Experiment set18IT038 for Pseudomonas simiae WCS417

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.4 -1.7 deoxycytidine triphosphate deaminase compare
PS417_27795 -3.7 -1.4 orotate phosphoribosyltransferase compare
PS417_08125 -3.2 -1.2 prephenate dehydratase compare
PS417_24705 -2.6 -3.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_18310 -2.3 -2.9 hypothetical protein compare
PS417_04650 -2.1 -1.1 D-alanine--D-alanine ligase compare
PS417_08220 -1.9 -1.6 epimerase compare
PS417_20125 -1.9 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_22850 -1.9 -8.1 virulence factor family protein compare
PS417_27800 -1.8 -1.8 exodeoxyribonuclease III compare
PS417_27195 -1.8 -2.0 N-acetylglutamate synthase compare
PS417_16490 -1.8 -2.0 cell division protein FtsK compare
PS417_00180 -1.6 -2.2 tryptophan synthase subunit alpha compare
PS417_22845 -1.6 -13.4 membrane protein compare
PS417_01145 -1.6 -1.5 taurine transporter ATP-binding subunit compare
PS417_13800 -1.5 -3.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20855 -1.5 -1.4 hypothetical protein compare
PS417_00185 -1.5 -2.9 tryptophan synthase subunit beta compare
PS417_21480 -1.4 -1.5 23S rRNA pseudouridylate synthase compare
PS417_11400 -1.4 -1.7 phosphoglycerate mutase compare
PS417_21125 -1.4 -4.1 phosphoadenosine phosphosulfate reductase compare
PS417_20985 -1.4 -1.3 porin compare
PS417_03455 -1.4 -1.8 type III secretion protein compare
PS417_28070 -1.3 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_17215 -1.3 -2.7 peptidylprolyl isomerase compare
PS417_24370 -1.3 -1.1 (2Fe-2S)-binding protein compare
PS417_01605 -1.3 -1.2 phosphoglycerate mutase compare
PS417_28080 -1.3 -8.1 phosphate ABC transporter permease compare
PS417_00045 -1.2 -2.0 glycerol acyltransferase compare
PS417_06530 -1.2 -2.3 membrane protein compare
PS417_22565 -1.2 -0.9 formyltetrahydrofolate deformylase compare
PS417_05975 -1.2 -1.0 chemotaxis protein CheW compare
PS417_09245 -1.2 -1.9 recombinase RdgC compare
PS417_21515 -1.2 -7.0 transcriptional regulator compare
PS417_08205 -1.2 -2.3 acetyltransferase compare
PS417_13795 -1.2 -4.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07170 -1.1 -3.8 hypothetical protein compare
PS417_02475 -1.1 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_20785 -1.1 -2.8 transcriptional regulator compare
PS417_10985 -1.1 -1.4 NADH:flavin oxidoreductase compare
PS417_14065 -1.1 -7.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08185 -1.1 -3.4 glycosyl transferase compare
PS417_04275 -1.1 -7.7 hypothetical protein compare
PS417_18545 -1.1 -3.0 cell division protein compare
PS417_22840 -1.1 -1.5 tRNA-Met compare
PS417_22445 -1.1 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_20025 -1.1 -1.9 alpha-ribazole phosphatase compare
PS417_13805 -1.1 -6.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_27870 -1.1 -3.1 ATP-dependent DNA helicase RecG compare
PS417_20130 -1.0 -6.8 dehydrogenase compare
PS417_04050 -1.0 -2.2 peptide ABC transporter ATP-binding protein compare
PS417_20160 -1.0 -2.7 cysteine synthase compare
PS417_27040 -1.0 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_26990 -1.0 -0.9 RNA pyrophosphohydrolase compare
PS417_07565 -1.0 -1.3 hypothetical protein compare
PS417_27245 -1.0 -3.6 aminotransferase DegT compare
PS417_00370 -1.0 -1.0 hypothetical protein compare
PS417_05570 -1.0 -2.9 DeoR faimly transcriptional regulator compare
PS417_10425 -1.0 -2.1 hypothetical protein compare
PS417_08090 -1.0 -0.8 3-oxoacyl-ACP reductase compare
PS417_04595 -1.0 -2.1 cell division protein MraZ compare
PS417_14655 -0.9 -1.3 lysine transporter LysE compare
PS417_17305 -0.9 -1.7 hypothetical protein compare
PS417_00900 -0.9 -2.3 4-aminobutyrate aminotransferase compare
PS417_26695 -0.9 -1.4 uracil phosphoribosyltransferase compare
PS417_13820 -0.9 -3.0 UDP-glucose 6-dehydrogenase compare
PS417_27595 -0.9 -2.5 recombinase XerC compare
PS417_22780 -0.9 -2.6 XRE family transcriptional regulator compare
PS417_26600 -0.9 -2.8 malonate decarboxylase subunit gamma compare
PS417_19955 -0.9 -1.5 hypothetical protein compare
PS417_13790 -0.9 -3.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_04500 -0.9 -1.6 hypothetical protein compare
PS417_15480 -0.8 -1.7 ABC transporter substrate-binding protein compare
PS417_18370 -0.8 -2.5 hypothetical protein compare
PS417_24525 -0.8 -1.4 nuclease compare
PS417_22570 -0.8 -0.9 H-NS histone compare
PS417_28515 -0.8 -2.3 16S rRNA methyltransferase compare
PS417_18360 -0.8 -1.4 hypothetical protein compare
PS417_04305 -0.8 -1.4 aspartate ammonia-lyase compare
PS417_03260 -0.8 -1.2 5S ribosomal RNA compare
PS417_03320 -0.8 -4.5 hypothetical protein compare
PS417_05830 -0.8 -2.2 hypothetical protein compare
PS417_12030 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_04475 -0.8 -2.3 hypothetical protein compare
PS417_01425 -0.8 -2.4 AraC family transcriptional regulator compare
PS417_17120 -0.8 -2.9 protein kinase compare
PS417_28075 -0.8 -3.4 phosphate ABC transporter permease compare
PS417_10405 -0.8 -1.2 filamentous hemagglutinin compare
PS417_05510 -0.8 -3.4 alpha/beta hydrolase compare
PS417_14075 -0.8 -1.6 hypothetical protein compare
PS417_20650 -0.8 -4.9 hypothetical protein compare
PS417_18560 -0.8 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_10715 -0.7 -1.5 Cro/Cl family transcriptional regulator compare
PS417_17000 -0.7 -1.2 MerR family transcriptional regulator compare
PS417_01950 -0.7 -3.4 malate dehydrogenase compare
PS417_02485 -0.7 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_17050 -0.7 -2.2 transcriptional regulator compare
PS417_23475 -0.7 -1.3 hypothetical protein compare
PS417_19650 -0.7 -2.3 chemotaxis protein CheW compare
PS417_24615 -0.7 -1.0 hypothetical protein compare
PS417_12515 -0.7 -1.4 lactate dehydrogenase compare
PS417_12290 -0.7 -4.1 sulfite reductase compare
PS417_08685 -0.7 -1.1 flagellar hook-length control protein FliK compare
PS417_26985 -0.7 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04390 -0.7 -1.8 toluene tolerance protein compare
PS417_27155 -0.7 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_07710 -0.7 -2.3 membrane protein compare
PS417_08190 -0.7 -5.4 membrane protein compare
PS417_08195 -0.7 -3.7 hypothetical protein compare
PS417_22350 -0.7 -1.6 Fis family transcriptional regulator compare
PS417_27300 -0.7 -0.7 cell division protein ZapA compare
PS417_00445 -0.7 -4.2 histidine kinase compare
PS417_27340 -0.7 -2.4 NADPH:quinone oxidoreductase compare
PS417_01920 -0.7 -0.7 ATP-dependent protease subunit HslV compare
PS417_12220 -0.7 -3.0 hydroxyacylglutathione hydrolase compare
PS417_23160 -0.7 -3.4 50S rRNA methyltransferase compare
PS417_27475 -0.7 -1.6 membrane protein compare
PS417_27520 -0.7 -1.4 uroporphyrin-III methyltransferase compare
PS417_01600 -0.7 -2.5 peptidase M23 compare
PS417_08835 -0.7 -2.7 ABC transporter compare
PS417_10040 -0.7 -0.8 MFS transporter compare
PS417_27635 -0.6 -2.1 magnesium chelatase compare
PS417_18540 -0.6 -1.7 colicin V production CvpA compare
PS417_15135 -0.6 -1.0 hypothetical protein compare
PS417_22535 -0.6 -2.8 ornithine acetyltransferase compare
PS417_22895 -0.6 -3.8 tyrosine recombinase XerD compare
PS417_13945 -0.6 -3.5 GNAT family acetyltransferase compare
PS417_10720 -0.6 -4.5 chemotaxis protein CheY compare
PS417_22300 -0.6 -1.1 LTXXQ domain protein compare
PS417_07165 -0.6 -2.5 dihydrodipicolinate synthase compare
PS417_27640 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_00650 -0.6 -0.5 LysR family transcriptional regulator compare
PS417_25650 -0.6 -2.0 anhydro-N-acetylmuramic acid kinase compare
PS417_16965 -0.6 -3.0 hypothetical protein compare
PS417_15110 -0.6 -2.4 protein BatD compare
PS417_25720 -0.6 -2.5 anthranilate synthase component II compare
PS417_18860 -0.6 -2.5 transcriptional regulator compare
PS417_21855 -0.6 -1.7 hypothetical protein compare
PS417_25765 -0.6 -1.4 transcriptional regulator compare
PS417_00975 -0.6 -1.1 hypothetical protein compare
PS417_12020 -0.6 -2.8 peptidase compare
PS417_19065 -0.6 -0.8 monooxygenase compare
PS417_15125 -0.6 -1.2 glutathione S-transferase compare
PS417_00590 -0.6 -1.2 5S ribosomal RNA compare
PS417_26230 -0.6 -2.3 electron transfer flavoprotein subunit alpha compare
PS417_05165 -0.6 -1.1 cytosol aminopeptidase compare
PS417_05160 -0.6 -0.5 DNA polymerase III subunit chi compare
PS417_27515 -0.6 -2.4 heme biosynthesis protein HemY compare
PS417_23825 -0.6 -2.7 penicillin-binding protein compare
PS417_20030 -0.6 -1.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01560 -0.6 -0.9 imidazoleglycerol-phosphate dehydratase compare
PS417_15235 -0.6 -1.8 short-chain dehydrogenase compare
PS417_22960 -0.6 -2.6 hypothetical protein compare
PS417_05615 -0.6 -1.6 (2Fe-2S)-binding protein compare
PS417_27445 -0.6 -3.7 membrane protein compare
PS417_03465 -0.6 -1.1 type III secretion protein compare
PS417_00550 -0.6 -0.7 hypothetical protein compare
PS417_07120 -0.6 -2.5 RNA polymerase sigma-H factor compare
PS417_16465 -0.6 -3.9 sirohydrochlorin ferrochelatase compare
PS417_22575 -0.6 -3.9 exonuclease I compare
PS417_07465 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_14200 -0.6 -1.7 hypothetical protein compare
PS417_22050 -0.6 -2.2 ribonuclease BN compare
PS417_24085 -0.6 -1.6 protein RnfH compare
PS417_24630 -0.6 -2.2 ATP-binding protein compare
PS417_07640 -0.6 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19285 -0.5 -0.9 ankyrin compare
PS417_08540 -0.5 -1.4 RNA helicase compare
PS417_25055 -0.5 -1.6 transposase compare
PS417_28265 -0.5 -1.2 pyridoxamine kinase compare
PS417_13825 -0.5 -3.9 glycosyltransferase compare
PS417_18420 -0.5 -1.5 deoxyribonuclease compare
PS417_03000 -0.5 -2.7 translation initiation factor Sui1 compare
PS417_18765 -0.5 -2.5 hypothetical protein compare
PS417_02000 -0.5 -3.7 glutamate synthase compare
PS417_27075 -0.5 -1.4 thiol-disulfide isomerase compare
PS417_26420 -0.5 -1.0 hypothetical protein compare
PS417_26515 -0.5 -2.5 hypothetical protein compare
PS417_08410 -0.5 -0.9 hypothetical protein compare
PS417_01965 -0.5 -0.9 fimbriae biosynthesis protein compare
PS417_17285 -0.5 -3.1 hypothetical protein compare
PS417_09615 -0.5 -2.0 glycosyl transferase family 1 compare
PS417_02815 -0.5 -2.1 urea ABC transporter ATP-binding protein compare
PS417_05885 -0.5 -1.9 potassium transporter Kup compare
PS417_02160 -0.5 -0.7 hypothetical protein compare
PS417_09930 -0.5 -0.8 hypothetical protein compare
PS417_09200 -0.5 -2.0 ABC transporter compare
PS417_27100 -0.5 -1.5 phosphohydrolase compare
PS417_28190 -0.5 -1.8 amino acid ABC transporter substrate-binding protein compare
PS417_24835 -0.5 -2.4 hypothetical protein compare
PS417_17390 -0.5 -1.9 DSBA oxidoreductase compare
PS417_25315 -0.5 -1.8 membrane protein compare
PS417_24570 -0.5 -1.5 AsnC family transcriptional regulator compare
PS417_12105 -0.5 -3.0 ABC transporter permease compare
PS417_25780 -0.5 -1.1 molecular chaperone DnaJ compare
PS417_16320 -0.5 -1.1 protein tyrosine phosphatase compare
PS417_07950 -0.5 -1.7 MFS transporter compare
PS417_00535 -0.5 -1.2 Holliday junction resolvase compare
PS417_27535 -0.5 -2.4 chemotaxis protein CheY compare
PS417_05590 -0.5 -2.8 iron ABC transporter ATP-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms