Experiment set18IT037 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_22850 -3.8 -10.3 virulence factor family protein compare
PS417_14065 -3.5 -8.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22845 -3.4 -21.2 membrane protein conserved
PS417_08125 -3.4 -1.2 prephenate dehydratase compare
PS417_13820 -3.3 -11.2 UDP-glucose 6-dehydrogenase compare
PS417_13800 -3.3 -4.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_01915 -3.2 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04275 -3.0 -14.5 hypothetical protein compare
PS417_03310 -2.9 -8.6 carbonate dehydratase compare
PS417_13795 -2.7 -6.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13805 -2.6 -8.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_18310 -2.6 -2.7 hypothetical protein compare
PS417_13790 -2.5 -5.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_02485 -2.5 -4.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01795 -2.5 -13.4 glucosyltransferase MdoH compare
PS417_27245 -2.4 -4.0 aminotransferase DegT compare
PS417_27800 -2.3 -1.5 exodeoxyribonuclease III compare
PS417_23385 -2.2 -7.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_04585 -2.2 -2.6 hypothetical protein compare
PS417_23025 -2.1 -7.3 murein transglycosylase compare
PS417_25720 -2.1 -7.6 anthranilate synthase component II compare
PS417_20985 -2.1 -1.4 porin compare
PS417_27445 -2.1 -9.4 membrane protein compare
PS417_00180 -2.1 -4.1 tryptophan synthase subunit alpha compare
PS417_21515 -2.1 -8.7 transcriptional regulator compare
PS417_24530 -2.0 -5.4 ABC transporter substrate-binding protein compare
PS417_18560 -2.0 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00045 -2.0 -2.7 glycerol acyltransferase compare
PS417_21125 -2.0 -6.6 phosphoadenosine phosphosulfate reductase compare
PS417_05885 -1.9 -7.8 potassium transporter Kup compare
PS417_23375 -1.9 -2.3 cytochrome C oxidase compare
PS417_04380 -1.9 -1.5 ABC transporter permease compare
PS417_27195 -1.8 -2.2 N-acetylglutamate synthase compare
PS417_23380 -1.8 -3.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_06375 -1.8 -1.3 deoxycytidine triphosphate deaminase compare
PS417_25715 -1.8 -6.3 anthranilate phosphoribosyltransferase compare
PS417_23370 -1.8 -4.5 protoheme IX farnesyltransferase compare
PS417_24710 -1.7 -9.1 lipoprotein compare
PS417_24705 -1.7 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_06530 -1.7 -3.1 membrane protein compare
PS417_20160 -1.7 -6.0 cysteine synthase compare
PS417_25725 -1.7 -11.3 anthranilate synthase component I compare
PS417_01790 -1.7 -6.3 glucan biosynthesis protein G compare
PS417_16490 -1.6 -1.8 cell division protein FtsK compare
PS417_11820 -1.6 -5.2 histidine kinase compare
PS417_02475 -1.6 -3.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_27040 -1.6 -4.4 3-phosphoglycerate dehydrogenase compare
PS417_09200 -1.6 -4.1 ABC transporter compare
PS417_05510 -1.6 -5.4 alpha/beta hydrolase compare
PS417_08155 -1.5 -1.6 integration host factor subunit beta compare
PS417_04755 -1.5 -6.6 membrane protein compare
PS417_01920 -1.5 -1.2 ATP-dependent protease subunit HslV compare
PS417_23545 -1.5 -2.1 gamma-glutamyl kinase compare
PS417_09325 -1.5 -3.8 peptidase S41 compare
PS417_04745 -1.5 -5.7 fusaric acid resistance protein compare
PS417_27585 -1.5 -1.7 diaminopimelate epimerase compare
PS417_26985 -1.4 -7.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18545 -1.4 -3.4 cell division protein compare
PS417_24935 -1.4 -1.5 hypothetical protein compare
PS417_17285 -1.4 -7.3 hypothetical protein compare
PS417_07820 -1.3 -3.3 transposase compare
PS417_04735 -1.3 -7.0 LysR family transcriptional regulator compare
PS417_07140 -1.3 -4.2 peptidase M48 compare
PS417_04740 -1.3 -7.1 RND transporter compare
PS417_17215 -1.3 -2.8 peptidylprolyl isomerase compare
PS417_27870 -1.3 -3.5 ATP-dependent DNA helicase RecG compare
PS417_05505 -1.3 -5.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_04595 -1.3 -2.6 cell division protein MraZ compare
PS417_27795 -1.3 -0.9 orotate phosphoribosyltransferase compare
PS417_06245 -1.3 -2.0 zinc metallopeptidase RseP compare
PS417_24745 -1.2 -3.7 gamma-glutamyl phosphate reductase compare
PS417_27300 -1.2 -1.1 cell division protein ZapA compare
PS417_06540 -1.2 -1.6 membrane protein compare
PS417_07170 -1.2 -3.5 hypothetical protein compare
PS417_09205 -1.2 -6.3 membrane protein compare
PS417_05520 -1.2 -5.7 histidine kinase compare
PS417_23390 -1.2 -5.5 ubiquinol oxidase subunit II compare
PS417_15110 -1.2 -4.1 protein BatD compare
PS417_22795 -1.2 -1.7 exclusion suppressor FxsA compare
PS417_17290 -1.2 -5.8 RND transporter compare
PS417_16465 -1.2 -6.3 sirohydrochlorin ferrochelatase compare
PS417_04590 -1.2 -3.4 methyltransferase compare
PS417_07710 -1.2 -4.5 membrane protein compare
PS417_01600 -1.2 -3.9 peptidase M23 compare
PS417_23915 -1.1 -3.7 pantoate--beta-alanine ligase compare
PS417_11825 -1.1 -3.3 transcriptional regulator compare
PS417_03300 -1.1 -3.6 alanine acetyltransferase compare
PS417_25710 -1.1 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_21430 -1.1 -1.7 3-oxoacyl-ACP synthase compare
PS417_20775 -1.1 -3.4 coproporphyrinogen III oxidase compare
PS417_22565 -1.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_22840 -1.1 -2.2 tRNA-Met compare
PS417_26715 -1.1 -3.1 peptidase P60 compare
PS417_01955 -1.1 -6.6 peptidase compare
PS417_05595 -1.0 -7.3 ornithine carbamoyltransferase compare
PS417_17295 -1.0 -4.5 RND transporter MFP subunit compare
PS417_06780 -1.0 -2.8 TetR family transcriptional regulator compare
PS417_08420 -1.0 -4.6 lipoprotein compare
PS417_00185 -1.0 -2.1 tryptophan synthase subunit beta compare
PS417_00475 -1.0 -4.0 membrane protein compare
PS417_15095 -1.0 -2.1 hypothetical protein compare
PS417_08415 -1.0 -6.1 hypothetical protein compare
PS417_02630 -1.0 -2.3 NAD synthetase compare
PS417_23820 -1.0 -4.1 hypothetical protein compare
PS417_23825 -1.0 -4.6 penicillin-binding protein compare
PS417_28515 -1.0 -3.2 16S rRNA methyltransferase compare
PS417_04475 -1.0 -2.8 hypothetical protein compare
PS417_05475 -1.0 -2.8 arginase compare
PS417_26800 -0.9 -4.2 cell division protein FtsX compare
PS417_02555 -0.9 -6.0 exoribonuclease R compare
PS417_05500 -0.9 -2.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_15090 -0.9 -1.8 hypothetical protein compare
PS417_01850 -0.9 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12015 -0.9 -2.8 phosphoglycerate mutase compare
PS417_05830 -0.9 -3.2 hypothetical protein compare
PS417_04750 -0.9 -4.0 hypothetical protein compare
PS417_05515 -0.9 -5.6 hypothetical protein compare
PS417_02495 -0.9 -3.4 GTPase HflX compare
PS417_13855 -0.9 -1.2 acetyl-CoA acetyltransferase compare
PS417_16195 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_08835 -0.9 -4.3 ABC transporter compare
PS417_07120 -0.9 -4.0 RNA polymerase sigma-H factor compare
PS417_15105 -0.8 -4.1 membrane protein compare
PS417_02270 -0.8 -2.9 carbamoyltransferase compare
PS417_26805 -0.8 -1.0 cell division protein FtsE compare
PS417_23105 -0.8 -1.4 hypothetical protein compare
PS417_12290 -0.8 -4.9 sulfite reductase compare
PS417_17980 -0.8 -1.2 ABC transporter permease compare
PS417_22445 -0.8 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_26070 -0.8 -2.8 amino acid ABC transporter substrate-binding protein compare
PS417_10995 -0.8 -1.9 GntR family transcriptional regulator compare
PS417_18780 -0.8 -1.3 flavin reductase compare
PS417_11175 -0.8 -2.1 AraC family transcriptional regulator compare
PS417_26770 -0.8 -1.3 tRNA (guanine-N7)-methyltransferase compare
PS417_22450 -0.8 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_02225 -0.8 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_28225 -0.8 -1.3 hypothetical protein compare
PS417_26420 -0.8 -1.4 hypothetical protein compare
PS417_02990 -0.8 -1.8 hypothetical protein compare
PS417_02880 -0.8 -1.1 copper chaperone compare
PS417_13190 -0.8 -4.7 transporter compare
PS417_10720 -0.8 -3.9 chemotaxis protein CheY compare
PS417_06770 -0.8 -3.7 multidrug transporter compare
PS417_09150 -0.8 -1.7 energy transducer TonB compare
PS417_17000 -0.8 -1.5 MerR family transcriptional regulator compare
PS417_20140 -0.8 -2.3 nucleoprotein/polynucleotide-associated enzyme compare
PS417_23205 -0.8 -3.6 transcriptional regulator compare
PS417_17835 -0.7 -2.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_25275 -0.7 -2.6 hypothetical protein compare
PS417_15200 -0.7 -2.4 protein activator of alkane oxidation PraB compare
PS417_01580 -0.7 -1.2 imidazole glycerol phosphate synthase compare
PS417_22810 -0.7 -2.1 DNA base-flipping protein YbaZ compare
PS417_07755 -0.7 -4.8 hypothetical protein compare
PS417_06860 -0.7 -3.1 methyltransferase compare
PS417_25295 -0.7 -1.7 hypothetical protein compare
PS417_03455 -0.7 -1.0 type III secretion protein compare
PS417_05525 -0.7 -2.9 Fis family transcriptional regulator compare
PS417_03495 -0.7 -2.1 type III secretory protein EscS compare
PS417_27205 -0.7 -2.6 adenylate cyclase compare
PS417_18540 -0.7 -2.7 colicin V production CvpA compare
PS417_26835 -0.7 -1.3 3-mercaptopyruvate sulfurtransferase compare
PS417_18420 -0.7 -2.0 deoxyribonuclease compare
PS417_22050 -0.7 -2.6 ribonuclease BN compare
PS417_16370 -0.7 -2.8 chemotaxis protein CheY compare
PS417_07375 -0.7 -4.1 ribonuclease D compare
PS417_04305 -0.7 -1.0 aspartate ammonia-lyase compare
PS417_04270 -0.7 -4.4 ribonuclease G compare
PS417_17240 -0.7 -2.0 trigger factor compare
PS417_14710 -0.7 -1.3 isochorismatase compare
PS417_18370 -0.7 -1.7 hypothetical protein compare
PS417_22300 -0.7 -1.2 LTXXQ domain protein compare
PS417_26645 -0.7 -1.8 chemotaxis protein compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_06095 -0.7 -1.4 energy transducer TonB compare
PS417_26815 -0.7 -1.7 peptidase M16 compare
PS417_06125 -0.7 -2.3 hypothetical protein compare
PS417_27520 -0.6 -1.5 uroporphyrin-III methyltransferase compare
PS417_02870 -0.6 -3.8 TonB-dependent receptor compare
PS417_25390 -0.6 -2.1 MFS transporter compare
PS417_00065 -0.6 -1.2 3-methyladenine DNA glycosylase compare
PS417_22350 -0.6 -1.6 Fis family transcriptional regulator compare
PS417_12120 -0.6 -2.5 IclR family transcriptional regulator compare
PS417_19520 -0.6 -1.5 transcriptional regulator compare
PS417_20025 -0.6 -1.2 alpha-ribazole phosphatase compare
PS417_09475 -0.6 -2.0 class V aminotransferase compare
PS417_23160 -0.6 -3.4 50S rRNA methyltransferase compare
PS417_00660 -0.6 -2.1 DSBA oxidoreductase compare
PS417_08655 -0.6 -3.9 pseudouridine synthase compare
PS417_10010 -0.6 -2.6 Replication protein P compare
PS417_12695 -0.6 -3.2 mannitol dehydrogenase compare
PS417_12755 -0.6 -1.9 RND transporter compare
PS417_02510 -0.6 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_17300 -0.6 -3.0 RND transporter compare
PS417_06525 -0.6 -2.4 beta-lactamase compare
PS417_23995 -0.6 -0.6 preprotein translocase subunit SecG compare
PS417_23250 -0.6 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_13785 -0.6 -2.2 hypothetical protein compare
PS417_14590 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_22260 -0.6 -1.9 segregation and condensation protein B compare
PS417_25315 -0.6 -2.4 membrane protein compare


Specific Phenotypes

For 11 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms