Experiment set18IT032 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21570 -9.9 -3.7 flagellar basal body rod protein FlgB compare
PS417_19740 -9.5 -3.4 flagellar biosynthesis protein flip compare
PS417_01575 -8.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01565 -8.8 -3.3 imidazole glycerol phosphate synthase compare
PS417_27835 -8.6 -4.1 endoribonuclease compare
PS417_25720 -8.6 -4.5 anthranilate synthase component II compare
PS417_19765 -8.6 -5.0 flagellar hook-length control protein compare
PS417_19690 -8.6 -3.8 histidine kinase compare
PS417_24710 -8.4 -5.2 lipoprotein compare
PS417_19695 -8.4 -5.3 flagellar biosynthesis sigma factor compare
PS417_19880 -8.4 -5.3 flagellar basal body L-ring protein compare
PS417_18595 -8.2 -3.0 3-isopropylmalate dehydratase compare
PS417_02510 -8.2 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19730 -8.1 -2.6 flagellar biosynthesis protein FliR compare
PS417_19710 -8.0 -5.5 flagellar biosynthesis protein FlhA compare
PS417_18540 -8.0 -3.3 colicin V production CvpA compare
PS417_18600 -7.9 -2.6 isopropylmalate isomerase compare
PS417_21595 -7.9 -2.9 flagellar biosynthesis protein FlgN compare
PS417_19795 -7.9 -6.9 flagellar assembly protein FliH compare
PS417_21565 -7.9 -3.3 flagellar basal body rod protein FlgC compare
PS417_22850 -7.8 -4.7 virulence factor family protein compare
PS417_19725 -7.8 -3.8 flagellar biosynthesis protein FlhB compare
PS417_26740 -7.7 -4.8 homoserine acetyltransferase compare
PS417_02210 -7.7 -4.9 diguanylate cyclase compare
PS417_18560 -7.5 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19785 -7.4 -2.6 flagellar biogenesis protein compare
PS417_19650 -7.2 -3.5 chemotaxis protein CheW compare
PS417_04415 -7.2 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_14065 -7.2 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21035 -7.1 -4.9 multidrug transporter compare
PS417_23805 -7.1 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_19745 -7.1 -5.3 flagellar assembly protein FliO compare
PS417_19655 -7.0 -3.1 chemotaxis protein CheW compare
PS417_19860 -7.0 -6.9 flagellar hook protein FlgL compare
PS417_01795 -6.9 -9.5 glucosyltransferase MdoH compare
PS417_19660 -6.9 -4.9 cobalamin biosynthesis protein CobQ compare
PS417_21585 -6.7 -6.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19685 -6.7 -4.8 protein phosphatase compare
PS417_26995 -6.7 -4.6 phosphoserine phosphatase compare
PS417_23800 -6.7 -4.6 ketol-acid reductoisomerase compare
PS417_19825 -6.6 -7.7 ATPase AAA compare
PS417_19755 -6.6 -1.2 flagellar motor switch protein FliM compare
PS417_25715 -6.6 -3.6 anthranilate phosphoribosyltransferase compare
PS417_27040 -6.4 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_18585 -6.4 -3.8 3-isopropylmalate dehydrogenase compare
PS417_00045 -6.4 -1.2 glycerol acyltransferase compare
PS417_19870 -6.3 -3.2 flagellar rod assembly protein FlgJ compare
PS417_19675 -6.3 -3.5 chemotaxis protein CheY compare
PS417_20650 -6.3 -6.1 hypothetical protein compare
PS417_19800 -6.3 -1.7 flagellar motor switch protein FliG compare
PS417_22845 -6.3 -20.5 membrane protein compare
PS417_01640 -6.2 -3.2 histidine kinase compare
PS417_19790 -6.2 -2.9 ATP synthase compare
PS417_19620 -6.2 -2.0 hypothetical protein compare
PS417_25725 -6.1 -10.6 anthranilate synthase component I compare
PS417_16370 -6.1 -8.3 chemotaxis protein CheY compare
PS417_21390 -6.1 -4.9 hypothetical protein compare
PS417_19735 -6.0 -3.8 flagellar biosynthesis protein FliQ compare
PS417_19630 -6.0 -2.5 LuxR family transcriptional regulator compare
PS417_05635 -6.0 -7.1 membrane protein compare
PS417_01855 -5.9 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_04420 -5.9 -10.6 histidinol dehydrogenase compare
PS417_20105 -5.8 -20.3 glycosyl transferase compare
PS417_19850 -5.8 -8.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23950 -5.8 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_23810 -5.6 -10.8 acetolactate synthase 3 catalytic subunit compare
PS417_21555 -5.6 -6.9 flagellar hook protein FlgE compare
PS417_21125 -5.5 -5.0 phosphoadenosine phosphosulfate reductase compare
PS417_01955 -5.5 -6.5 peptidase compare
PS417_00185 -5.4 -2.6 tryptophan synthase subunit beta compare
PS417_05595 -5.4 -7.7 ornithine carbamoyltransferase compare
PS417_12855 -5.4 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19885 -5.3 -1.3 flagellar basal body rod protein FlgG compare
PS417_20095 -5.3 -15.9 hypothetical protein compare
PS417_01850 -5.2 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26745 -5.2 -4.4 methionine biosynthesis protein MetW compare
PS417_00455 -5.2 -1.7 hypothetical protein compare
PS417_25645 -5.2 -5.0 peptidase M23 compare
PS417_23915 -5.1 -4.4 pantoate--beta-alanine ligase compare
PS417_19625 -5.1 -4.0 histidine kinase compare
PS417_21575 -5.1 -4.9 chemotaxis protein compare
PS417_07170 -5.0 -2.9 hypothetical protein compare
PS417_10720 -5.0 -8.6 chemotaxis protein CheY compare
PS417_08195 -5.0 -9.0 hypothetical protein compare
PS417_27435 -5.0 -7.5 polyphosphate kinase compare
PS417_19665 -4.9 -3.4 flagellar motor protein MotD compare
PS417_19805 -4.8 -2.9 flagellar M-ring protein FliF compare
PS417_22410 -4.8 -5.1 hypothetical protein compare
PS417_18690 -4.8 -3.6 aromatic amino acid aminotransferase compare
PS417_23375 -4.8 -1.3 cytochrome C oxidase compare
PS417_09695 -4.7 -2.1 hydrolase compare
PS417_28070 -4.7 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_18545 -4.7 -2.1 cell division protein compare
PS417_01635 -4.7 -3.3 nitrogen regulation protein NR(I) compare
PS417_05885 -4.7 -6.5 potassium transporter Kup compare
PS417_20635 -4.7 -0.9 ABC transporter ATP-binding protein compare
PS417_19645 -4.7 -2.1 chemotaxis protein compare
PS417_06200 -4.6 -6.4 protein-PII uridylyltransferase compare
PS417_27010 -4.6 -11.7 threonine dehydratase compare
PS417_02485 -4.6 -4.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00180 -4.5 -1.8 tryptophan synthase subunit alpha compare
PS417_14940 -4.5 -1.5 LysR family transcriptional regulator compare
PS417_02475 -4.5 -2.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_19820 -4.5 -5.3 histidine kinase compare
PS417_21430 -4.5 -1.9 3-oxoacyl-ACP synthase compare
PS417_27300 -4.5 -0.8 cell division protein ZapA compare
PS417_02415 -4.5 -4.4 phosphoserine phosphatase compare
PS417_02005 -4.4 -10.9 glutamate synthase compare
PS417_19835 -4.4 -1.2 flagellar biosynthesis protein FliS compare
PS417_04475 -4.4 -3.8 hypothetical protein compare
PS417_06375 -4.4 -0.8 deoxycytidine triphosphate deaminase compare
PS417_16490 -4.4 -1.2 cell division protein FtsK compare
PS417_21480 -4.4 -1.4 23S rRNA pseudouridylate synthase compare
PS417_05975 -4.2 -0.8 chemotaxis protein CheW compare
PS417_08170 -4.2 -10.7 capsular biosynthesis protein compare
PS417_19840 -4.2 -6.3 flagellar cap protein FliD compare
PS417_23995 -4.2 -0.8 preprotein translocase subunit SecG compare
PS417_27870 -4.1 -3.2 ATP-dependent DNA helicase RecG compare
PS417_19705 -4.1 -2.4 flagellar biosynthesis regulator FlhF compare
PS417_25710 -4.1 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_20160 -4.1 -3.5 cysteine synthase compare
PS417_17215 -4.1 -3.2 peptidylprolyl isomerase compare
PS417_28450 -4.0 -2.3 XRE family transcriptional regulator compare
PS417_08685 -3.9 -1.0 flagellar hook-length control protein FliK compare
PS417_04590 -3.9 -7.3 methyltransferase compare
PS417_23110 -3.9 -5.8 2-isopropylmalate synthase compare
PS417_02655 -3.9 -9.1 amino acid ABC transporter substrate-binding protein compare
PS417_22775 -3.9 -10.3 histidine kinase compare
PS417_02440 -3.9 -2.4 flagellar motor protein MotB compare
PS417_02000 -3.9 -12.8 glutamate synthase compare
PS417_18070 -3.9 -1.0 general secretion pathway protein GspH compare
PS417_22450 -3.8 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_23385 -3.8 -7.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_23390 -3.8 -7.8 ubiquinol oxidase subunit II compare
PS417_18530 -3.8 -2.9 O-succinylhomoserine sulfhydrylase compare
PS417_09725 -3.8 -7.3 transporter compare
PS417_01580 -3.8 -1.0 imidazole glycerol phosphate synthase compare
PS417_09085 -3.7 -1.0 hypothetical protein compare
PS417_27195 -3.7 -1.0 N-acetylglutamate synthase compare
PS417_26240 -3.7 -2.1 N-methylproline demethylase compare
PS417_27795 -3.7 -0.7 orotate phosphoribosyltransferase compare
PS417_22445 -3.7 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_00510 -3.6 -1.0 membrane protein compare
PS417_26985 -3.6 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12310 -3.6 -8.6 methionine synthase compare
PS417_02675 -3.6 -3.5 ABC transporter ATP-binding protein compare
PS417_08580 -3.6 -6.5 histidine kinase compare
PS417_27585 -3.6 -1.6 diaminopimelate epimerase compare
PS417_05815 -3.5 -4.7 recombinase RecA compare
PS417_10965 -3.5 -8.0 chemotaxis protein compare
PS417_17610 -3.5 -1.6 AsnC family transcriptional regulator compare
PS417_08220 -3.5 -0.9 epimerase compare
PS417_04305 -3.5 -0.9 aspartate ammonia-lyase compare
PS417_03560 -3.5 -1.3 GTP-binding protein compare
PS417_28080 -3.4 -9.5 phosphate ABC transporter permease compare
PS417_18310 -3.4 -1.1 hypothetical protein compare
PS417_13870 -3.4 -4.0 hypothetical protein compare
PS417_19865 -3.4 -4.6 flagellar hook protein FlgK compare
PS417_19600 -3.3 -0.9 exonuclease compare
PS417_20610 -3.3 -0.9 hypothetical protein compare
PS417_19830 -3.3 -2.2 flagellar assembly protein FliT compare
PS417_23380 -3.3 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_08125 -3.3 -0.6 prephenate dehydratase compare
PS417_08245 -3.3 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_05575 -3.2 -10.8 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_26890 -3.2 -3.6 dihydroxy-acid dehydratase compare
PS417_04585 -3.2 -1.0 hypothetical protein compare
PS417_13510 -3.2 -1.0 polyketide cyclase compare
PS417_04275 -3.2 -13.1 hypothetical protein compare
PS417_23370 -3.2 -5.3 protoheme IX farnesyltransferase compare
PS417_01990 -3.1 -3.4 cell division protein compare
PS417_24705 -3.1 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_07575 -3.0 -3.3 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27940 -3.0 -1.6 type VI secretion protein compare
PS417_20090 -3.0 -7.6 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_02270 -3.0 -3.7 carbamoyltransferase compare
PS417_04385 -3.0 -2.9 organic solvent ABC transporter substrate-binding protein compare
PS417_10810 -2.9 -2.0 hypothetical protein compare
PS417_26120 -2.9 -2.1 hypothetical protein compare
PS417_01915 -2.9 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02665 -2.9 -8.8 branched-chain amino acid ABC transporter permease compare
PS417_23135 -2.9 -1.5 GTP-binding protein compare
PS417_12005 -2.9 -2.1 hypothetical protein compare
PS417_08540 -2.9 -1.8 RNA helicase compare
PS417_08200 -2.9 -3.2 hypothetical protein compare
PS417_14725 -2.9 -4.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_02660 -2.9 -9.4 branched-chain amino acid transporter permease subunit LivH compare
PS417_13075 -2.8 -1.5 hypothetical protein compare
PS417_21030 -2.8 -4.6 GntR family transcriptional regulator compare
PS417_14730 -2.7 -7.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_21095 -2.7 -5.6 membrane protein compare
PS417_21100 -2.7 -9.6 alpha-L-glutamate ligase compare
PS417_02175 -2.7 -2.0 transcriptional regulator compare
PS417_27520 -2.7 -3.6 uroporphyrin-III methyltransferase compare
PS417_22190 -2.7 -7.7 diguanylate cyclase compare
PS417_03385 -2.7 -1.2 flavin reductase compare
PS417_04375 -2.6 -1.4 ABC transporter ATP-binding protein compare
PS417_22780 -2.6 -1.9 XRE family transcriptional regulator compare
PS417_09705 -2.6 -3.8 hypothetical protein compare
PS417_03260 -2.6 -0.9 5S ribosomal RNA compare


Specific Phenotypes

For 24 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 across organisms