Experiment set18IT031 for Pseudomonas putida KT2440

Compare to:

Growth at 30C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1079 -5.6 -7.1 Ornithine carbamoyltransferase compare
PP_1988 -5.2 -9.1 3-isopropylmalate dehydrogenase compare
PP_4890 -5.1 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -4.7 -8.0 Branched-chain-amino-acid aminotransferase compare
PP_4680 -4.6 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.6 -12.4 Ketol-acid reductoisomerase compare
PP_5098 -4.4 -7.6 methionine biosynthesis protein MetW compare
PP_4804 -4.4 -3.0 RlpA-like lipoprotein compare
PP_2402 -4.3 -3.0 putative Sensor histidine kinase compare
PP_5097 -4.2 -11.2 homoserine O-acetyltransferase compare
PP_0290 -4.0 -5.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5347 -4.0 -9.4 pyruvate carboxylase subunit A compare
PP_2378 -4.0 -2.7 Fe/S biogenesis protein NfuA compare
PP_5128 -3.8 -6.7 Dihydroxy-acid dehydratase compare
PP_4696 -3.8 -7.0 Nitrogen regulation protein NR(I) compare
PP_5015 -3.7 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0082 -3.7 -5.5 tryptophan synthase alpha chain compare
PP_5348 -3.6 -7.3 Transcriptional regulator, LysR family compare
PP_0022 -3.6 -1.5 hypothetical protein compare
PP_0083 -3.6 -5.9 tryptophan synthase beta chain compare
PP_3999 -3.6 -10.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2001 -3.6 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_1986 -3.6 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_1985 -3.5 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_1995 -3.4 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5303 -3.4 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4364 -3.4 -3.7 putative Anti-sigma F factor antagonist compare
PP_0967 -3.4 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -3.4 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -3.3 -11.6 Anthranilate synthase component 1 compare
PP_4874 -3.3 -1.9 50S ribosomal protein L9 compare
PP_1088 -3.3 -9.2 Argininosuccinate synthase compare
PP_4909 -3.2 -7.8 phosphoserine phosphatase compare
PP_0366 -3.1 -4.0 dethiobiotin synthetase compare
PP_0292 -3.1 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -3.0 -4.5 Argininosuccinate lyase compare
PP_5346 -3.0 -6.7 pyruvate carboxylase subunit B compare
PP_5155 -3.0 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1898 -2.9 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_1025 -2.9 -8.6 2-isopropylmalate synthase compare
PP_5185 -2.9 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1912 -2.9 -4.9 Phosphate acyltransferase compare
PP_1022 -2.8 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0422 -2.8 -3.8 Indole-3-glycerol phosphate synthase compare
PP_2371 -2.8 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2328 -2.8 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_0965 -2.8 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0293 -2.8 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2327 -2.7 -5.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0364 -2.7 -5.9 pimeloyl-[acp] methyl ester esterase compare
PP_0420 -2.7 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4700 -2.7 -1.9 pantothenate synthetase compare
PP_2168 -2.7 -7.9 Transaldolase compare
PP_4679 -2.7 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1679 -2.6 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5095 -2.6 -1.5 pyrroline-5-carboxylate reductase compare
PP_4785 -2.6 -6.9 conserved exported protein of unknown function compare
PP_5028 -2.5 -5.3 proline iminopeptidase compare
PP_0966 -2.5 -5.4 Histidinol dehydrogenase compare
PP_0421 -2.4 -4.4 Anthranilate phosphoribosyltransferase compare
PP_0365 -2.4 -5.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1231 -2.4 -4.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0362 -2.3 -7.2 Biotin synthase compare
PP_4994 -2.3 -4.4 conserved protein of unknown function compare
PP_5289 -2.3 -2.5 Acetylglutamate kinase compare
PP_4699 -2.3 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1632 -2.3 -1.8 conserved protein of unknown function compare
PP_0291 -2.3 -2.9 conserved protein of unknown function compare
PP_3903 -2.2 -2.6 conserved protein of unknown function compare
PP_0393 -2.2 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5748 -2.1 -1.4 cytochrome c heme lyase subunit compare
PP_5202 -2.1 -2.2 putative cell division protein compare
PP_0164 -2.0 -4.2 conserved protein of unknown function compare
PP_5216 -2.0 -1.3 exopolyphosphatase compare
PP_4964 -1.9 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0673 -1.9 -3.2 conserved protein of unknown function compare
PP_5203 -1.8 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PP_0775 -1.8 -2.2 conserved protein of unknown function compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_4122 -1.8 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0363 -1.7 -6.3 8-amino-7-oxononanoate synthase compare
PP_4480 -1.7 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_1362 -1.7 -3.1 pyruvate kinase II compare
PP_5104 -1.6 -5.1 thiazole synthase compare
PP_4993 -1.6 -2.8 Glutathione synthetase compare
PP_2145 -1.6 -2.1 beta-N-acetylglucosaminidase compare
PP_2903 -1.6 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0787 -1.6 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5310 -1.5 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_0377 -1.5 -1.2 coenzyme PQQ synthesis protein D compare
PP_2336 -1.5 -3.1 aconitate hydratase 1 compare
PP_4984 -1.5 -4.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2370 -1.5 -1.4 conserved protein of unknown function compare
PP_0735 -1.5 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4782 -1.5 -2.5 Phosphomethylpyrimidine kinase compare
PP_3505 -1.4 -1.5 conserved protein of unknown function compare
PP_4826 -1.4 -4.0 Precorrin-3B C17-methyltransferase compare
PP_4120 -1.4 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_5217 -1.4 -5.1 Polyphosphate kinase compare
PP_3417 -1.4 -3.3 D-gluconate transporter compare
PP_1664 -1.4 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5075 -1.4 -6.1 glutamate synthase (NADPH) beta subunit compare
PP_5110 -1.4 -1.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3312 -1.4 -1.7 putative Heat shock protein compare
PP_3926 -1.3 -1.3 short-chain dehydrogenase compare
PP_2103 -1.3 -2.2 conserved protein of unknown function compare
PP_0962 -1.3 -1.9 toluene-tolerance protein compare
PP_4902 -1.3 -1.3 Oligoribonuclease compare
PP_3102 -1.3 -2.1 conserved protein of unknown function compare
PP_4693 -1.3 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_2390 -1.3 -3.7 Transcriptional regulator, LysR family compare
PP_1656 -1.3 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1583 -1.3 -3.0 putative Structural protein P5 compare
PP_2748 -1.3 -2.4 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0152 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5114 -1.2 -1.8 putative adenine methyltransferase compare
PP_5100 -1.2 -3.8 dITP/XTP pyrophosphatase compare
PP_3824 -1.2 -2.4 conserved exported protein of unknown function compare
PP_4707 -1.2 -2.2 OsmY-related protein compare
PP_1233 -1.2 -2.6 sulfurtransferase compare
PP_1733 -1.1 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4131 -1.1 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4977 -1.1 -4.4 5,10-methylenetetrahydrofolate reductase compare
PP_5030 -1.1 -3.0 Imidazolonepropionase compare
PP_0434 -1.1 -2.1 Anhydro-N-acetylmuramic acid kinase compare
PP_5571 -1.1 -1.2 conserved protein of unknown function compare
PP_5706 -1.1 -1.2 Sec translocation complex - SecG subunit compare
PP_4532 -1.1 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5639 -1.1 -3.7 conserved exported protein of unknown function compare
PP_0138 -1.1 -4.8 conserved membrane protein of unknown function compare
PP_3930 -1.1 -1.3 conserved exported protein of unknown function compare
PP_3411 -1.1 -1.0 conserved protein of unknown function compare
PP_0725 -1.1 -2.7 conserved hypothetical TPR repeat protein compare
PP_0065 -1.1 -1.9 NAD-binding component of TrK potassium transporter compare
PP_5014 -1.0 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1654 -1.0 -2.2 cysteine synthase B compare
PP_4824 -1.0 -3.1 Sensor histidine kinase/response regulator compare
PP_2530 -1.0 -1.1 conserved protein of unknown function compare
PP_1655 -1.0 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1673 -1.0 -2.8 cobyrinate a,c-diamide synthase compare
PP_1426 -1.0 -5.0 L-aspartate oxidase compare
PP_0719 -1.0 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1110 -1.0 -1.8 serine acetyltransferase compare
PP_2375 -1.0 -5.6 cobalamin-dependent methionine synthase compare
PP_5423 -1.0 -1.8 conserved membrane protein of unknown function compare
PP_2044 -1.0 -1.3 conserved inner membrane protein of unknown function compare
PP_0547 -1.0 -2.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2999 -1.0 -1.1 Glyoxalase family protein compare
PP_0405 -1.0 -3.7 conserved protein of unknown function compare
PP_0566 -1.0 -0.9 translation-related factor compare
PP_4895 -1.0 -1.6 tRNA dimethylallyltransferase compare
PP_0738 -0.9 -2.8 conserved protein of unknown function compare
PP_4156 -0.9 -1.7 Transcriptional regulator, LysR family compare
PP_1681 -0.9 -4.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2631 -0.9 -1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1938 -0.9 -1.3 conserved protein of unknown function compare
PP_5446 -0.9 -2.6 protein of unknown function compare
PP_2032 -0.9 -2.9 putative ATPase compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_4143 -0.9 -2.1 conserved protein of unknown function compare
PP_4356 -0.9 -1.8 Flagellar protein FliO compare
PP_1217 -0.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5218 -0.9 -2.8 DedA family protein compare
PP_3702 -0.9 -2.9 conserved protein of unknown function compare
PP_4507 -0.9 -3.9 potassium transporter compare
PP_1774 -0.9 -1.7 conserved exported protein of unknown function compare
PP_4827 -0.9 -3.9 Precorrin-2 C(20)-methyltransferase compare
PP_4830 -0.9 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_3876 -0.9 -1.1 conserved protein of unknown function compare
PP_4829 -0.9 -1.7 putative precorrin-3B synthase compare
PP_1979 -0.9 -0.7 putative Hydrolase compare
PP_5048 -0.9 -2.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3507 -0.9 -4.9 Aerobic cobaltochelatase subunit CobN compare
PP_2031 -0.9 -1.3 conserved protein of unknown function compare
PP_0789 -0.9 -1.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5471 -0.9 -1.2 putative response regulator receiver protein compare
PP_3637 -0.9 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2388 -0.9 -1.5 Transporter, LysE family compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_0916 -0.9 -2.1 Amino acid transporter LysE compare
PP_5658 -0.9 -2.1 protein of unknown function compare
PP_3790 -0.9 -3.3 diaminopimelate epimerase compare
PP_4258 -0.8 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_5076 -0.8 -5.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_1206 -0.8 -2.9 basic-amino-acid specific porin OprD compare
PP_2681 -0.8 -1.0 coenzyme PQQ synthesis protein D compare
PP_2929 -0.8 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0961 -0.8 -2.7 toluene tolerance protein compare
PP_0305 -0.8 -3.0 HTH-type transcriptional regulator CdhR compare
PP_3506 -0.8 -1.5 Magnesium chelatase, subunit ChII compare
PP_4695 -0.8 -4.4 Sensory box histidine kinase compare
PP_2550 -0.8 -2.0 putative transcriptional regulatory protein compare
PP_3563 -0.8 -2.0 conserved exported protein of unknown function compare
PP_0254 -0.8 -1.4 conserved protein of unknown function compare
PP_1629 -0.8 -2.4 Protein RecA compare
PP_4419 -0.8 -1.2 transposase compare
PP_5232 -0.8 -1.5 conserved protein of unknown function compare
PP_1589 -0.8 -3.2 uridylyltransferase compare
PP_2520 -0.8 -2.8 conserved protein of unknown function compare
PP_2187 -0.8 -2.1 Universal stress protein family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms