Experiment set18IT033 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27300 -4.4 -1.7 cell division protein ZapA compare
PS417_21480 -4.4 -2.7 23S rRNA pseudouridylate synthase compare
PS417_06375 -4.3 -1.6 deoxycytidine triphosphate deaminase compare
PS417_27795 -3.6 -1.3 orotate phosphoribosyltransferase compare
PS417_27865 -3.3 -4.1 LysR family transcriptional regulator compare
PS417_08125 -3.2 -1.2 prephenate dehydratase compare
PS417_01580 -3.0 -2.1 imidazole glycerol phosphate synthase compare
PS417_01915 -2.9 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04365 -2.8 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24745 -2.8 -3.3 gamma-glutamyl phosphate reductase compare
PS417_23025 -2.8 -7.6 murein transglycosylase compare
PS417_22450 -2.6 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_19755 -2.6 -2.7 flagellar motor switch protein FliM compare
PS417_26990 -2.5 -1.3 RNA pyrophosphohydrolase compare
PS417_26985 -2.4 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14065 -2.4 -9.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_16490 -2.3 -1.4 cell division protein FtsK compare
PS417_22565 -2.2 -1.1 formyltetrahydrofolate deformylase compare
PS417_16510 -2.2 -5.6 Clp protease ClpX compare
PS417_20855 -2.2 -1.8 hypothetical protein compare
PS417_20785 -2.2 -3.4 transcriptional regulator compare
PS417_08135 -2.2 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03560 -2.1 -2.3 GTP-binding protein compare
PS417_00045 -2.1 -2.3 glycerol acyltransferase compare
PS417_19850 -2.1 -8.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02975 -2.1 -3.6 3-dehydroquinate dehydratase compare
PS417_16005 -2.0 -3.2 ATPase compare
PS417_12805 -1.9 -9.9 glycogen branching protein compare
PS417_19665 -1.9 -4.9 flagellar motor protein MotD compare
PS417_18310 -1.9 -1.2 hypothetical protein compare
PS417_27040 -1.9 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_06200 -1.8 -5.2 protein-PII uridylyltransferase compare
PS417_19730 -1.8 -3.4 flagellar biosynthesis protein FliR compare
PS417_19705 -1.8 -3.3 flagellar biosynthesis regulator FlhF compare
PS417_21595 -1.8 -4.8 flagellar biosynthesis protein FlgN compare
PS417_08220 -1.7 -1.4 epimerase compare
PS417_19860 -1.7 -10.8 flagellar hook protein FlgL compare
PS417_23995 -1.7 -1.1 preprotein translocase subunit SecG compare
PS417_27870 -1.7 -3.9 ATP-dependent DNA helicase RecG compare
PS417_19675 -1.7 -5.4 chemotaxis protein CheY compare
PS417_21630 -1.7 -2.2 magnesium transporter compare
PS417_21000 -1.7 -2.7 CrfX protein compare
PS417_04375 -1.7 -1.9 ABC transporter ATP-binding protein compare
PS417_00180 -1.7 -2.9 tryptophan synthase subunit alpha compare
PS417_19740 -1.7 -5.1 flagellar biosynthesis protein flip compare
PS417_27195 -1.6 -1.7 N-acetylglutamate synthase compare
PS417_08730 -1.6 -2.1 cytochrome C compare
PS417_01565 -1.6 -3.8 imidazole glycerol phosphate synthase compare
PS417_19800 -1.6 -3.3 flagellar motor switch protein FliG compare
PS417_04500 -1.6 -2.1 hypothetical protein compare
PS417_19835 -1.6 -1.8 flagellar biosynthesis protein FliS compare
PS417_23545 -1.6 -2.2 gamma-glutamyl kinase compare
PS417_19865 -1.6 -7.6 flagellar hook protein FlgK compare
PS417_21575 -1.6 -5.2 chemotaxis protein compare
PS417_19795 -1.6 -7.8 flagellar assembly protein FliH compare
PS417_25315 -1.5 -4.7 membrane protein compare
PS417_21555 -1.5 -7.6 flagellar hook protein FlgE compare
PS417_02485 -1.5 -3.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21565 -1.5 -3.5 flagellar basal body rod protein FlgC compare
PS417_21570 -1.5 -6.1 flagellar basal body rod protein FlgB compare
PS417_21070 -1.5 -2.6 aconitate hydratase compare
PS417_19840 -1.5 -8.0 flagellar cap protein FliD compare
PS417_03260 -1.5 -1.7 5S ribosomal RNA compare
PS417_19880 -1.5 -7.5 flagellar basal body L-ring protein compare
PS417_07170 -1.5 -4.7 hypothetical protein compare
PS417_19745 -1.5 -4.5 flagellar assembly protein FliO compare
PS417_02000 -1.4 -8.5 glutamate synthase compare
PS417_19885 -1.4 -3.6 flagellar basal body rod protein FlgG compare
PS417_19710 -1.4 -9.0 flagellar biosynthesis protein FlhA compare
PS417_22445 -1.4 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_26730 -1.4 -0.7 pyrroline-5-carboxylate reductase compare
PS417_19690 -1.4 -3.9 histidine kinase compare
PS417_19725 -1.4 -4.8 flagellar biosynthesis protein FlhB compare
PS417_23390 -1.4 -5.2 ubiquinol oxidase subunit II compare
PS417_08090 -1.4 -0.9 3-oxoacyl-ACP reductase compare
PS417_19650 -1.3 -4.4 chemotaxis protein CheW compare
PS417_06680 -1.3 -5.8 nuclease PIN compare
PS417_19785 -1.3 -4.8 flagellar biogenesis protein compare
PS417_23810 -1.3 -7.8 acetolactate synthase 3 catalytic subunit compare
PS417_19695 -1.3 -7.0 flagellar biosynthesis sigma factor compare
PS417_08620 -1.3 -1.3 hypothetical protein compare
PS417_23770 -1.3 -0.9 exodeoxyribonuclease V subunit alpha compare
PS417_02225 -1.3 -3.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_03385 -1.3 -1.6 flavin reductase compare
PS417_19765 -1.3 -8.0 flagellar hook-length control protein compare
PS417_07615 -1.3 -3.5 TetR family transcriptional regulator compare
PS417_02560 -1.3 -1.6 23S rRNA methyltransferase compare
PS417_27835 -1.2 -5.0 endoribonuclease compare
PS417_27800 -1.2 -2.0 exodeoxyribonuclease III compare
PS417_19735 -1.2 -3.2 flagellar biosynthesis protein FliQ compare
PS417_20025 -1.2 -1.6 alpha-ribazole phosphatase compare
PS417_00195 -1.2 -2.3 hypothetical protein compare
PS417_02005 -1.2 -7.0 glutamate synthase compare
PS417_07795 -1.2 -2.1 hypothetical protein compare
PS417_02555 -1.2 -7.8 exoribonuclease R compare
PS417_06205 -1.2 -5.6 methionine aminopeptidase compare
PS417_19660 -1.2 -4.9 cobalamin biosynthesis protein CobQ compare
PS417_21585 -1.2 -5.9 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_27425 -1.2 -6.1 exopolyphosphatase compare
PS417_27520 -1.2 -2.3 uroporphyrin-III methyltransferase compare
PS417_05815 -1.1 -3.3 recombinase RecA compare
PS417_01850 -1.1 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23380 -1.1 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27640 -1.1 -1.2 TetR family transcriptional regulator compare
PS417_17070 -1.1 -1.7 RNA polymerase subunit sigma-24 compare
PS417_12855 -1.1 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04385 -1.1 -2.6 organic solvent ABC transporter substrate-binding protein compare
PS417_24500 -1.1 -3.0 DEAD/DEAH box helicase compare
PS417_07710 -1.1 -3.2 membrane protein compare
PS417_10265 -1.1 -3.1 peptidase compare
PS417_19825 -1.1 -8.7 ATPase AAA compare
PS417_01635 -1.1 -6.6 nitrogen regulation protein NR(I) compare
PS417_23915 -1.1 -3.7 pantoate--beta-alanine ligase compare
PS417_04390 -1.1 -3.5 toluene tolerance protein compare
PS417_28225 -1.1 -1.3 hypothetical protein compare
PS417_24585 -1.0 -7.0 AMP nucleosidase compare
PS417_22570 -1.0 -0.9 H-NS histone compare
PS417_09235 -1.0 -0.9 molecular chaperone compare
PS417_20700 -1.0 -6.1 cbb3-type cytochrome c oxidase subunit I compare
PS417_24155 -1.0 -0.9 ATP-binding protein compare
PS417_09325 -1.0 -2.8 peptidase S41 compare
PS417_04595 -1.0 -1.9 cell division protein MraZ compare
PS417_04585 -1.0 -1.2 hypothetical protein compare
PS417_12310 -1.0 -4.5 methionine synthase compare
PS417_01965 -1.0 -1.8 fimbriae biosynthesis protein compare
PS417_05100 -1.0 -1.4 RNA polymerase sigma factor compare
PS417_27515 -1.0 -2.8 heme biosynthesis protein HemY compare
PS417_22840 -1.0 -1.8 tRNA-Met compare
PS417_07640 -1.0 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_15105 -1.0 -3.9 membrane protein compare
PS417_19350 -1.0 -2.8 GTP cyclohydrolase compare
PS417_19805 -1.0 -3.1 flagellar M-ring protein FliF compare
PS417_23370 -1.0 -3.2 protoheme IX farnesyltransferase compare
PS417_18395 -0.9 -2.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_16370 -0.9 -4.3 chemotaxis protein CheY compare
PS417_00405 -0.9 -5.3 DNA polymerase I compare
PS417_02950 -0.9 -1.5 tRNA-dihydrouridine synthase B compare
PS417_15095 -0.9 -2.4 hypothetical protein compare
PS417_17240 -0.9 -1.4 trigger factor compare
PS417_04050 -0.9 -1.2 peptide ABC transporter ATP-binding protein compare
PS417_15495 -0.9 -2.0 FAD-dependent oxidoreductase compare
PS417_15820 -0.9 -1.9 universal stress protein UspA compare
PS417_07560 -0.9 -1.0 universal stress protein UspA compare
PS417_07140 -0.9 -2.0 peptidase M48 compare
PS417_20705 -0.9 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_02415 -0.9 -2.0 phosphoserine phosphatase compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_01400 -0.9 -2.0 hypothetical protein compare
PS417_19870 -0.9 -2.4 flagellar rod assembly protein FlgJ compare
PS417_11820 -0.9 -2.2 histidine kinase compare
PS417_19655 -0.9 -2.9 chemotaxis protein CheW compare
PS417_21210 -0.9 -1.8 amidotransferase compare
PS417_02880 -0.9 -1.1 copper chaperone compare
PS417_16555 -0.9 -1.2 cupin compare
PS417_20635 -0.9 -0.8 ABC transporter ATP-binding protein compare
PS417_23385 -0.9 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_14810 -0.8 -1.8 Fosmidomycin resistance protein compare
PS417_14805 -0.8 -1.3 AraC family transcriptional regulator compare
PS417_16560 -0.8 -2.0 GNAT family acetyltransferase compare
PS417_19790 -0.8 -2.7 ATP synthase compare
PS417_18560 -0.8 -3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01620 -0.8 -2.0 preprotein translocase subunit SecB compare
PS417_28040 -0.8 -2.2 histidine kinase compare
PS417_27075 -0.8 -1.9 thiol-disulfide isomerase compare
PS417_17675 -0.8 -1.4 ABC transporter compare
PS417_01030 -0.8 -1.3 glutamine ABC transporter substrate-binding protein compare
PS417_27245 -0.8 -2.4 aminotransferase DegT compare
PS417_18710 -0.8 -3.3 hypothetical protein compare
PS417_09470 -0.8 -0.9 hypothetical protein compare
PS417_13730 -0.8 -2.1 hypothetical protein compare
PS417_00845 -0.8 -1.3 transcriptional regulator compare
PS417_12015 -0.8 -2.4 phosphoglycerate mutase compare
PS417_05790 -0.8 -2.1 hypothetical protein compare
PS417_24705 -0.8 -1.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_12695 -0.8 -3.4 mannitol dehydrogenase compare
PS417_11060 -0.8 -1.6 transporter compare
PS417_15085 -0.8 -2.1 ATPase AAA compare
PS417_23375 -0.8 -1.4 cytochrome C oxidase compare
PS417_20140 -0.8 -1.6 nucleoprotein/polynucleotide-associated enzyme compare
PS417_27340 -0.8 -2.1 NADPH:quinone oxidoreductase compare
PS417_04420 -0.8 -4.1 histidinol dehydrogenase compare
PS417_06780 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_26655 -0.7 -1.9 chemotaxis protein compare
PS417_24710 -0.7 -3.5 lipoprotein compare
PS417_01795 -0.7 -5.0 glucosyltransferase MdoH compare
PS417_18715 -0.7 -4.2 peptidase M4 compare
PS417_15915 -0.7 -1.3 hypothetical protein compare
PS417_06540 -0.7 -1.1 membrane protein compare
PS417_25390 -0.7 -2.4 MFS transporter compare
PS417_20160 -0.7 -3.1 cysteine synthase compare
PS417_10995 -0.7 -1.5 GntR family transcriptional regulator compare
PS417_12110 -0.7 -1.5 ATP-binding protein compare
PS417_07855 -0.7 -3.0 hypothetical protein compare
PS417_28050 -0.7 -2.3 hypothetical protein compare
PS417_00385 -0.7 -0.7 Fur family transcriptional regulator compare
PS417_05775 -0.7 -2.8 tail tape measure protein compare
PS417_08545 -0.7 -1.2 aromatic ring-opening dioxygenase LigB compare
PS417_04475 -0.7 -2.2 hypothetical protein compare
PS417_21125 -0.7 -4.1 phosphoadenosine phosphosulfate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms