Experiment set18IT032 for Pseudomonas putida KT2440

Compare to:

Growth at 30C; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_3392 +1.7 1.0 conserved protein of unknown function compare
PP_3484 +1.5 3.6 Response regulator receiver protein compare
PP_1041 +1.5 3.2 twin arginine protein export complex subunit compare
PP_0319 +1.5 1.0 conserved protein of unknown function compare
PP_1623 +1.4 8.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_3726 +1.3 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_5654 +1.3 1.8 putative phosphotriesterase compare
PP_0556 +1.3 3.0 Acetoin catabolism protein compare
PP_4133 +1.2 2.8 Transcriptional regulator-related protein compare
PP_2387 +1.2 2.4 conserved protein of unknown function compare
PP_1713 +1.2 2.3 Transcriptional regulator PcaQ compare
PP_4925 +1.2 3.2 conserved protein of unknown function compare
PP_5140 +1.2 2.7 Transcriptional regulator, MerR family compare
PP_3519 +1.2 1.3 putative Lipoprotein compare
PP_0948 +1.2 1.8 Phosphocarrier protein HPr compare
PP_4253 +1.2 2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_3903 +1.2 1.8 conserved protein of unknown function compare
PP_4262 +1.2 1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1164 +1.2 1.2 Transcriptional regulator, LysR family compare
PP_3110 +1.1 1.2 protein of unknown function compare
PP_1186 +1.1 1.6 two component system DNA-binding transcriptional dual regulator compare
PP_0896 +1.1 3.3 Carbon-nitrogen hydrolase family protein compare
PP_2253 +1.1 1.2 Transcriptional regulator, GntR family compare
PP_1410 +1.1 1.0 conserved protein of unknown function compare
PP_3930 +1.1 1.7 conserved exported protein of unknown function compare
PP_1683 +1.1 1.4 Transcriptional regulator, MarR family compare
PP_5717 +1.1 1.3 conserved protein of unknown function compare
PP_5216 +1.1 1.5 exopolyphosphatase compare
PP_5582 +1.1 1.3 conserved protein of unknown function compare
PP_2568 +1.0 1.2 Ring-cleaving dioxygenase compare
PP_4094 +1.0 2.1 conserved protein of unknown function compare
PP_4273 +1.0 1.3 Transcriptional regulator, MerR family compare
PP_4743 +1.0 2.4 conserved protein of unknown function compare
PP_4669 +1.0 1.5 OmpA family protein compare
PP_2280 +1.0 2.5 conserved protein of unknown function compare
PP_2899 +1.0 1.1 conserved exported protein of unknown function compare
PP_5666 +1.0 3.0 putative microcin B17-like processing protein, McbB family compare
PP_5519 +1.0 2.4 conserved protein of unknown function of phage origin compare
PP_5022 +1.0 1.8 Glutamine transport ATP-binding protein GlnQ compare
PP_5110 +1.0 1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1042 +0.9 2.1 Type II secretion system protein K compare
PP_3715 +0.9 1.6 Muconate cycloisomerase 1 compare
PP_5093 +0.9 1.4 twitching motility protein compare
PP_4449 +0.9 1.5 conserved protein of unknown function compare
PP_4296 +0.9 0.6 conserved exported protein of unknown function compare
PP_5240 +0.9 1.4 Response regulator compare
PP_4247 +0.9 1.3 Exonuclease compare
PP_2331 +0.9 2.8 conserved membrane protein of unknown function compare
PP_3770 +0.9 1.5 conserved protein of unknown function compare
PP_5704 +0.9 1.8 conserved protein of unknown function compare
PP_2622 +0.9 2.8 conserved protein of unknown function compare
PP_3398 +0.9 1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1998 +0.9 4.0 putative cell division protein compare
PP_2189 +0.9 1.6 conserved protein of unknown function compare
PP_3591 +0.9 1.9 Delta 1-piperideine-2-carboxylate reductase compare
PP_2668 +0.9 0.8 ABC efflux transporter, ATP-binding protein compare
PP_1502 +0.9 3.2 OmpA family protein compare
PP_3883 +0.9 1.1 putative Phage holin compare
PP_4519 +0.8 5.5 Agglutination protein compare
PP_2229 +0.8 1.8 putative K(+)/H(+) antiporter subunit C compare
PP_0916 +0.8 1.0 Amino acid transporter LysE compare
PP_1575 +0.8 1.6 conserved protein of unknown function compare
PP_3105 +0.8 0.9 conserved membrane protein of unknown function compare
PP_2462 +0.8 1.4 conserved protein of unknown function compare
PP_5529 +0.8 2.1 putative epimerase compare
PP_1979 +0.8 1.7 putative Hydrolase compare
PP_1829 +0.8 1.3 Hydrolase, alpha/beta fold family compare
PP_1605 +0.8 1.1 Ribonuclease HII compare
PP_2442 +0.8 0.6 conserved protein of unknown function, DUF480 family compare
PP_1099 +0.8 1.6 Cold shock protein CapB compare
PP_3942 +0.8 1.8 maleate isomerase compare
PP_4054 +0.8 1.6 conserved protein of unknown function compare
PP_3766 +0.8 1.9 Lactoylglutathione lyase compare
PP_4337 +0.8 2.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5556 +0.8 2.1 putative bacteriophage lysis protein compare
PP_2401 +0.8 3.0 conserved membrane protein of unknown function compare
PP_4373 +0.8 5.3 Transcriptional regulator FleQ compare
PP_0332 +0.8 1.9 putative Acyltransferase compare
PP_1124 +0.8 1.7 conserved membrane protein of unknown function compare
PP_0972 +0.8 2.0 UPF0213 protein PP_0972 compare
PP_4879 +0.8 1.7 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5659 +0.8 1.9 protein of unknown function compare
PP_2373 +0.8 1.1 conserved protein of unknown function compare
PP_3449 +0.8 0.8 conserved exported protein of unknown function compare
PP_3840 +0.8 1.0 conserved protein of unknown function compare
PP_3051 +0.8 1.6 Pyocin R2_PP, tail spike protein compare
PP_0893 +0.8 1.2 ThiJ/PfpI family protein compare
PP_2927 +0.8 1.8 conserved protein of unknown function compare
PP_1325 +0.8 2.8 putative lipoprotein compare
PP_5423 +0.8 0.9 conserved membrane protein of unknown function compare
PP_2615 +0.8 1.2 hemolysin-coregulated protein compare
PP_4504 +0.8 1.0 conserved exported protein of unknown function compare
PP_2737 +0.8 1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5145 +0.7 5.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3043 +0.7 0.8 conserved protein of unknown function compare
PP_5586 +0.7 1.5 exported protein of unknown function compare
PP_0984 +0.7 1.4 conserved membrane protein of unknown function compare
PP_3891 +0.7 1.6 conserved protein of unknown function compare
PP_1729 +0.7 0.5 conserved protein of unknown function compare
PP_2306 +0.7 1.4 conserved exported protein of unknown function compare
PP_4385 +0.7 2.7 flagellar basal-body rod protein FlgG compare
PP_0398 +0.7 1.7 Thiosulfate sulfurtransferase GlpE compare
PP_5241 +0.7 0.8 DNA-binding response regulator, LuxR family compare
PP_4820 +0.7 2.5 tRNA-dihydrouridine synthase B compare
PP_1404 +0.7 1.0 conserved protein of unknown function compare
PP_5575 +0.7 1.1 conserved protein of unknown function compare
PP_1544 +0.7 1.1 conserved protein of unknown function compare
PP_1062 +0.7 1.6 MutT/nudix family protein compare
PP_4317 +0.7 0.9 conserved protein of unknown function compare
PP_1237 +0.7 0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2715 +0.7 1.4 ArsH protein compare
PP_4910 +0.7 1.1 conserved protein of unknown function compare
PP_2960 +0.7 1.8 transcriptional regulator, AraC family compare
PP_1512 +0.7 1.2 conserved protein of unknown function compare
PP_1045 +0.7 0.5 Type II secretion pathway protein XcpP compare
PP_2400 +0.7 2.2 conserved protein of unknown function compare
PP_2581 +0.7 0.8 conserved protein of unknown function compare
PP_3989 +0.7 1.8 DNA-cytosine methyltransferase compare
PP_1455 +0.7 2.2 conserved protein of unknown function compare
PP_1071 +0.7 2.0 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_5487 +0.7 1.0 conserved protein of unknown function compare
PP_1827 +0.7 1.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_0503 +0.7 1.7 Major facilitator family transporter compare
PP_2238 +0.7 2.7 putative metallopeptidase compare
PP_5488 +0.7 1.6 conserved protein of unknown function compare
PP_5600 +0.7 1.6 conserved protein of unknown function compare
PP_0278 +0.7 1.1 conserved protein of unknown function compare
PP_3209 +0.7 2.8 Isoxanthopterin deaminase compare
PP_2580 +0.7 0.9 conserved protein of unknown function compare
PP_3353 +0.7 1.8 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_5674 +0.7 1.6 conserved protein of unknown function compare
PP_3531 +0.7 2.1 conserved exported protein of unknown function compare
PP_1093 +0.7 2.0 putative electron transport complex protein compare
PP_3877 +0.7 1.7 conserved protein of unknown function compare
PP_0804 +0.7 2.7 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0166 +0.7 4.5 HlyD family secretion protein compare
PP_1787 +0.7 1.2 conserved protein of unknown function compare
PP_1215 +0.7 0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_0001 +0.7 0.5 probable chromosome-partitioning protein compare
PP_2355 +0.7 2.1 Response regulator receiver protein compare
PP_1523 +0.7 2.2 conserved protein of unknown function compare
PP_3243 +0.7 1.6 Acetyltransferase, GNAT family compare
PP_5494 +0.6 2.6 protein of unknown function compare
PP_0805 +0.6 2.9 Outer membrane efflux protein compare
PP_3941 +0.6 1.8 maleamate amidohydrolase compare
PP_0168 +0.6 5.2 putative surface adhesion protein compare
PP_5525 +0.6 1.4 conserved exported protein of unknown function compare
PP_4633 +0.6 1.8 conserved protein of unknown function, DUF1244 family compare
PP_3372 +0.6 2.3 CpxR-Pasp DNA-binding transcriptional two-component system regulator compare
PP_4597 +0.6 1.8 Cyclic pyranopterin monophosphate synthase compare
PP_2291 +0.6 1.1 conserved protein of unknown function compare
PP_3404 +0.6 1.7 conserved protein of unknown function compare
PP_3231 +0.6 2.3 conserved protein of unknown function compare
PP_1415 +0.6 1.8 putative membrane associated enzyme subunit compare
PP_2186 +0.6 0.8 putative Formate dehydrogenase, delta subunit compare
PP_1147 +0.6 1.0 conserved protein of unknown function compare
PP_5448 +0.6 1.3 conserved protein of unknown function compare
PP_3758 +0.6 2.0 Response regulator/sensor histidine kinase compare
PP_0274 +0.6 0.9 putative transcriptional regulator containing HTH domain compare
PP_5174 +0.6 2.1 Efflux membrane fusion protein, RND family compare
PP_5083 +0.6 0.8 putative Type IV pili biogenesis protein PilM compare
PP_4904 +0.6 2.2 Flagellar motor rotation protein compare
PP_0353 +0.6 1.5 Exonuclease compare
PP_5327 +0.6 1.3 putative phosphate ABC transporter, permease subunit compare
PP_1779 +0.6 2.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1417 +0.6 1.4 putative Tricarboxylate transport protein TctB compare
PP_4625 +0.6 1.7 anti-holin regulator of holin CidA compare
PP_1546 +0.6 1.3 conserved protein of unknown function compare
PP_5367 +0.6 2.1 Transketolase domain protein compare
PP_3201 +0.6 1.4 BNR domain protein compare
PP_0119 +0.6 1.1 putative zinc uptake regulation protein ZUR compare
PP_0959 +0.6 0.6 phospholipid ABC transporter compare
PP_1113 +0.6 3.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3749 +0.6 1.3 conserved protein of unknown function compare
PP_4343 +0.6 1.8 Flagellar biosynthesis protein FlhF compare
PP_1813 +0.6 1.0 ComEA-related protein compare
PP_3898 +0.6 1.2 conserved protein of unknown function compare
PP_2684 +0.6 1.4 conserved membrane protein of unknown function compare
PP_0803 +0.6 2.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1943 +0.6 1.7 formyltetrahydrofolate deformylase compare
PP_4814 +0.6 0.8 ATP-dependent protease La domain protein compare
PP_3020 +0.6 0.6 putative Serine/threonine protein phosphatase compare
PP_1630 +0.6 1.9 Regulatory protein RecX compare
PP_2498 +0.6 2.1 conserved protein of unknown function compare
PP_4483 +0.6 2.1 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_4907 +0.6 1.6 Thiosulfate sulfurtransferase compare
PP_4073 +0.6 0.7 conserved exported protein of unknown function compare
PP_4368 +0.6 2.1 flagellar motor switch protein compare
PP_5039 +0.6 1.2 conserved protein of unknown function compare
PP_3034 +0.6 1.6 putative Regulator protein compare
PP_3854 +0.6 2.1 Lysozyme compare
PP_1268 +0.6 1.2 putative HtrA suppressor protein sohA compare
PP_4957 +0.6 1.2 conserved protein of unknown function compare
PP_5125 +0.6 2.6 Formamidopyrimidine-DNA glycosylase compare
PP_2074 +0.6 1.3 Transcriptional regulator, LysR family compare
PP_4162 +0.6 1.1 conserved membrane protein of unknown function compare
PP_2137 +0.6 0.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_2907 +0.6 0.9 DNA-binding response regulator compare
PP_5441 +0.6 0.6 protein of unknown function compare
PP_5569 +0.6 0.8 protein of unknown function of phage origin compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms