Experiment set18IT035 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_13800 -4.3 -4.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_14065 -4.0 -9.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_05535 -3.6 -2.9 Fis family transcriptional regulator compare
PS417_00755 -3.6 -1.4 biofilm PGA synthesis protein PgaD compare
PS417_13795 -3.4 -13.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_22850 -3.0 -10.6 virulence factor family protein compare
PS417_01915 -2.9 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27245 -2.8 -4.2 aminotransferase DegT compare
PS417_05510 -2.8 -5.2 alpha/beta hydrolase compare
PS417_23380 -2.8 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_24705 -2.7 -3.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_00185 -2.7 -3.9 tryptophan synthase subunit beta compare
PS417_22845 -2.7 -17.5 membrane protein conserved
PS417_18310 -2.6 -2.5 hypothetical protein compare
PS417_03310 -2.6 -10.0 carbonate dehydratase compare
PS417_18560 -2.5 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_06540 -2.4 -3.0 membrane protein compare
PS417_04380 -2.4 -1.6 ABC transporter permease compare
PS417_13820 -2.3 -9.7 UDP-glucose 6-dehydrogenase compare
PS417_22565 -2.3 -1.3 formyltetrahydrofolate deformylase compare
PS417_21515 -2.3 -10.0 transcriptional regulator compare
PS417_13805 -2.2 -8.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_20160 -2.2 -5.0 cysteine synthase compare
PS417_21125 -2.1 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_27300 -2.1 -1.5 cell division protein ZapA compare
PS417_24530 -2.1 -5.4 ABC transporter substrate-binding protein compare
PS417_21430 -2.1 -2.2 3-oxoacyl-ACP synthase compare
PS417_04595 -2.1 -3.1 cell division protein MraZ compare
PS417_23375 -2.1 -3.0 cytochrome C oxidase compare
PS417_23370 -2.1 -3.6 protoheme IX farnesyltransferase compare
PS417_13790 -2.1 -2.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_02475 -2.1 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_04745 -2.1 -10.1 fusaric acid resistance protein compare
PS417_27795 -2.0 -1.1 orotate phosphoribosyltransferase compare
PS417_01795 -2.0 -12.2 glucosyltransferase MdoH compare
PS417_22840 -2.0 -2.3 tRNA-Met compare
PS417_05885 -2.0 -6.7 potassium transporter Kup compare
PS417_23385 -1.9 -8.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_15095 -1.9 -3.6 hypothetical protein compare
PS417_05505 -1.8 -6.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_00045 -1.8 -2.4 glycerol acyltransferase compare
PS417_04275 -1.8 -11.2 hypothetical protein compare
PS417_27800 -1.8 -1.7 exodeoxyribonuclease III compare
PS417_25710 -1.8 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_23025 -1.8 -6.0 murein transglycosylase compare
PS417_04740 -1.7 -9.8 RND transporter compare
PS417_01600 -1.7 -6.9 peptidase M23 compare
PS417_24935 -1.7 -1.6 hypothetical protein compare
PS417_01790 -1.7 -8.7 glucan biosynthesis protein G compare
PS417_23390 -1.6 -4.5 ubiquinol oxidase subunit II compare
PS417_04735 -1.6 -6.4 LysR family transcriptional regulator compare
PS417_06370 -1.6 -2.1 cold-shock protein compare
PS417_25725 -1.6 -9.6 anthranilate synthase component I compare
PS417_05500 -1.5 -2.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_04475 -1.5 -4.9 hypothetical protein compare
PS417_16715 -1.5 -1.4 DoxX family protein compare
PS417_01560 -1.5 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_25715 -1.5 -3.9 anthranilate phosphoribosyltransferase compare
PS417_17215 -1.5 -2.4 peptidylprolyl isomerase compare
PS417_16490 -1.5 -2.0 cell division protein FtsK compare
PS417_25720 -1.5 -7.9 anthranilate synthase component II compare
PS417_07170 -1.5 -4.8 hypothetical protein compare
PS417_28515 -1.4 -3.0 16S rRNA methyltransferase compare
PS417_04755 -1.4 -5.1 membrane protein compare
PS417_08415 -1.4 -7.6 hypothetical protein compare
PS417_04750 -1.4 -4.4 hypothetical protein compare
PS417_11820 -1.4 -2.4 histidine kinase compare
PS417_23915 -1.4 -3.8 pantoate--beta-alanine ligase compare
PS417_27445 -1.3 -7.1 membrane protein compare
PS417_20985 -1.3 -1.2 porin compare
PS417_05525 -1.3 -3.4 Fis family transcriptional regulator compare
PS417_11825 -1.3 -2.9 transcriptional regulator compare
PS417_16465 -1.3 -6.5 sirohydrochlorin ferrochelatase compare
PS417_20775 -1.3 -2.8 coproporphyrinogen III oxidase compare
PS417_07710 -1.3 -4.3 membrane protein compare
PS417_21850 -1.3 -1.6 LysR family transcriptional regulator compare
PS417_02555 -1.2 -7.9 exoribonuclease R compare
PS417_26800 -1.2 -5.0 cell division protein FtsX compare
PS417_19605 -1.2 -1.6 hypothetical protein compare
PS417_12290 -1.2 -6.1 sulfite reductase compare
PS417_15110 -1.1 -5.5 protein BatD compare
PS417_01920 -1.1 -1.0 ATP-dependent protease subunit HslV compare
PS417_14200 -1.1 -2.5 hypothetical protein compare
PS417_05515 -1.1 -6.6 hypothetical protein compare
PS417_02485 -1.1 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08130 -1.1 -1.8 aspartate aminotransferase compare
PS417_26985 -1.1 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05830 -1.1 -3.5 hypothetical protein compare
PS417_05520 -1.1 -5.3 histidine kinase compare
PS417_18545 -1.1 -1.7 cell division protein compare
PS417_20855 -1.1 -1.2 hypothetical protein compare
PS417_22445 -1.1 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_24710 -1.1 -4.8 lipoprotein compare
PS417_05010 -1.1 -2.3 IclR family transcriptional regulator compare
PS417_27040 -1.0 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_00180 -1.0 -2.4 tryptophan synthase subunit alpha compare
PS417_02870 -1.0 -4.9 TonB-dependent receptor compare
PS417_07140 -1.0 -3.6 peptidase M48 compare
PS417_06530 -1.0 -1.9 membrane protein compare
PS417_27870 -1.0 -3.3 ATP-dependent DNA helicase RecG compare
PS417_17295 -1.0 -4.0 RND transporter MFP subunit compare
PS417_06375 -1.0 -0.9 deoxycytidine triphosphate deaminase compare
PS417_17285 -1.0 -5.5 hypothetical protein compare
PS417_28265 -1.0 -2.1 pyridoxamine kinase compare
PS417_22450 -1.0 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_27155 -1.0 -1.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_06205 -1.0 -5.6 methionine aminopeptidase compare
PS417_10720 -1.0 -5.2 chemotaxis protein CheY compare
PS417_18425 -1.0 -1.6 sporulation protein compare
PS417_09200 -0.9 -2.3 ABC transporter compare
PS417_17290 -0.9 -4.7 RND transporter compare
PS417_06245 -0.9 -1.5 zinc metallopeptidase RseP compare
PS417_27475 -0.9 -1.1 membrane protein compare
PS417_01030 -0.9 -1.7 glutamine ABC transporter substrate-binding protein compare
PS417_18355 -0.9 -5.0 DNA-binding protein compare
PS417_19720 -0.9 -1.6 DNA-binding protein compare
PS417_15105 -0.9 -4.1 membrane protein compare
PS417_04650 -0.9 -0.5 D-alanine--D-alanine ligase compare
PS417_26715 -0.9 -4.0 peptidase P60 compare
PS417_02630 -0.9 -2.1 NAD synthetase compare
PS417_07120 -0.9 -4.4 RNA polymerase sigma-H factor compare
PS417_26175 -0.9 -1.1 sarcosine oxidase subunit gamma compare
PS417_23545 -0.9 -2.0 gamma-glutamyl kinase compare
PS417_05595 -0.9 -5.7 ornithine carbamoyltransferase compare
PS417_04500 -0.9 -1.4 hypothetical protein compare
PS417_09325 -0.9 -2.2 peptidase S41 compare
PS417_05025 -0.9 -1.6 maleylacetoacetate isomerase compare
PS417_13190 -0.9 -6.0 transporter compare
PS417_15100 -0.8 -1.6 BatB protein compare
PS417_04585 -0.8 -1.3 hypothetical protein compare
PS417_08545 -0.8 -1.5 aromatic ring-opening dioxygenase LigB compare
PS417_08835 -0.8 -5.0 ABC transporter compare
PS417_18420 -0.8 -2.6 deoxyribonuclease compare
PS417_03385 -0.8 -1.0 flavin reductase compare
PS417_12540 -0.8 -1.6 hypothetical protein compare
PS417_26070 -0.8 -3.3 amino acid ABC transporter substrate-binding protein compare
PS417_27815 -0.8 -1.3 hypothetical protein compare
PS417_01565 -0.8 -3.4 imidazole glycerol phosphate synthase compare
PS417_03525 -0.8 -1.5 hypothetical protein compare
PS417_21000 -0.8 -1.8 CrfX protein compare
PS417_24615 -0.8 -0.8 hypothetical protein compare
PS417_07755 -0.8 -5.1 hypothetical protein compare
PS417_23820 -0.8 -2.8 hypothetical protein compare
PS417_09205 -0.8 -4.2 membrane protein compare
PS417_08125 -0.8 -0.5 prephenate dehydratase compare
PS417_28145 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_27910 -0.8 -1.9 PppA compare
PS417_04590 -0.8 -3.6 methyltransferase compare
PS417_10335 -0.8 -1.5 peroxiredoxin compare
PS417_02270 -0.8 -2.4 carbamoyltransferase compare
PS417_01575 -0.8 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24745 -0.8 -2.1 gamma-glutamyl phosphate reductase compare
PS417_20140 -0.8 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
PS417_22680 -0.8 -2.8 chemotaxis protein CheY compare
PS417_03655 -0.8 -2.5 short-chain dehydrogenase compare
PS417_04440 -0.7 -1.7 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_11060 -0.7 -1.5 transporter compare
PS417_26770 -0.7 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_14400 -0.7 -2.0 hypothetical protein compare
PS417_16400 -0.7 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_00550 -0.7 -0.9 hypothetical protein compare
PS417_23170 -0.7 -1.7 FeS assembly protein IscX compare
PS417_10225 -0.7 -2.9 chitinase compare
PS417_01955 -0.7 -4.1 peptidase compare
PS417_27515 -0.7 -2.5 heme biosynthesis protein HemY compare
PS417_12280 -0.7 -1.6 MerR family transcriptional regulator compare
PS417_27595 -0.7 -1.4 recombinase XerC compare
PS417_01305 -0.7 -2.4 Fis family transcriptional regulator compare
PS417_23205 -0.7 -2.5 transcriptional regulator compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_18940 -0.7 -3.0 LysR family transcriptional regulator compare
PS417_06025 -0.7 -2.2 alpha/beta hydrolase compare
PS417_05110 -0.7 -4.6 peptidase compare
PS417_03000 -0.7 -2.5 translation initiation factor Sui1 compare
PS417_16310 -0.7 -2.5 membrane protein compare
PS417_15135 -0.7 -1.2 hypothetical protein compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_23825 -0.7 -3.6 penicillin-binding protein compare
PS417_05475 -0.7 -1.5 arginase compare
PS417_17300 -0.7 -3.5 RND transporter compare
PS417_07165 -0.7 -2.5 dihydrodipicolinate synthase compare
PS417_09915 -0.7 -1.1 hypothetical protein compare
PS417_07470 -0.7 -0.7 hypothetical protein compare
PS417_17415 -0.7 -1.9 histidine kinase compare
PS417_15090 -0.7 -1.3 hypothetical protein compare
PS417_25700 -0.7 -1.4 cyclic AMP receptor protein compare
PS417_17000 -0.7 -1.7 MerR family transcriptional regulator compare
PS417_17830 -0.7 -1.9 4-hydroxyphenylacetate isomerase compare
PS417_02495 -0.7 -2.2 GTPase HflX compare
PS417_18530 -0.6 -2.2 O-succinylhomoserine sulfhydrylase compare
PS417_24525 -0.6 -1.4 nuclease compare
PS417_09150 -0.6 -1.4 energy transducer TonB compare
PS417_01855 -0.6 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_06685 -0.6 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_27315 -0.6 -1.1 hypothetical protein compare
PS417_05300 -0.6 -4.1 glucose dehydrogenase compare
PS417_12695 -0.6 -2.4 mannitol dehydrogenase compare
PS417_24355 -0.6 -1.7 MFS transporter compare
PS417_26225 -0.6 -2.5 electron transfer flavoprotein subunit beta compare
PS417_00675 -0.6 -2.1 iron dicitrate transport regulator FecR compare


Specific Phenotypes

For 8 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms