Experiment set18IT032 for Pseudomonas putida KT2440

Compare to:

Growth at 30C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0122 -6.9 -3.5 conserved exported protein of unknown function compare
PP_5701 -6.3 -2.5 conserved protein of unknown function compare
PP_4678 -6.0 -16.6 Ketol-acid reductoisomerase compare
PP_3880 -6.0 -1.3 conserved exported protein of unknown function compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_4832 -5.9 -5.4 Precorrin-6x reductase compare
PP_2309 -5.7 -1.3 conserved protein of unknown function compare
PP_5289 -5.7 -3.8 Acetylglutamate kinase compare
PP_5508 -5.6 -1.3 conserved protein of unknown function compare
PP_1568 -5.6 -1.3 conserved protein of unknown function compare
PP_3052 -5.4 -1.2 conserved protein of unknown function compare
PP_3365 -5.3 -1.2 Acetolactate synthase compare
PP_4680 -5.2 -14.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1912 -5.2 -3.6 Phosphate acyltransferase compare
PP_2088 -5.2 -2.8 RNA polymerase sigma factor SigX compare
PP_1269 -5.2 -1.2 Universal stress protein family compare
PP_4679 -5.2 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -5.1 -9.6 Imidazoleglycerol-phosphate dehydratase compare
PP_3064 -5.1 -2.9 Phage tail protein compare
PP_0022 -5.0 -1.1 hypothetical protein compare
PP_0291 -4.9 -4.4 conserved protein of unknown function compare
PP_0593 -4.7 -1.0 putative ribosome-binding factor compare
PP_1362 -4.6 -3.2 pyruvate kinase II compare
PP_0967 -4.6 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4829 -4.5 -3.6 putative precorrin-3B synthase compare
PP_1898 -4.5 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_t29 -4.4 -1.9 tRNA-Ala compare
PP_0290 -4.4 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1344 -4.3 -1.9 conserved protein of unknown function compare
PP_1079 -4.2 -4.1 Ornithine carbamoyltransferase compare
PP_5128 -4.2 -6.5 Dihydroxy-acid dehydratase compare
PP_0888 -4.1 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1985 -4.1 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_4902 -4.1 -2.6 Oligoribonuclease compare
PP_1988 -4.1 -6.3 3-isopropylmalate dehydrogenase compare
PP_1679 -4.1 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3999 -4.1 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4804 -4.1 -2.8 RlpA-like lipoprotein compare
PP_0846 -4.0 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_4828 -4.0 -1.3 Precorrin-8X methylmutase compare
PP_0232 -3.9 -1.2 ATP-binding taurine transporter subunit compare
PP_0421 -3.9 -5.0 Anthranilate phosphoribosyltransferase compare
PP_4696 -3.9 -6.5 Nitrogen regulation protein NR(I) compare
PP_5347 -3.9 -7.9 pyruvate carboxylase subunit A compare
PP_5456 -3.8 -1.2 conserved protein of unknown function compare
PP_0420 -3.8 -6.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -3.7 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_0083 -3.7 -5.8 tryptophan synthase beta chain compare
PP_0965 -3.7 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5475 -3.7 -1.2 conserved protein of unknown function compare
PP_2378 -3.7 -2.6 Fe/S biogenesis protein NfuA compare
PP_4909 -3.7 -6.3 phosphoserine phosphatase compare
PP_1231 -3.7 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0184 -3.6 -5.9 Argininosuccinate lyase compare
PP_4364 -3.6 -2.7 putative Anti-sigma F factor antagonist compare
PP_2388 -3.6 -2.7 Transporter, LysE family compare
PP_5098 -3.6 -5.4 methionine biosynthesis protein MetW compare
PP_1088 -3.5 -8.2 Argininosuccinate synthase compare
PP_5303 -3.5 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5491 -3.5 -3.3 conserved protein of unknown function with SEC-C motif domain compare
PP_5346 -3.5 -5.7 pyruvate carboxylase subunit B compare
PP_1654 -3.4 -3.9 cysteine synthase B compare
PP_4890 -3.4 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -3.4 -4.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -3.3 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4129 -3.3 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4122 -3.2 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1022 -3.2 -6.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0966 -3.2 -6.3 Histidinol dehydrogenase compare
PP_4126 -3.1 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_1004 -3.1 -2.6 conserved protein of unknown function compare
PP_5748 -3.1 -0.9 cytochrome c heme lyase subunit compare
PP_0362 -3.0 -6.2 Biotin synthase compare
PP_2327 -3.0 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4874 -3.0 -1.3 50S ribosomal protein L9 compare
PP_1995 -3.0 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5348 -3.0 -4.4 Transcriptional regulator, LysR family compare
PP_2337 -2.9 -2.7 aconitate isomerase compare
PP_2168 -2.9 -5.8 Transaldolase compare
PP_2328 -2.8 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_2215 -2.8 -3.9 acetyl-CoA acetyltransferase compare
PP_3417 -2.8 -3.4 D-gluconate transporter compare
PP_5017 -2.8 -1.1 Sec-independent protein translocase protein TatB compare
PP_5014 -2.8 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4782 -2.7 -2.9 Phosphomethylpyrimidine kinase compare
PP_2880 -2.7 -2.1 Transcriptional regulator, TetR family compare
PP_5015 -2.7 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0363 -2.7 -6.4 8-amino-7-oxononanoate synthase compare
PP_4699 -2.7 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0787 -2.7 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4785 -2.7 -4.3 conserved exported protein of unknown function compare
PP_3522 -2.7 -2.8 conserved protein of unknown function compare
PP_0417 -2.7 -8.3 Anthranilate synthase component 1 compare
PP_4826 -2.6 -4.6 Precorrin-3B C17-methyltransferase compare
PP_4697 -2.6 -3.2 poly(A) polymerase compare
PP_2001 -2.6 -4.9 O-succinylhomoserine sulfhydrylase compare
PP_0365 -2.6 -4.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2341 -2.5 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0035 -2.5 -2.7 putative bactoprenol-linked glycose transferase compare
PP_0945 -2.5 -1.8 conserved protein of unknown function compare
PP_1038 -2.5 -1.5 conserved protein of unknown function compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_4143 -2.4 -2.3 conserved protein of unknown function compare
PP_5095 -2.4 -1.1 pyrroline-5-carboxylate reductase compare
PP_5203 -2.4 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_5097 -2.4 -6.0 homoserine O-acetyltransferase compare
PP_4546 -2.4 -3.2 ATP-dependent helicase HrpA compare
PP_5143 -2.3 -1.7 conserved membrane protein of unknown function compare
PP_2371 -2.3 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -2.3 -5.4 2-isopropylmalate synthase compare
PP_2370 -2.2 -2.0 conserved protein of unknown function compare
PP_2029 -2.2 -1.7 von Willebrand factor type A domain protein compare
PP_0366 -2.2 -2.9 dethiobiotin synthetase compare
PP_4098 -2.2 -1.6 UvrABC system protein C compare
PP_4503 -2.2 -2.0 DNA-binding response regulator compare
PP_2336 -2.2 -4.4 aconitate hydratase 1 compare
PP_1208 -2.1 -1.6 conserved protein of unknown function, SlyX family compare
PP_4830 -2.1 -3.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_4848 -2.1 -1.2 Curved DNA-binding protein compare
PP_4961 -2.1 -1.4 putative Lipoprotein compare
PP_2163 -2.1 -3.3 VacJ lipoprotein compare
PP_0422 -2.0 -3.1 Indole-3-glycerol phosphate synthase compare
PP_4471 -2.0 -2.9 Magnesium transporter compare
PP_0999 -2.0 -2.4 carbamate kinase compare
PP_3241 -2.0 -1.2 conserved exported protein of unknown function compare
PP_0949 -2.0 -4.0 putative ATP-binding protein UPF0042 compare
PP_4124 -2.0 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_0393 -2.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3730 -2.0 -1.5 Transcriptional regulatory protein AruR compare
PP_1986 -2.0 -1.7 3-isopropylmalate dehydratase small subunit compare
PP_0874 -1.9 -1.1 conserved protein of unknown function compare
PP_1632 -1.9 -1.2 conserved protein of unknown function compare
PP_5217 -1.9 -5.2 Polyphosphate kinase compare
PP_3164 -1.9 -1.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3919 -1.9 -3.2 conserved protein of unknown function compare
PP_1214 -1.9 -1.8 putative transcriptional regulatory protein compare
PP_3924 -1.9 -2.3 conserved protein of unknown function compare
PP_5640 -1.9 -2.1 conserved protein of unknown function compare
PP_1677 -1.8 -3.0 Adenosyl-cobyric acid synthase compare
PP_4642 -1.8 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_4937 -1.8 -2.7 toluene tolerance protein compare
PP_5028 -1.8 -3.0 proline iminopeptidase compare
PP_t11 -1.8 -1.8 tRNA-Lys compare
PP_0630 -1.7 -0.9 DNA gyrase inhibitor YacG compare
PP_4480 -1.7 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_5198 -1.7 -2.0 conserved protein of unknown function compare
PP_0153 -1.7 -1.2 hypothetical protein compare
PP_5227 -1.7 -4.2 diaminopimelate decarboxylase compare
PP_2302 -1.7 -3.3 DNA-binding, ATP-dependent protease compare
PP_3035 -1.7 -1.9 conserved protein of unknown function compare
PP_4693 -1.7 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_5279 -1.7 -2.0 conserved protein of unknown function compare
PP_4994 -1.7 -2.2 conserved protein of unknown function compare
PP_4984 -1.7 -3.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3286 -1.7 -3.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4701 -1.6 -0.8 glucose-6-phosphate isomerase compare
PP_4827 -1.6 -4.3 Precorrin-2 C(20)-methyltransferase compare
PP_0719 -1.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2345 -1.6 -1.1 conserved exported protein of unknown function compare
PP_1826 -1.6 -1.2 Hydrolase, isochorismatase family compare
PP_2922 -1.6 -1.8 Urea amidolyase-related protein compare
PP_0087 -1.6 -1.1 conserved exported protein of unknown function compare
PP_1673 -1.6 -3.0 cobyrinate a,c-diamide synthase compare
PP_5331 -1.6 -1.6 Long-chain acyl-CoA thioester hydrolase compare
PP_2409 -1.6 -2.3 cobalt-zinc-cadmium resistance protein compare
PP_t13 -1.6 -1.1 tRNA-Lys compare
PP_4263 -1.5 -2.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4499 -1.5 -2.3 putative maturation enzyme compare
PP_0364 -1.5 -3.2 pimeloyl-[acp] methyl ester esterase compare
PP_2616 -1.5 -1.2 conserved protein of unknown function compare
PP_4109 -1.5 -0.9 conserved protein of unknown function compare
PP_2969 -1.5 -2.5 putative repressor of copper utilisation proteins compare
PP_1664 -1.5 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4824 -1.5 -4.0 Sensor histidine kinase/response regulator compare
PP_1633 -1.5 -2.4 conserved exported protein of unknown function compare
PP_2375 -1.5 -5.3 cobalamin-dependent methionine synthase compare
PP_3899 -1.5 -1.7 conserved protein of unknown function, hicB family compare
PP_2675 -1.5 -1.3 Cytochrome c-type protein compare
PP_2196 -1.5 -1.2 agmatinase compare
PP_4977 -1.5 -3.5 5,10-methylenetetrahydrofolate reductase compare
PP_1396 -1.4 -2.8 conserved protein of unknown function compare
PP_2619 -1.4 -2.3 FHA domain protein compare
PP_1674 -1.4 -1.8 5,6-dimethylbenzimidazole synthase compare
PP_1676 -1.4 -2.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5248 -1.4 -1.2 putative hydrolase compare
PP_4681 -1.4 -1.8 conserved protein of unknown function compare
PP_0923 -1.4 -2.4 Acyltransferase compare
PP_1366 -1.4 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1348 -1.4 -2.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0484 -1.4 -2.6 transporter of an unknown substrate compare
PP_4356 -1.4 -2.4 Flagellar protein FliO compare
PP_4913 -1.3 -1.6 conserved protein of unknown function compare
PP_1346 -1.3 -2.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1096 -1.3 -0.9 putative electron transport complex protein compare
PP_4004 -1.3 -1.5 DNA translocase FtsK compare
PP_5329 -1.3 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5001 -1.3 -1.3 protease HslVU, ATPase component compare
PP_5583 -1.3 -1.1 conserved protein of unknown function compare
PP_1233 -1.3 -1.9 sulfurtransferase compare
PP_3341 -1.3 -1.8 nickel-responsive regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms