ABC transporter compare
PS417_26850 -0.6 -0.6 twin-arginine translocation pathway signal protein compare
PS417_23095 -0.6 -0.7 exodeoxyribonuclease compare
PS417_02270 -0.6 -2.2 carbamoyltransferase compare
PS417_28225 -0.6 -0.9 hypothetical protein compare
PS417_23250 -0.6 -3.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_06780 -0.6 -1.4 TetR family transcriptional regulator compare
PS417_17680 -0.6 -1.5 ABC transporter compare
PS417_15180 -0.6 -3.0 acyl dehydratase compare
PS417_10535 -0.6 -1.8 hypothetical protein compare
PS417_12595 -0.6 -1.1 transcriptional regulator compare
PS417_23825 -0.6 -2.7 penicillin-binding protein compare
PS417_17000 -0.6 -0.9 MerR family transcriptional regulator compare
PS417_27005 -0.6 -0.7 membrane protein compare
PS417_00185 -0.6 -1.6 tryptophan synthase subunit beta compare
PS417_27245 -0.6 -1.8 aminotransferase DegT compare
PS417_19835 -0.6 -1.1 flagellar biosynthesis protein FliS compare
PS417_17685 -0.6 -1.7 allantoate amidohydrolase compare
PS417_25390 -0.6 -1.8 MFS transporter compare
PS417_27135 -0.6 -0.4 glutamine synthetase compare
PS417_26335 -0.6 -1.0 BetI family transcriptional regulator compare
PS417_19275 -0.6 -0.8 hypothetical protein compare
PS417_17155 -0.6 -1.7 cytochrome B561 compare
PS417_08315 -0.6 -2.0 hypothetical protein compare
PS417_18930 -0.6 -1.1 restriction endonuclease subunit S compare
PS417_12935 -0.6 -1.4 RNA polymerase sigma factor compare
PS417_14980 -0.6 -0.6 universal stress protein UspA compare
PS417_08350 -0.6 -1.4 preprotein translocase subunit TatD compare
PS417_05560 -0.6 -1.3 ABC transporter compare
PS417_27115 -0.6 -2.7 putrescine ABC transporter, ATPase component (from data) compare
PS417_17190 -0.6 -1.7 MarR family transcriptional regulator compare
PS417_19605 -0.6 -0.6 hypothetical protein compare
PS417_25815 -0.6 -1.5 magnesium transporter ApaG compare
PS417_14915 -0.6 -1.3 host specificity protein compare
PS417_04055 -0.6 -1.9 peptide transporter compare
PS417_15470 -0.6 -1.7 saccharopine dehydrogenase compare
PS417_08135 -0.6 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15480 -0.6 -0.9 ABC transporter substrate-binding protein compare
PS417_03725 -0.6 -2.1 acyltransferase compare
PS417_21000 -0.6 -1.0 CrfX protein compare
PS417_21760 -0.6 -1.1 hypothetical protein compare
PS417_08030 -0.6 -1.8 transcriptional regulator compare
PS417_05785 -0.6 -1.7 tail protein compare
PS417_19625 -0.6 -1.7 histidine kinase compare
PS417_13140 -0.6 -0.9 oxidoreductase compare
PS417_14755 -0.6 -1.1 UV damage repair endonuclease UvdE compare
PS417_18530 -0.6 -2.4 O-succinylhomoserine sulfhydrylase compare
PS417_19430 -0.5 -1.4 ureidoglycolate hydrolase compare
PS417_09580 -0.5 -1.3 tyrosyl-trna synthetase compare
PS417_19610 -0.5 -1.3 molybdenum cofactor sulfurase compare
PS417_27595 -0.5 -1.4 recombinase XerC compare
PS417_12200 -0.5 -1.9 microcin ABC transporter permease compare
PS417_21710 -0.5 -1.6 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_11415 -0.5 -1.5 hypothetical protein compare
PS417_09605 -0.5 -0.9 glycosyl transferase compare
PS417_24270 -0.5 -2.0 threonine transporter RhtB compare
PS417_13445 -0.5 -0.9 D-aminopeptidase compare
PS417_01735 -0.5 -1.3 ABC transporter permease compare
PS417_14175 -0.5 -2.2 ArsC family transcriptional regulator compare
PS417_01400 -0.5 -1.1 hypothetical protein compare
PS417_18910 -0.5 -2.7 acetylornithine deacetylase compare
PS417_18915 -0.5 -1.5 hypothetical protein compare
PS417_13895 -0.5 -1.3 chemotaxis protein CheB compare
PS417_16510 -0.5 -1.5 Clp protease ClpX compare
PS417_01490 -0.5 -2.4 ABC transporter permease compare
PS417_24655 -0.5 -2.0 hypothetical protein compare
PS417_00535 -0.5 -1.4 Holliday junction resolvase compare
PS417_06925 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_13010 -0.5 -1.3 alpha/beta hydrolase compare
PS417_02705 -0.5 -1.3 urease accessory protein UreF compare
PS417_10955 -0.5 -1.7 porin compare
PS417_25780 -0.5 -0.9 molecular chaperone DnaJ compare
PS417_15755 -0.5 -2.4 protease compare
PS417_28515 -0.5 -1.1 16S rRNA methyltransferase compare
PS417_01040 -0.5 -2.2 RND transporter compare
PS417_26590 -0.5 -1.7 malonate decarboxylase subunit epsilon compare
PS417_24310 -0.5 -1.2 ankyrin compare
PS417_20340 -0.5 -1.1 hypothetical protein compare
PS417_23330 -0.5 -1.2 hypothetical protein compare
PS417_18435 -0.5 -0.8 hypothetical protein compare
PS417_28150 -0.5 -3.4 acetylpolyamine aminohydrolase compare
PS417_00230 -0.5 -2.6 aminopeptidase compare
PS417_21740 -0.5 -1.6 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_08835 -0.5 -2.4 ABC transporter compare
PS417_13730 -0.5 -1.1 hypothetical protein compare
PS417_06825 -0.5 -0.9 hypothetical protein compare
PS417_23385 -0.5 -2.9 cytochrome o ubiquinol oxidase subunit I compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms