Experiment set18IT031 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.7 -2.7 23S rRNA pseudouridylate synthase compare
PS417_03260 -3.4 -1.4 5S ribosomal RNA compare
PS417_08125 -3.3 -1.1 prephenate dehydratase compare
PS417_01915 -3.1 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23545 -3.0 -2.7 gamma-glutamyl kinase compare
PS417_06375 -3.0 -1.4 deoxycytidine triphosphate deaminase compare
PS417_20785 -2.6 -3.2 transcriptional regulator compare
PS417_06680 -2.2 -8.0 nuclease PIN compare
PS417_24745 -2.2 -2.8 gamma-glutamyl phosphate reductase compare
PS417_23025 -2.2 -6.7 murein transglycosylase compare
PS417_20985 -2.1 -1.4 porin compare
PS417_16490 -1.9 -1.9 cell division protein FtsK compare
PS417_27865 -1.9 -2.0 LysR family transcriptional regulator compare
PS417_23775 -1.8 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_22565 -1.8 -1.0 formyltetrahydrofolate deformylase compare
PS417_21575 -1.8 -9.0 chemotaxis protein compare
PS417_02485 -1.8 -3.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21655 -1.8 -1.4 aspartate kinase compare
PS417_27800 -1.8 -2.1 exodeoxyribonuclease III compare
PS417_00045 -1.7 -2.2 glycerol acyltransferase compare
PS417_21630 -1.7 -2.5 magnesium transporter compare
PS417_21430 -1.7 -2.7 3-oxoacyl-ACP synthase compare
PS417_24500 -1.7 -1.7 DEAD/DEAH box helicase compare
PS417_18310 -1.6 -2.1 hypothetical protein compare
PS417_26985 -1.6 -5.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06685 -1.6 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_23375 -1.6 -1.8 cytochrome C oxidase compare
PS417_27870 -1.6 -3.5 ATP-dependent DNA helicase RecG compare
PS417_27795 -1.6 -0.9 orotate phosphoribosyltransferase compare
PS417_00755 -1.5 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_08135 -1.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22520 -1.5 -1.8 histidine kinase compare
PS417_02415 -1.5 -3.7 phosphoserine phosphatase compare
PS417_26730 -1.5 -0.6 pyrroline-5-carboxylate reductase compare
PS417_06205 -1.5 -7.2 methionine aminopeptidase compare
PS417_01850 -1.5 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17215 -1.5 -3.4 peptidylprolyl isomerase compare
PS417_19650 -1.4 -4.3 chemotaxis protein CheW compare
PS417_12805 -1.4 -7.1 glycogen branching protein compare
PS417_12660 -1.4 -2.2 hypothetical protein compare
PS417_16555 -1.4 -1.9 cupin compare
PS417_02975 -1.4 -4.7 3-dehydroquinate dehydratase compare
PS417_06200 -1.4 -4.7 protein-PII uridylyltransferase compare
PS417_03560 -1.3 -1.8 GTP-binding protein compare
PS417_01920 -1.3 -1.0 ATP-dependent protease subunit HslV compare
PS417_01605 -1.3 -1.2 phosphoglycerate mutase compare
PS417_16005 -1.3 -4.8 ATPase compare
PS417_11585 -1.3 -2.4 LuxR family transcriptional regulator compare
PS417_23390 -1.3 -4.5 ubiquinol oxidase subunit II compare
PS417_27040 -1.3 -1.7 3-phosphoglycerate dehydrogenase compare
PS417_04365 -1.3 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19660 -1.3 -5.0 cobalamin biosynthesis protein CobQ compare
PS417_19690 -1.3 -6.8 histidine kinase compare
PS417_01580 -1.2 -1.7 imidazole glycerol phosphate synthase compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_23805 -1.2 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_19720 -1.2 -2.1 DNA-binding protein compare
PS417_26990 -1.2 -0.9 RNA pyrophosphohydrolase compare
PS417_23770 -1.2 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_05815 -1.2 -3.6 recombinase RecA compare
PS417_02555 -1.1 -7.3 exoribonuclease R compare
PS417_23380 -1.1 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_04080 -1.1 -2.6 peptide ABC transporter substrate-binding protein compare
PS417_08540 -1.1 -2.3 RNA helicase compare
PS417_19350 -1.1 -3.5 GTP cyclohydrolase compare
PS417_12855 -1.1 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19675 -1.1 -3.1 chemotaxis protein CheY compare
PS417_01855 -1.1 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_20775 -1.1 -3.5 coproporphyrinogen III oxidase compare
PS417_23810 -1.1 -6.7 acetolactate synthase 3 catalytic subunit compare
PS417_03935 -1.1 -3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_20700 -1.1 -5.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_07170 -1.0 -3.6 hypothetical protein compare
PS417_19520 -1.0 -2.3 transcriptional regulator compare
PS417_07400 -1.0 -1.8 hypothetical protein compare
PS417_19800 -1.0 -2.9 flagellar motor switch protein FliG compare
PS417_20715 -1.0 -1.6 cytochrome Cbb3 compare
PS417_02160 -1.0 -1.2 hypothetical protein compare
PS417_10405 -1.0 -1.3 filamentous hemagglutinin compare
PS417_22570 -1.0 -0.9 H-NS histone compare
PS417_19955 -1.0 -1.6 hypothetical protein compare
PS417_19655 -1.0 -3.5 chemotaxis protein CheW compare
PS417_27085 -1.0 -1.7 AraC family transcriptional regulator compare
PS417_21125 -1.0 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_22375 -1.0 -0.8 cold-shock protein compare
PS417_12005 -1.0 -2.3 hypothetical protein compare
PS417_24155 -1.0 -1.1 ATP-binding protein compare
PS417_24575 -1.0 -1.3 hypothetical protein compare
PS417_23370 -1.0 -3.1 protoheme IX farnesyltransferase compare
PS417_27515 -1.0 -2.5 heme biosynthesis protein HemY compare
PS417_05830 -1.0 -2.4 hypothetical protein compare
PS417_05905 -1.0 -2.2 hypothetical protein compare
PS417_27195 -1.0 -1.1 N-acetylglutamate synthase compare
PS417_23385 -1.0 -5.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_12310 -0.9 -5.6 methionine synthase compare
PS417_01565 -0.9 -3.1 imidazole glycerol phosphate synthase compare
PS417_25315 -0.9 -3.6 membrane protein compare
PS417_27425 -0.9 -4.8 exopolyphosphatase compare
PS417_23910 -0.9 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14590 -0.9 -1.3 LysR family transcriptional regulator compare
PS417_27835 -0.9 -3.5 endoribonuclease compare
PS417_23915 -0.9 -4.2 pantoate--beta-alanine ligase compare
PS417_22445 -0.9 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_26420 -0.9 -1.6 hypothetical protein compare
PS417_18455 -0.9 -2.3 hypothetical protein compare
PS417_17000 -0.9 -1.0 MerR family transcriptional regulator compare
PS417_21210 -0.9 -1.4 amidotransferase compare
PS417_12375 -0.9 -1.9 serine/threonine protein phosphatase compare
PS417_00345 -0.9 -1.6 copper-binding protein compare
PS417_02000 -0.9 -5.3 glutamate synthase compare
PS417_04055 -0.9 -3.4 peptide transporter compare
PS417_18715 -0.8 -4.9 peptidase M4 compare
PS417_15100 -0.8 -2.0 BatB protein compare
PS417_11400 -0.8 -0.8 phosphoglycerate mutase compare
PS417_04390 -0.8 -2.9 toluene tolerance protein compare
PS417_00405 -0.8 -5.0 DNA polymerase I compare
PS417_26370 -0.8 -2.9 RNA helicase compare
PS417_12515 -0.8 -2.5 lactate dehydrogenase compare
PS417_15095 -0.8 -2.6 hypothetical protein compare
PS417_24705 -0.8 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_10840 -0.8 -1.6 amidase compare
PS417_19665 -0.8 -2.5 flagellar motor protein MotD compare
PS417_01375 -0.8 -2.3 hypothetical protein compare
PS417_01575 -0.8 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27245 -0.8 -3.1 aminotransferase DegT compare
PS417_16510 -0.8 -2.6 Clp protease ClpX compare
PS417_19450 -0.8 -3.2 Patatin compare
PS417_26805 -0.8 -0.8 cell division protein FtsE compare
PS417_23105 -0.8 -1.1 hypothetical protein compare
PS417_03100 -0.8 -1.0 pilus assembly protein compare
PS417_08730 -0.8 -1.5 cytochrome C compare
PS417_18450 -0.8 -2.3 hydrolase compare
PS417_02005 -0.8 -4.7 glutamate synthase compare
PS417_24585 -0.8 -4.9 AMP nucleosidase compare
PS417_22895 -0.8 -3.2 tyrosine recombinase XerD compare
PS417_00580 -0.8 -3.0 acyl-CoA dehydrogenase compare
PS417_05065 -0.8 -1.5 hypothetical protein compare
PS417_15105 -0.8 -2.7 membrane protein compare
PS417_12735 -0.8 -1.6 peroxidase compare
PS417_28265 -0.8 -1.4 pyridoxamine kinase compare
PS417_04960 -0.8 -1.4 hypothetical protein compare
PS417_16520 -0.8 -1.2 cold-shock protein compare
PS417_14065 -0.7 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08410 -0.7 -2.1 hypothetical protein compare
PS417_07140 -0.7 -1.1 peptidase M48 compare
PS417_10600 -0.7 -1.4 hypothetical protein compare
PS417_13620 -0.7 -1.4 thermostable hemolysin compare
PS417_15770 -0.7 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_07640 -0.7 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04290 -0.7 -2.6 hypothetical protein compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_23995 -0.7 -0.6 preprotein translocase subunit SecG compare
PS417_04060 -0.7 -3.1 dipeptide ABC transporter, permease component (from data) compare
PS417_09590 -0.7 -2.9 membrane protein compare
PS417_17830 -0.7 -1.5 4-hydroxyphenylacetate isomerase compare
PS417_07710 -0.7 -2.8 membrane protein compare
PS417_18160 -0.7 -1.1 YeeE/YedE compare
PS417_03780 -0.7 -2.4 general secretion pathway protein GspH compare
PS417_27075 -0.7 -1.7 thiol-disulfide isomerase compare
PS417_21425 -0.7 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_12355 -0.7 -1.1 magnesium chelatase compare
PS417_27520 -0.7 -1.6 uroporphyrin-III methyltransferase compare
PS417_27595 -0.7 -1.6 recombinase XerC compare
PS417_08685 -0.7 -1.2 flagellar hook-length control protein FliK compare
PS417_22580 -0.7 -2.2 membrane protein compare
PS417_23825 -0.7 -3.4 penicillin-binding protein compare
PS417_18595 -0.6 -2.6 3-isopropylmalate dehydratase compare
PS417_26835 -0.6 -0.9 3-mercaptopyruvate sulfurtransferase compare
PS417_21850 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_25780 -0.6 -1.1 molecular chaperone DnaJ compare
PS417_14515 -0.6 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_18475 -0.6 -1.4 Pyrrolidone-carboxylate peptidase compare
PS417_22620 -0.6 -2.5 pyruvate kinase compare
PS417_10720 -0.6 -3.6 chemotaxis protein CheY compare
PS417_15085 -0.6 -2.0 ATPase AAA compare
PS417_03380 -0.6 -0.6 hypothetical protein compare
PS417_07615 -0.6 -2.5 TetR family transcriptional regulator compare
PS417_27135 -0.6 -0.4 glutamine synthetase compare
PS417_16370 -0.6 -2.2 chemotaxis protein CheY compare
PS417_08945 -0.6 -3.6 heat shock protein 90 compare
PS417_13660 -0.6 -1.6 AsnC family transcriptional regulator compare
PS417_05040 -0.6 -1.7 amino acid dehydrogenase compare
PS417_12110 -0.6 -0.9 ATP-binding protein compare
PS417_22300 -0.6 -1.0 LTXXQ domain protein compare
PS417_02800 -0.6 -1.2 acetyltransferase compare
PS417_07410 -0.6 -1.8 hypothetical protein compare
PS417_14835 -0.6 -2.0 amidase compare
PS417_00355 -0.6 -1.2 metal ABC transporter permease compare
PS417_22840 -0.6 -1.3 tRNA-Met compare
PS417_04435 -0.6 -3.2 uracil phosphoribosyltransferase compare
PS417_02225 -0.6 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_16715 -0.6 -0.8 DoxX family protein compare
PS417_03815 -0.6 -1.3 DNA transporter compare
PS417_18560 -0.6 -2.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00190 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_28145 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_27910 -0.6 -1.9 PppA compare
PS417_24495 -0.6 -2.3 NAD(FAD)-utilizing dehydrogenase compare
PS417_15200 -0.6 -1.8 protein activator of alkane oxidation PraB compare
PS417_24365 -0.6 -2.2 FAD-binding molybdopterin dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms