Experiment set18IT033 for Pseudomonas putida KT2440

Compare to:

Growth at 30C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_4364 -6.6 -4.6 putative Anti-sigma F factor antagonist compare
PP_0293 -6.5 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_2370 -5.8 -3.9 conserved protein of unknown function compare
PP_3511 -5.8 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_0967 -5.6 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -4.7 -8.5 tryptophan synthase beta chain compare
PP_1988 -4.5 -7.2 3-isopropylmalate dehydrogenase compare
PP_1079 -4.4 -4.8 Ornithine carbamoyltransferase compare
PP_0422 -4.4 -3.7 Indole-3-glycerol phosphate synthase compare
PP_5348 -4.3 -7.4 Transcriptional regulator, LysR family compare
PP_2976 -4.3 -1.7 putative transposase compare
PP_5303 -4.3 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0289 -4.3 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2403 -4.3 -1.7 Chemotaxis protein CheY compare
PP_0966 -4.2 -8.1 Histidinol dehydrogenase compare
PP_5289 -4.0 -4.7 Acetylglutamate kinase compare
PP_0421 -4.0 -6.7 Anthranilate phosphoribosyltransferase compare
PP_4122 -3.9 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1022 -3.9 -4.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4909 -3.9 -7.7 phosphoserine phosphatase compare
PP_0290 -3.9 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -3.8 -10.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -3.6 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -3.6 -10.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3417 -3.6 -5.0 D-gluconate transporter compare
PP_5347 -3.5 -8.3 pyruvate carboxylase subunit A compare
PP_0184 -3.5 -6.2 Argininosuccinate lyase compare
PP_2168 -3.5 -6.9 Transaldolase compare
PP_5346 -3.5 -6.8 pyruvate carboxylase subunit B compare
PP_4696 -3.5 -6.5 Nitrogen regulation protein NR(I) compare
PP_2001 -3.5 -5.7 O-succinylhomoserine sulfhydrylase compare
PP_0417 -3.4 -11.1 Anthranilate synthase component 1 compare
PP_2371 -3.4 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4678 -3.4 -9.3 Ketol-acid reductoisomerase compare
PP_4890 -3.3 -2.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1237 -3.2 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5097 -3.2 -8.1 homoserine O-acetyltransferase compare
PP_4679 -3.2 -4.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4126 -3.2 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_2883 -3.1 -1.9 conserved protein of unknown function compare
PP_5185 -3.1 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2378 -3.1 -3.6 Fe/S biogenesis protein NfuA compare
PP_1088 -3.1 -7.9 Argininosuccinate synthase compare
PP_2999 -3.1 -1.6 Glyoxalase family protein compare
PP_4874 -3.1 -1.7 50S ribosomal protein L9 compare
PP_1025 -3.0 -8.1 2-isopropylmalate synthase compare
PP_5098 -3.0 -4.9 methionine biosynthesis protein MetW compare
PP_0291 -3.0 -3.8 conserved protein of unknown function compare
PP_4984 -3.0 -6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -2.9 -5.1 dethiobiotin synthetase compare
PP_2121 -2.8 -2.2 putative Lipoprotein compare
PP_5014 -2.8 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1986 -2.8 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_5128 -2.8 -5.5 Dihydroxy-acid dehydratase compare
PP_0420 -2.8 -6.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0965 -2.7 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -2.7 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2402 -2.6 -2.9 putative Sensor histidine kinase compare
PP_1362 -2.6 -3.6 pyruvate kinase II compare
PP_1898 -2.6 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5267 -2.6 -2.4 putative cytochrome c5 compare
PP_1995 -2.5 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_0362 -2.4 -8.0 Biotin synthase compare
PP_2328 -2.4 -4.2 Phosphoadenosine phosphosulfate reductase compare
PP_1985 -2.4 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_4830 -2.3 -4.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_0364 -2.3 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_0363 -2.3 -6.8 8-amino-7-oxononanoate synthase compare
PP_2327 -2.3 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4964 -2.3 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_3365 -2.2 -1.3 Acetolactate synthase compare
PP_2388 -2.1 -2.5 Transporter, LysE family compare
PP_0566 -2.1 -1.3 translation-related factor compare
PP_1654 -2.1 -3.0 cysteine synthase B compare
PP_0164 -2.1 -3.9 conserved protein of unknown function compare
PP_1783 -2.0 -1.4 dTDP-glucose pyrophosphorylase compare
PP_0003 -2.0 -2.8 16S RNA methyltransferase compare
PP_1553 -2.0 -1.6 conserved protein of unknown function compare
PP_4120 -2.0 -4.1 NADH-quinone oxidoreductase subunit B compare
PP_5155 -2.0 -2.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4994 -2.0 -3.0 conserved protein of unknown function compare
PP_0377 -1.9 -1.9 coenzyme PQQ synthesis protein D compare
PP_0365 -1.9 -4.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4977 -1.9 -5.2 5,10-methylenetetrahydrofolate reductase compare
PP_1293 -1.9 -1.5 molybdopterin synthase small subunit compare
PP_4546 -1.8 -4.3 ATP-dependent helicase HrpA compare
PP_2581 -1.8 -1.6 conserved protein of unknown function compare
PP_0126 -1.8 -2.2 Cytochrome c4 compare
PP_4693 -1.8 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_0905 -1.7 -1.8 conserved exported protein of unknown function compare
PP_0958 -1.7 -3.9 phospholipid ABC transporter ATP-binding subunit compare
PP_1508 -1.7 -2.5 conserved protein of unknown function compare
PP_0787 -1.7 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4785 -1.7 -3.7 conserved exported protein of unknown function compare
PP_0001 -1.7 -1.4 probable chromosome-partitioning protein compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1994 -1.6 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_0434 -1.6 -3.2 Anhydro-N-acetylmuramic acid kinase compare
PP_5225 -1.6 -1.2 frataxin compare
PP_5028 -1.6 -3.0 proline iminopeptidase compare
PP_2475 -1.6 -3.5 Transcriptional regulator, TetR family compare
PP_4811 -1.6 -2.2 Gamma-glutamyl phosphate reductase compare
PP_3505 -1.6 -1.2 conserved protein of unknown function compare
PP_0735 -1.5 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_4981 -1.5 -2.2 polyisoprene-binding protein, acidic stress response factor compare
PP_4943 -1.5 -1.8 putative Glycosyl transferase compare
PP_5217 -1.4 -4.7 Polyphosphate kinase compare
PP_3506 -1.4 -2.4 Magnesium chelatase, subunit ChII compare
PP_3014 -1.4 -1.5 conserved exported protein of unknown function compare
PP_0789 -1.4 -2.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5104 -1.4 -4.1 thiazole synthase compare
PP_1677 -1.4 -2.5 Adenosyl-cobyric acid synthase compare
PP_2650 -1.4 -1.9 putative 4-hydroxybutyrate dehydrogenase compare
PP_1231 -1.4 -3.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2375 -1.4 -6.6 cobalamin-dependent methionine synthase compare
PP_4832 -1.4 -2.0 Precorrin-6x reductase compare
PP_3307 -1.4 -1.8 conserved protein of unknown function compare
PP_5017 -1.3 -0.9 Sec-independent protein translocase protein TatB compare
PP_0406 -1.3 -1.9 Nucleotidyltransferase family protein compare
PP_2203 -1.3 -1.4 conserved protein of unknown function compare
PP_2633 -1.3 -0.8 conserved protein of unknown function compare
PP_4131 -1.3 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_1912 -1.3 -2.4 Phosphate acyltransferase compare
PP_1808 -1.3 -2.2 glucose-6-phosphate isomerase compare
PP_4018 -1.3 -1.6 Acetyltransferase, GNAT family compare
PP_4094 -1.3 -1.3 conserved protein of unknown function compare
PP_1633 -1.3 -2.0 conserved exported protein of unknown function compare
PP_3052 -1.3 -1.0 conserved protein of unknown function compare
PP_3971 -1.3 -1.1 conserved protein of unknown function compare
PP_4480 -1.3 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_0405 -1.3 -4.0 conserved protein of unknown function compare
PP_4917 -1.2 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2088 -1.2 -1.5 RNA polymerase sigma factor SigX compare
PP_0547 -1.2 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0313 -1.2 -2.4 putative electron transfer flavoprotein beta subunit compare
PP_4902 -1.2 -1.4 Oligoribonuclease compare
PP_2373 -1.2 -1.2 conserved protein of unknown function compare
PP_2622 -1.2 -2.2 conserved protein of unknown function compare
PP_5331 -1.2 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_0819 -1.2 -2.8 conserved ferredoxin-like protein of unknown function compare
PP_0393 -1.2 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4479 -1.2 -2.1 arginine N-succinyltransferase, subunit beta compare
PP_4787 -1.2 -1.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1656 -1.2 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1348 -1.2 -2.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1664 -1.2 -1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5095 -1.1 -0.9 pyrroline-5-carboxylate reductase compare
PP_4699 -1.1 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1675 -1.1 -3.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3507 -1.1 -5.0 Aerobic cobaltochelatase subunit CobN compare
PP_3064 -1.1 -2.0 Phage tail protein compare
PP_1679 -1.1 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2087 -1.1 -1.4 CmpX protein compare
PP_1589 -1.1 -3.5 uridylyltransferase compare
PP_3206 -1.1 -3.3 conserved protein of unknown function compare
PP_0035 -1.1 -1.5 putative bactoprenol-linked glycose transferase compare
PP_1681 -1.1 -3.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4424 -1.1 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5076 -1.1 -6.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_2718 -1.1 -1.7 arsenic resistance transcriptional regulator compare
PP_4695 -1.1 -4.6 Sensory box histidine kinase compare
PP_4560 -1.1 -1.8 putative Ribonuclease BN compare
PP_5007 -1.1 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5483 -1.1 -1.0 conserved protein of unknown function compare
PP_4254 -1.1 -1.3 conserved protein of unknown function compare
PP_2417 -1.1 -0.9 putative Iron ABC transporter, permease protein compare
PP_2107 -1.0 -1.4 conserved protein of unknown function compare
PP_5100 -1.0 -0.9 dITP/XTP pyrophosphatase compare
PP_5310 -1.0 -2.7 junction-specific ATP-dependent DNA helicase compare
PP_1013 -1.0 -3.0 Sensor histidine kinase compare
PP_5628 -1.0 -2.3 conserved protein of unknown function compare
PP_2970 -1.0 -1.7 conserved exported protein of unknown function compare
PP_0794 -1.0 -2.1 1-phosphofructokinase monomer compare
PP_0630 -1.0 -0.8 DNA gyrase inhibitor YacG compare
PP_0893 -1.0 -2.0 ThiJ/PfpI family protein compare
PP_0959 -1.0 -0.8 phospholipid ABC transporter compare
PP_2533 -1.0 -2.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3748 -1.0 -0.8 conserved hypothetical protein compare
PP_1190 -1.0 -2.2 conserved protein of unknown function compare
PP_3197 -1.0 -2.6 Glyoxalase family protein compare
PP_5350 -1.0 -1.8 Transcriptional regulator, RpiR family compare
PP_4238 -1.0 -1.9 conserved protein of unknown function compare
PP_5507 -1.0 -2.1 protein of unknown function compare
PP_3792 -1.0 -2.4 conserved protein of unknown function compare
PP_2880 -1.0 -1.7 Transcriptional regulator, TetR family compare
PP_2229 -1.0 -1.5 putative K(+)/H(+) antiporter subunit C compare
PP_2737 -1.0 -0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2835 -1.0 -1.5 putative oxidoreductase compare
PP_0138 -1.0 -4.4 conserved membrane protein of unknown function compare
PP_2145 -1.0 -1.3 beta-N-acetylglucosaminidase compare
PP_4213 -1.0 -2.0 putative dipeptidase compare
PP_5639 -0.9 -3.2 conserved exported protein of unknown function compare
PP_3190 -0.9 -2.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_2324 -0.9 -3.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1233 -0.9 -2.3 sulfurtransferase compare
PP_3211 -0.9 -2.7 ABC transporter, ATP-binding protein compare
PP_1353 -0.9 -1.2 conserved membrane protein of unknown function compare
PP_3380 -0.9 -2.0 2-ketogluconate utilization repressor compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms