Experiment set18IT036 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_00180 -4.6 -3.1 tryptophan synthase subunit alpha compare
PS417_14065 -4.4 -10.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22450 -3.9 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_27795 -3.7 -1.5 orotate phosphoribosyltransferase compare
PS417_13800 -3.6 -3.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18310 -3.3 -2.0 hypothetical protein compare
PS417_27300 -2.9 -1.6 cell division protein ZapA compare
PS417_22845 -2.8 -18.3 membrane protein conserved
PS417_06530 -2.8 -2.7 membrane protein compare
PS417_13795 -2.8 -9.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_24530 -2.8 -4.3 ABC transporter substrate-binding protein compare
PS417_13820 -2.8 -9.1 UDP-glucose 6-dehydrogenase compare
PS417_02280 -2.6 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_27245 -2.6 -5.2 aminotransferase DegT compare
PS417_22850 -2.5 -9.9 virulence factor family protein compare
PS417_00045 -2.3 -2.6 glycerol acyltransferase compare
PS417_03310 -2.3 -8.6 carbonate dehydratase compare
PS417_23375 -2.3 -3.1 cytochrome C oxidase compare
PS417_02485 -2.3 -5.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13790 -2.3 -5.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_18560 -2.2 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_05510 -2.2 -4.9 alpha/beta hydrolase compare
PS417_21125 -2.0 -8.9 phosphoadenosine phosphosulfate reductase compare
PS417_01605 -2.0 -1.4 phosphoglycerate mutase compare
PS417_13805 -2.0 -8.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_00185 -2.0 -4.3 tryptophan synthase subunit beta compare
PS417_04275 -1.9 -10.9 hypothetical protein compare
PS417_07170 -1.9 -4.4 hypothetical protein compare
PS417_11825 -1.9 -2.7 transcriptional regulator compare
PS417_04735 -1.9 -7.5 LysR family transcriptional regulator compare
PS417_05505 -1.9 -8.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_23385 -1.8 -8.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_05885 -1.8 -7.9 potassium transporter Kup compare
PS417_03380 -1.8 -2.0 hypothetical protein compare
PS417_04740 -1.8 -8.5 RND transporter compare
PS417_27800 -1.8 -1.7 exodeoxyribonuclease III compare
PS417_20160 -1.7 -4.4 cysteine synthase compare
PS417_01795 -1.7 -9.8 glucosyltransferase MdoH compare
PS417_25720 -1.7 -5.9 anthranilate synthase component II compare
PS417_22840 -1.7 -2.2 tRNA-Met compare
PS417_23370 -1.7 -5.1 protoheme IX farnesyltransferase compare
PS417_04745 -1.7 -7.2 fusaric acid resistance protein compare
PS417_01790 -1.7 -7.9 glucan biosynthesis protein G compare
PS417_23380 -1.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_01855 -1.7 -3.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_21515 -1.6 -8.2 transcriptional regulator compare
PS417_25725 -1.6 -10.2 anthranilate synthase component I compare
PS417_10985 -1.6 -1.5 NADH:flavin oxidoreductase compare
PS417_08125 -1.6 -0.9 prephenate dehydratase compare
PS417_24705 -1.5 -3.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_04380 -1.5 -1.2 ABC transporter permease compare
PS417_22565 -1.5 -1.0 formyltetrahydrofolate deformylase compare
PS417_05500 -1.5 -3.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_04750 -1.5 -6.0 hypothetical protein compare
PS417_06540 -1.5 -1.8 membrane protein compare
PS417_04595 -1.5 -2.6 cell division protein MraZ compare
PS417_04755 -1.4 -6.4 membrane protein compare
PS417_09325 -1.4 -4.9 peptidase S41 compare
PS417_24615 -1.4 -1.2 hypothetical protein compare
PS417_23820 -1.4 -4.7 hypothetical protein compare
PS417_23775 -1.4 -2.8 exodeoxyribonuclease V subunit beta compare
PS417_18545 -1.3 -3.0 cell division protein compare
PS417_02880 -1.3 -1.6 copper chaperone compare
PS417_23025 -1.3 -4.5 murein transglycosylase compare
PS417_16490 -1.3 -1.9 cell division protein FtsK compare
PS417_01915 -1.3 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15095 -1.3 -3.3 hypothetical protein compare
PS417_21000 -1.3 -2.2 CrfX protein compare
PS417_16465 -1.2 -7.0 sirohydrochlorin ferrochelatase compare
PS417_17290 -1.2 -5.4 RND transporter compare
PS417_00065 -1.2 -1.8 3-methyladenine DNA glycosylase compare
PS417_25715 -1.2 -3.5 anthranilate phosphoribosyltransferase compare
PS417_12290 -1.2 -4.9 sulfite reductase compare
PS417_27445 -1.2 -6.5 membrane protein compare
PS417_27870 -1.2 -3.6 ATP-dependent DNA helicase RecG compare
PS417_05525 -1.2 -4.4 Fis family transcriptional regulator compare
PS417_23390 -1.1 -4.7 ubiquinol oxidase subunit II compare
PS417_20855 -1.1 -1.1 hypothetical protein compare
PS417_16310 -1.1 -3.5 membrane protein compare
PS417_17215 -1.1 -2.3 peptidylprolyl isomerase compare
PS417_12375 -1.1 -2.7 serine/threonine protein phosphatase compare
PS417_26420 -1.1 -2.0 hypothetical protein compare
PS417_27315 -1.1 -1.7 hypothetical protein compare
PS417_15100 -1.1 -2.3 BatB protein compare
PS417_01600 -1.1 -3.4 peptidase M23 compare
PS417_07120 -1.1 -4.9 RNA polymerase sigma-H factor compare
PS417_25710 -1.1 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_28515 -1.0 -2.1 16S rRNA methyltransferase compare
PS417_18355 -1.0 -4.2 DNA-binding protein compare
PS417_15885 -1.0 -1.4 GCN5 family acetyltransferase compare
PS417_08415 -1.0 -7.1 hypothetical protein compare
PS417_11820 -1.0 -2.0 histidine kinase compare
PS417_26985 -1.0 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13205 -1.0 -2.2 isochorismate-pyruvate lyase compare
PS417_08220 -1.0 -1.1 epimerase compare
PS417_04585 -1.0 -1.5 hypothetical protein compare
PS417_01580 -1.0 -1.5 imidazole glycerol phosphate synthase compare
PS417_11770 -1.0 -1.7 pyruvate dehydrogenase compare
PS417_00220 -1.0 -1.7 hypothetical protein compare
PS417_19720 -1.0 -1.9 DNA-binding protein compare
PS417_23825 -1.0 -5.2 penicillin-binding protein compare
PS417_02555 -1.0 -6.3 exoribonuclease R compare
PS417_15085 -1.0 -2.8 ATPase AAA compare
PS417_07710 -1.0 -3.5 membrane protein compare
PS417_15110 -0.9 -6.1 protein BatD compare
PS417_24710 -0.9 -4.9 lipoprotein compare
PS417_28145 -0.9 -1.6 AraC family transcriptional regulator compare
PS417_05520 -0.9 -5.1 histidine kinase compare
PS417_02740 -0.9 -2.1 LysR family transcriptional regulator compare
PS417_27195 -0.9 -1.3 N-acetylglutamate synthase compare
PS417_04375 -0.9 -1.3 ABC transporter ATP-binding protein compare
PS417_27640 -0.9 -1.1 TetR family transcriptional regulator compare
PS417_06205 -0.9 -4.4 methionine aminopeptidase compare
PS417_02870 -0.9 -4.3 TonB-dependent receptor compare
PS417_20775 -0.9 -3.4 coproporphyrinogen III oxidase compare
PS417_05830 -0.9 -2.2 hypothetical protein compare
PS417_17925 -0.9 -2.2 acyl-CoA dehydrogenase compare
PS417_09695 -0.9 -2.0 hydrolase compare
PS417_23170 -0.9 -1.6 FeS assembly protein IscX compare
PS417_08090 -0.9 -0.8 3-oxoacyl-ACP reductase compare
PS417_13870 -0.8 -1.9 hypothetical protein compare
PS417_26800 -0.8 -4.5 cell division protein FtsX compare
PS417_20985 -0.8 -0.9 porin compare
PS417_09205 -0.8 -4.5 membrane protein compare
PS417_24560 -0.8 -2.0 ferrous iron transporter compare
PS417_02510 -0.8 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_14200 -0.8 -1.4 hypothetical protein compare
PS417_22520 -0.8 -0.8 histidine kinase compare
PS417_13190 -0.8 -5.3 transporter compare
PS417_08540 -0.8 -1.8 RNA helicase compare
PS417_04385 -0.8 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_22990 -0.8 -0.8 iron dicitrate transport regulator FecR compare
PS417_08410 -0.8 -1.9 hypothetical protein compare
PS417_11400 -0.8 -0.7 phosphoglycerate mutase compare
PS417_01920 -0.8 -0.8 ATP-dependent protease subunit HslV compare
PS417_07655 -0.8 -1.8 glycerophosphodiester phosphodiesterase compare
PS417_15105 -0.8 -3.9 membrane protein compare
PS417_27155 -0.7 -1.4 aliphatic sulfonates transport ATP-binding subunit compare
PS417_07165 -0.7 -2.5 dihydrodipicolinate synthase compare
PS417_26850 -0.7 -0.7 twin-arginine translocation pathway signal protein compare
PS417_06370 -0.7 -1.3 cold-shock protein compare
PS417_24745 -0.7 -1.2 gamma-glutamyl phosphate reductase compare
PS417_27815 -0.7 -1.2 hypothetical protein compare
PS417_08250 -0.7 -1.2 competence protein ComEA compare
PS417_17285 -0.7 -4.0 hypothetical protein compare
PS417_03300 -0.7 -1.7 alanine acetyltransferase compare
PS417_06245 -0.7 -1.1 zinc metallopeptidase RseP compare
PS417_17140 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_27105 -0.7 -3.2 spermidine/putrescine ABC transporter permease compare
PS417_05445 -0.7 -1.1 DNA mismatch repair protein MutT compare
PS417_08420 -0.7 -2.6 lipoprotein compare
PS417_23105 -0.7 -1.1 hypothetical protein compare
PS417_23155 -0.7 -4.2 pilus assembly protein PilW compare
PS417_16855 -0.7 -1.6 cation:proton antiporter compare
PS417_02495 -0.7 -3.3 GTPase HflX compare
PS417_09420 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_23915 -0.7 -1.6 pantoate--beta-alanine ligase compare
PS417_06825 -0.7 -1.2 hypothetical protein compare
PS417_08620 -0.7 -0.9 hypothetical protein compare
PS417_20125 -0.7 -1.4 phosphoribosylglycinamide formyltransferase compare
PS417_05515 -0.7 -4.1 hypothetical protein compare
PS417_12280 -0.7 -1.2 MerR family transcriptional regulator compare
PS417_13895 -0.7 -1.6 chemotaxis protein CheB compare
PS417_28070 -0.7 -3.2 phosphate ABC transporter ATP-binding protein compare
PS417_07755 -0.6 -4.3 hypothetical protein compare
PS417_19475 -0.6 -3.2 pseudouridine synthase compare
PS417_04270 -0.6 -4.5 ribonuclease G compare
PS417_28265 -0.6 -0.8 pyridoxamine kinase compare
PS417_17240 -0.6 -1.9 trigger factor compare
PS417_07700 -0.6 -1.7 chromosome partitioning protein ParA compare
PS417_17120 -0.6 -2.1 protein kinase compare
PS417_26125 -0.6 -2.8 glutathione S-transferase compare
PS417_18150 -0.6 -2.6 chemotaxis protein CheY compare
PS417_06525 -0.6 -2.9 beta-lactamase compare
PS417_28350 -0.6 -2.5 fatty acid methyltransferase compare
PS417_23770 -0.6 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_07140 -0.6 -1.4 peptidase M48 compare
PS417_19225 -0.6 -3.1 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_09200 -0.6 -2.3 ABC transporter compare
PS417_12660 -0.6 -1.4 hypothetical protein compare
PS417_17455 -0.6 -1.7 cytochrome C compare
PS417_17300 -0.6 -3.6 RND transporter compare
PS417_23205 -0.6 -2.3 transcriptional regulator compare
PS417_26995 -0.6 -3.2 phosphoserine phosphatase compare
PS417_22050 -0.6 -2.2 ribonuclease BN compare
PS417_04220 -0.6 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_17190 -0.6 -1.4 MarR family transcriptional regulator compare
PS417_02770 -0.6 -1.1 membrane protein compare
PS417_11175 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_08320 -0.6 -1.9 metal-chelation protein CHAD compare
PS417_13445 -0.6 -1.4 D-aminopeptidase compare
PS417_17000 -0.6 -1.7 MerR family transcriptional regulator compare
PS417_27515 -0.6 -1.7 heme biosynthesis protein HemY compare
PS417_02805 -0.6 -1.1 urease subunit gamma compare
PS417_20025 -0.6 -0.8 alpha-ribazole phosphatase compare
PS417_20340 -0.6 -1.6 hypothetical protein compare
PS417_01030 -0.6 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_27040 -0.6 -1.4 3-phosphoglycerate dehydrogenase compare
PS417_14655 -0.6 -0.8 lysine transporter LysE compare
PS417_21690 -0.6 -2.6 N-succinylarginine dihydrolase compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms