Experiment set18IT037 for Pseudomonas putida KT2440
Growth at 25C
Group: temperatureMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Ammonium chloride (10 mM)
Culturing: Putida_ML5_PNNL, 24-well transparent microplate; Multitron, Aerobic, at 25 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 5 genes in this experiment
For temperature D-Glucose in Pseudomonas putida KT2440
For temperature D-Glucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Ascorbate and aldarate metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| UDP-α-D-glucuronate biosynthesis (from UDP-glucose) | 1 | 1 | 1 |
| UDP-α-D-xylose biosynthesis | 2 | 1 | 1 |
| superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis | 6 | 4 | 1 |
| UDP-sugars interconversion | 9 | 2 | 1 |
| teichuronic acid biosynthesis (B. subtilis 168) | 9 | 2 | 1 |
| colanic acid building blocks biosynthesis | 11 | 9 | 1 |