Experiment set18IT027 for Pseudomonas putida KT2440

Compare to:

Growth at 30C

200 most detrimental genes:

  gene name fitness t score description  
PP_1325 +1.7 11.4 putative lipoprotein compare
PP_5084 +1.7 11.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3447 +1.4 2.4 conserved membrane protein of unknown function compare
PP_3411 +1.4 3.0 conserved protein of unknown function compare
PP_0276 +1.4 2.4 Transcriptional regulator, Cro/CI family compare
PP_0048 +1.3 2.5 conserved protein of unknown function compare
PP_1215 +1.2 1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0035 +1.1 2.0 putative bactoprenol-linked glycose transferase compare
PP_1186 +1.1 1.3 two component system DNA-binding transcriptional dual regulator compare
PP_0166 +1.1 9.3 HlyD family secretion protein compare
PP_3773 +1.0 1.8 conserved protein of unknown function compare
PP_4519 +1.0 8.1 Agglutination protein compare
PP_0168 +1.0 9.4 putative surface adhesion protein compare
PP_5329 +1.0 3.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2280 +1.0 2.5 conserved protein of unknown function compare
PP_5748 +1.0 1.6 cytochrome c heme lyase subunit compare
PP_4373 +0.9 8.0 Transcriptional regulator FleQ compare
PP_0805 +0.9 5.8 Outer membrane efflux protein compare
PP_3906 +0.9 2.5 conserved protein of unknown function compare
PP_0401 +0.9 2.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4905 +0.9 4.7 Flagellar motor rotation protein compare
PP_4904 +0.9 5.6 Flagellar motor rotation protein compare
PP_5328 +0.9 2.4 putative phosphate transport system permease protein compare
PP_0803 +0.9 6.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5327 +0.9 3.4 putative phosphate ABC transporter, permease subunit compare
PP_3307 +0.9 1.6 conserved protein of unknown function compare
PP_4769 +0.9 2.6 conserved protein of unknown function compare
PP_5053 +0.9 5.2 Protein-export protein SecB compare
PP_0167 +0.9 7.5 Toxin secretion ATP-binding protein compare
PP_1317 +0.8 2.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3040 +0.8 3.6 Pyocin R2_PP, holin compare
PP_5556 +0.8 3.0 putative bacteriophage lysis protein compare
PP_1428 +0.8 1.1 Sigma factor AlgU negative regulatory protein compare
PP_1113 +0.8 5.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5486 +0.8 2.0 conserved protein of unknown function compare
PP_0806 +0.8 7.4 putative Surface adhesion protein compare
PP_0804 +0.8 4.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1691 +0.8 3.0 conserved protein of unknown function compare
PP_2330 +0.8 2.7 conserved protein of unknown function compare
PP_4271 +0.8 1.0 conserved protein of unknown function compare
PP_1787 +0.8 3.5 conserved protein of unknown function compare
PP_5706 +0.8 2.0 Sec translocation complex - SecG subunit compare
PP_1071 +0.7 4.7 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3903 +0.7 1.3 conserved protein of unknown function compare
PP_4892 +0.7 3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5145 +0.7 6.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2462 +0.7 2.1 conserved protein of unknown function compare
PP_0905 +0.7 1.6 conserved exported protein of unknown function compare
PP_4391 +0.7 3.7 flagellar basal-body rod protein FlgB compare
PP_2633 +0.7 1.3 conserved protein of unknown function compare
PP_3761 +0.7 5.4 Sensor histidine kinase/response regulator compare
PP_4162 +0.7 3.4 conserved membrane protein of unknown function compare
PP_3810 +0.7 1.8 conserved protein of unknown function compare
PP_5338 +0.7 1.9 aspartate ammonia-lyase compare
PP_1048 +0.7 2.6 putative protein secretion protein for export compare
PP_0165 +0.7 5.6 GGDEF domain protein compare
PP_4171 +0.7 6.5 conserved exported protein of unknown function compare
PP_1649 +0.7 1.8 D-lactate dehydrogenase compare
PP_4156 +0.7 1.7 Transcriptional regulator, LysR family compare
PP_5705 +0.7 1.2 protein of unknown function compare
PP_4342 +0.7 1.9 flagellar synthesis regulator, putative ATPase compare
PP_0738 +0.7 1.7 conserved protein of unknown function compare
PP_5298 +0.7 2.2 putative glutamine amidotransferase compare
PP_1930 +0.7 2.2 arsenic resistance transcriptional regulator compare
PP_5583 +0.7 1.5 conserved protein of unknown function compare
PP_3866 +0.6 1.8 conserved protein of unknown function compare
PP_4981 +0.6 1.6 polyisoprene-binding protein, acidic stress response factor compare
PP_1623 +0.6 3.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_5572 +0.6 1.3 protein of unknown function compare
PP_1099 +0.6 1.0 Cold shock protein CapB compare
PP_5456 +0.6 1.1 conserved protein of unknown function compare
PP_5648 +0.6 1.4 conserved exported protein of unknown function compare
PP_0574 +0.6 4.7 DNA-binding response regulator, LuxR family compare
PP_t10 +0.6 1.3 tRNA-Pro compare
PP_1319 +0.6 2.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2291 +0.6 1.6 conserved protein of unknown function compare
PP_4957 +0.6 1.9 conserved protein of unknown function compare
PP_5658 +0.6 2.3 protein of unknown function compare
PP_0937 +0.6 2.7 endoribonuclease G (RNAse G) compare
PP_2889 +0.6 3.4 putative Transmembrane regulator PrtR compare
PP_0999 +0.6 1.6 carbamate kinase compare
PP_2331 +0.6 3.2 conserved membrane protein of unknown function compare
PP_0921 +0.6 1.7 Transcriptional regulator, ArsR family compare
PP_2319 +0.6 2.3 conserved protein of unknown function compare
PP_4669 +0.6 2.0 OmpA family protein compare
PP_2192 +0.6 2.8 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_5617 +0.6 2.0 conserved protein of unknown function compare
PP_3073 +0.6 2.8 3-hydroxybutyrate dehydrogenase compare
PP_1605 +0.6 2.5 Ribonuclease HII compare
PP_0948 +0.6 1.2 Phosphocarrier protein HPr compare
PP_1752 +0.6 2.8 conserved protein of unknown function compare
PP_2689 +0.6 2.9 putative Endoribonuclease compare
PP_1274 +0.6 2.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5218 +0.6 2.0 DedA family protein compare
PP_1038 +0.6 1.3 conserved protein of unknown function compare
PP_3726 +0.6 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_4173 +0.6 3.7 Sensor histidine kinase/response regulator compare
PP_3328 +0.6 1.4 putative Ring-cleaving dioxygenase compare
PP_2723 +0.6 1.8 Uncharacterized oxidoreductase YhdF compare
PP_4517 +0.6 1.0 conserved protein of unknown function compare
PP_0352 +0.6 2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1208 +0.5 1.3 conserved protein of unknown function, SlyX family compare
PP_1109 +0.5 4.7 Transcriptional regulator, GntR family compare
PP_2568 +0.5 0.8 Ring-cleaving dioxygenase compare
PP_4261 +0.5 1.9 cation-transporting P-type ATPase compare
PP_2931 +0.5 1.7 conserved protein of unknown function compare
PP_4256 +0.5 1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2759 +0.5 1.0 ribose ABC transporter - ATP-binding subunit compare
PP_3757 +0.5 1.1 Chemotaxis protein CheY compare
PP_4223 +0.5 1.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0195 +0.5 0.8 conserved protein of unknown function compare
PP_3505 +0.5 1.4 conserved protein of unknown function compare
PP_1004 +0.5 1.3 conserved protein of unknown function compare
PP_1875 +0.5 3.4 Sensor histidine kinase/response regulator compare
PP_4385 +0.5 3.3 flagellar basal-body rod protein FlgG compare
PP_t11 +0.5 1.0 tRNA-Lys compare
PP_2655 +0.5 2.1 conserved protein of unknown function compare
PP_1938 +0.5 1.3 conserved protein of unknown function compare
PP_2672 +0.5 2.0 Transcriptional activator protein ExaE compare
PP_5216 +0.5 1.1 exopolyphosphatase compare
PP_3061 +0.5 1.9 conserved protein of unknown function compare
PP_3434 +0.5 1.5 conserved protein of unknown function compare
PP_1201 +0.5 2.8 conserved exported protein of unknown function conserved
PP_4217 +0.5 4.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5701 +0.5 1.1 conserved protein of unknown function compare
PP_4959 +0.5 3.6 diguanylate cyclase compare
PP_0868 +0.5 2.3 ABC transporter ATP-binding subunit compare
PP_5317 +0.5 1.3 Probable chorismate pyruvate-lyase compare
PP_0607 +0.5 1.6 putative Type IV pili biogenesis protein FimT compare
PP_4503 +0.5 1.6 DNA-binding response regulator compare
PP_5561 +0.5 2.9 conserved protein of unknown function compare
PP_1112 +0.5 3.1 conserved membrane protein of unknown function compare
PP_5502 +0.5 1.6 ribosome modulation factor compare
PP_1415 +0.5 1.6 putative membrane associated enzyme subunit compare
PP_4390 +0.5 3.0 flagellar basal-body rod protein FlgC compare
PP_3197 +0.5 1.2 Glyoxalase family protein compare
PP_5139 +0.5 1.9 cadmium translocating P-type ATPase compare
PP_5170 +0.5 1.4 sulfate ABC transporter, inner membrane subunit CysT compare
PP_5337 +0.5 2.0 LysR family transcriptional regulator compare
PP_2930 +0.5 2.2 putative L-serine dehydratase compare
PP_2132 +0.5 1.6 Universal stress protein compare
PP_1131 +0.5 2.1 outer membrane lipoprotein compare
PP_1147 +0.5 2.1 conserved protein of unknown function compare
PP_0585 +0.5 1.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4901 +0.5 1.6 conserved inner membrane protein compare
PP_3735 +0.5 2.6 ABC transporter ATP-binding protein compare
PP_0173 +0.5 2.4 putative transcriptional factor-related protein compare
PP_1265 +0.5 1.4 conserved protein of unknown function compare
PP_2950 +0.5 2.6 conserved protein of unknown function compare
PP_2408 +0.5 2.6 cobalt-zinc-cadmium resistance protein compare
PP_0711 +0.5 1.1 putative hydrolase compare
PP_4768 +0.5 1.8 Exonuclease compare
PP_0888 +0.5 0.8 Photosynthetic apparatus regulatory protein RegA compare
PP_5516 +0.5 2.3 protein of unknown function compare
PP_2650 +0.5 2.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_3974 +0.5 2.4 Transcriptional regulator, LysR family compare
PP_0414 +0.5 1.9 Polyamine ABC transporter, permease protein compare
PP_1827 +0.5 2.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2497 +0.5 1.4 conserved protein of unknown function compare
PP_3353 +0.5 2.0 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_0400 +0.5 2.0 CO2+/MG2+ efflux protein compare
PP_3831 +0.5 2.6 conserved protein of unknown function compare
PP_1522 +0.5 2.4 major cold shock protein compare
PP_1941 +0.5 1.7 conserved protein of unknown function compare
PP_1207 +0.5 1.4 conserved protein of unknown function compare
PP_2023 +0.5 2.0 Glutathione S-transferase family protein compare
PP_4590 +0.5 2.2 conserved protein of unknown function compare
PP_3850 +0.5 1.7 conserved protein of unknown function compare
PP_1142 +0.5 0.6 conserved protein of unknown function compare
PP_2954 +0.5 1.8 conserved protein of unknown function compare
PP_0355 +0.5 2.0 Response regulator compare
PP_2046 +0.5 1.0 Transcriptional regulator, LysR family compare
PP_1909 +0.5 1.3 putative septum formation protein compare
PP_5423 +0.5 1.1 conserved membrane protein of unknown function compare
PP_5504 +0.5 2.8 conserved protein of unknown function compare
PP_1829 +0.5 1.3 Hydrolase, alpha/beta fold family compare
PP_2572 +0.5 1.6 conserved protein of unknown function compare
PP_3891 +0.5 1.3 conserved protein of unknown function compare
PP_0908 +0.5 2.1 conserved exported protein of unknown function compare
PP_4530 +0.4 2.6 conserved protein of unknown function compare
PP_3672 +0.4 1.6 conserved protein of unknown function compare
PP_3519 +0.4 0.6 putative Lipoprotein compare
PP_5520 +0.4 2.3 conserved protein of unknown function compare
PP_0893 +0.4 1.2 ThiJ/PfpI family protein compare
PP_0509 +0.4 2.5 conserved protein of unknown function compare
PP_4038 +0.4 2.2 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4528 +0.4 0.9 conserved protein of unknown function compare
PP_1007 +0.4 2.9 putative Transmembrane sensor compare
PP_5083 +0.4 1.7 putative Type IV pili biogenesis protein PilM compare
PP_5054 +0.4 0.8 glutaredoxin 3 compare
PP_5021 +0.4 1.8 Methyl-accepting chemotaxis transducer compare
PP_1454 +0.4 1.4 conserved protein of unknown function compare
PP_2866 +0.4 2.0 FMN-dependent NADH-azoreductase 1 compare
PP_2858 +0.4 1.2 conserved exported protein of unknown function compare
PP_3517 +0.4 2.1 conserved exported protein of unknown function compare
PP_5575 +0.4 0.5 conserved protein of unknown function compare
PP_0699 +0.4 1.9 Transporter, LysE family compare
PP_2880 +0.4 0.9 Transcriptional regulator, TetR family compare
PP_2803 +0.4 1.3 1,3-propanediol dehydrogenase compare
PP_0563 +0.4 3.0 Response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments

For temperature D-Glucose across organisms