Experiment set18IT025 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19835 -3.9 -2.1 flagellar biosynthesis protein FliS compare
PS417_27795 -3.8 -1.0 orotate phosphoribosyltransferase compare
PS417_19675 -3.5 -8.7 chemotaxis protein CheY compare
PS417_23545 -3.5 -3.4 gamma-glutamyl kinase compare
PS417_08125 -3.4 -0.9 prephenate dehydratase compare
PS417_19800 -3.3 -4.0 flagellar motor switch protein FliG compare
PS417_26985 -3.3 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20785 -3.2 -3.6 transcriptional regulator compare
PS417_27040 -3.1 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_19885 -3.1 -4.0 flagellar basal body rod protein FlgG compare
PS417_19880 -3.1 -8.8 flagellar basal body L-ring protein compare
PS417_19805 -3.1 -4.6 flagellar M-ring protein FliF compare
PS417_24745 -3.1 -3.3 gamma-glutamyl phosphate reductase compare
PS417_18310 -3.0 -1.9 hypothetical protein compare
PS417_21595 -3.0 -5.2 flagellar biosynthesis protein FlgN compare
PS417_23775 -3.0 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_19650 -3.0 -7.3 chemotaxis protein CheW compare
PS417_19840 -3.0 -14.8 flagellar cap protein FliD compare
PS417_19865 -2.9 -10.1 flagellar hook protein FlgK compare
PS417_21555 -2.9 -12.3 flagellar hook protein FlgE compare
PS417_19725 -2.9 -9.7 flagellar biosynthesis protein FlhB compare
PS417_19860 -2.8 -15.9 flagellar hook protein FlgL compare
PS417_03560 -2.8 -1.9 GTP-binding protein compare
PS417_14065 -2.8 -9.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21565 -2.8 -5.4 flagellar basal body rod protein FlgC compare
PS417_19735 -2.7 -6.3 flagellar biosynthesis protein FliQ compare
PS417_19695 -2.7 -9.4 flagellar biosynthesis sigma factor compare
PS417_19745 -2.6 -9.9 flagellar assembly protein FliO compare
PS417_19795 -2.6 -13.9 flagellar assembly protein FliH compare
PS417_21570 -2.6 -7.9 flagellar basal body rod protein FlgB compare
PS417_06680 -2.6 -8.8 nuclease PIN compare
PS417_09210 -2.6 -1.8 TetR family transcriptional regulator compare
PS417_19740 -2.6 -6.3 flagellar biosynthesis protein flip compare
PS417_22565 -2.6 -1.0 formyltetrahydrofolate deformylase compare
PS417_19710 -2.6 -13.8 flagellar biosynthesis protein FlhA compare
PS417_12805 -2.5 -12.2 glycogen branching protein compare
PS417_19850 -2.5 -8.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19785 -2.5 -4.3 flagellar biogenesis protein compare
PS417_19755 -2.4 -2.2 flagellar motor switch protein FliM compare
PS417_21585 -2.4 -8.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19765 -2.3 -8.6 flagellar hook-length control protein compare
PS417_19730 -2.3 -4.2 flagellar biosynthesis protein FliR compare
PS417_06375 -2.3 -1.0 deoxycytidine triphosphate deaminase compare
PS417_19790 -2.3 -4.2 ATP synthase compare
PS417_23950 -2.3 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_27870 -2.3 -4.6 ATP-dependent DNA helicase RecG compare
PS417_17215 -2.2 -3.5 peptidylprolyl isomerase compare
PS417_19825 -2.2 -11.2 ATPase AAA compare
PS417_19665 -2.2 -3.5 flagellar motor protein MotD compare
PS417_01560 -2.2 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -2.1 -1.1 phosphoglycerate mutase compare
PS417_21575 -2.1 -6.1 chemotaxis protein compare
PS417_27315 -2.1 -1.7 hypothetical protein compare
PS417_23995 -2.1 -1.0 preprotein translocase subunit SecG compare
PS417_20985 -2.1 -1.3 porin compare
PS417_19660 -2.1 -4.8 cobalamin biosynthesis protein CobQ compare
PS417_24710 -2.1 -9.6 lipoprotein compare
PS417_08135 -2.1 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02415 -2.0 -4.6 phosphoserine phosphatase compare
PS417_13510 -2.0 -1.4 polyketide cyclase compare
PS417_15495 -2.0 -2.5 FAD-dependent oxidoreductase compare
PS417_27300 -2.0 -1.0 cell division protein ZapA compare
PS417_00185 -2.0 -4.5 tryptophan synthase subunit beta compare
PS417_19690 -1.9 -5.3 histidine kinase compare
PS417_27800 -1.9 -1.9 exodeoxyribonuclease III compare
PS417_23025 -1.9 -5.6 murein transglycosylase compare
PS417_27195 -1.9 -1.5 N-acetylglutamate synthase compare
PS417_02485 -1.9 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02000 -1.9 -11.5 glutamate synthase compare
PS417_04080 -1.9 -2.3 peptide ABC transporter substrate-binding protein compare
PS417_27865 -1.8 -2.0 LysR family transcriptional regulator compare
PS417_25710 -1.8 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_12855 -1.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08685 -1.8 -1.8 flagellar hook-length control protein FliK compare
PS417_19655 -1.8 -4.0 chemotaxis protein CheW compare
PS417_26990 -1.8 -0.9 RNA pyrophosphohydrolase compare
PS417_16005 -1.8 -3.7 ATPase compare
PS417_18540 -1.8 -3.7 colicin V production CvpA compare
PS417_00385 -1.8 -1.1 Fur family transcriptional regulator compare
PS417_02975 -1.7 -3.0 3-dehydroquinate dehydratase compare
PS417_19870 -1.7 -4.8 flagellar rod assembly protein FlgJ compare
PS417_12015 -1.7 -4.0 phosphoglycerate mutase compare
PS417_21480 -1.7 -1.7 23S rRNA pseudouridylate synthase compare
PS417_19955 -1.7 -1.2 hypothetical protein compare
PS417_00045 -1.7 -1.7 glycerol acyltransferase compare
PS417_27835 -1.6 -4.1 endoribonuclease compare
PS417_08090 -1.6 -0.8 3-oxoacyl-ACP reductase compare
PS417_06685 -1.6 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_22445 -1.6 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_26815 -1.6 -2.4 peptidase M16 compare
PS417_01565 -1.6 -4.8 imidazole glycerol phosphate synthase compare
PS417_02005 -1.6 -8.3 glutamate synthase compare
PS417_23370 -1.6 -4.8 protoheme IX farnesyltransferase compare
PS417_23380 -1.5 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_18600 -1.5 -3.3 isopropylmalate isomerase compare
PS417_02555 -1.5 -9.6 exoribonuclease R compare
PS417_23810 -1.5 -8.3 acetolactate synthase 3 catalytic subunit compare
PS417_24585 -1.5 -8.7 AMP nucleosidase compare
PS417_06500 -1.5 -1.7 hypothetical protein compare
PS417_26175 -1.5 -1.2 sarcosine oxidase subunit gamma compare
PS417_01575 -1.5 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16490 -1.5 -1.4 cell division protein FtsK compare
PS417_02560 -1.4 -1.3 23S rRNA methyltransferase compare
PS417_05885 -1.4 -6.8 potassium transporter Kup compare
PS417_01850 -1.4 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01855 -1.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_04440 -1.4 -2.3 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_19350 -1.4 -3.4 GTP cyclohydrolase compare
PS417_02225 -1.4 -2.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24705 -1.4 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_19705 -1.4 -1.9 flagellar biosynthesis regulator FlhF compare
PS417_25390 -1.3 -4.6 MFS transporter compare
PS417_04365 -1.3 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22450 -1.3 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_06200 -1.3 -3.9 protein-PII uridylyltransferase compare
PS417_07170 -1.3 -3.1 hypothetical protein compare
PS417_26420 -1.3 -1.4 hypothetical protein compare
PS417_22795 -1.3 -1.7 exclusion suppressor FxsA compare
PS417_18595 -1.3 -3.1 3-isopropylmalate dehydratase compare
PS417_21560 -1.3 -2.8 flagellar basal body rod modification protein FlgD compare
PS417_07640 -1.2 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04420 -1.2 -6.2 histidinol dehydrogenase compare
PS417_21430 -1.2 -1.6 3-oxoacyl-ACP synthase compare
PS417_06530 -1.2 -2.2 membrane protein compare
PS417_00180 -1.2 -1.9 tryptophan synthase subunit alpha compare
PS417_23805 -1.2 -3.4 acetolactate synthase 3 regulatory subunit compare
PS417_06205 -1.2 -6.5 methionine aminopeptidase compare
PS417_27515 -1.2 -3.9 heme biosynthesis protein HemY compare
PS417_08540 -1.2 -2.0 RNA helicase compare
PS417_19830 -1.2 -2.6 flagellar assembly protein FliT compare
PS417_01795 -1.2 -7.9 glucosyltransferase MdoH compare
PS417_25315 -1.2 -3.8 membrane protein compare
PS417_07615 -1.2 -4.3 TetR family transcriptional regulator compare
PS417_15100 -1.2 -1.7 BatB protein compare
PS417_05695 -1.2 -3.9 transcriptional regulator compare
PS417_01790 -1.2 -5.0 glucan biosynthesis protein G compare
PS417_22270 -1.2 -2.2 hypothetical protein compare
PS417_04915 -1.2 -1.3 glutamine ABC transporter ATP-binding protein compare
PS417_05815 -1.2 -3.2 recombinase RecA compare
PS417_21630 -1.2 -1.7 magnesium transporter compare
PS417_14245 -1.2 -1.5 hypothetical protein compare
PS417_18545 -1.2 -2.0 cell division protein compare
PS417_18560 -1.2 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24500 -1.2 -2.3 DEAD/DEAH box helicase compare
PS417_26850 -1.1 -0.8 twin-arginine translocation pathway signal protein compare
PS417_00370 -1.1 -0.8 hypothetical protein compare
PS417_07140 -1.1 -2.2 peptidase M48 compare
PS417_09085 -1.1 -1.0 hypothetical protein compare
PS417_04385 -1.1 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_13735 -1.1 -1.3 hypothetical protein compare
PS417_13640 -1.1 -2.3 ribose ABC transporter permease compare
PS417_01635 -1.1 -3.7 nitrogen regulation protein NR(I) compare
PS417_23170 -1.1 -1.7 FeS assembly protein IscX compare
PS417_04595 -1.1 -1.7 cell division protein MraZ compare
PS417_25725 -1.1 -7.4 anthranilate synthase component I compare
PS417_23825 -1.1 -3.7 penicillin-binding protein compare
PS417_01955 -1.1 -6.1 peptidase compare
PS417_06370 -1.1 -1.3 cold-shock protein compare
PS417_25720 -1.1 -3.4 anthranilate synthase component II compare
PS417_18150 -1.0 -2.4 chemotaxis protein CheY compare
PS417_00085 -1.0 -1.9 16S rRNA methyltransferase compare
PS417_24765 -1.0 -2.3 membrane protein compare
PS417_06540 -1.0 -1.5 membrane protein compare
PS417_00510 -1.0 -0.8 membrane protein compare
PS417_21035 -1.0 -4.6 multidrug transporter compare
PS417_09325 -1.0 -2.3 peptidase S41 compare
PS417_20705 -1.0 -2.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_02915 -1.0 -2.7 precorrin-3B C17-methyltransferase compare
PS417_21125 -1.0 -4.6 phosphoadenosine phosphosulfate reductase compare
PS417_05010 -1.0 -1.4 IclR family transcriptional regulator compare
PS417_25715 -1.0 -3.3 anthranilate phosphoribosyltransferase compare
PS417_08730 -1.0 -1.0 cytochrome C compare
PS417_16555 -1.0 -1.2 cupin compare
PS417_05635 -1.0 -3.3 membrane protein compare
PS417_07620 -1.0 -1.6 beta-hexosaminidase compare
PS417_03300 -1.0 -1.9 alanine acetyltransferase compare
PS417_24615 -1.0 -1.0 hypothetical protein compare
PS417_00220 -1.0 -1.1 hypothetical protein compare
PS417_02210 -1.0 -6.5 diguanylate cyclase compare
PS417_14200 -1.0 -1.9 hypothetical protein compare
PS417_16510 -0.9 -2.8 Clp protease ClpX compare
PS417_04475 -0.9 -3.6 hypothetical protein compare
PS417_08580 -0.9 -4.0 histidine kinase compare
PS417_28515 -0.9 -2.6 16S rRNA methyltransferase compare
PS417_16370 -0.9 -4.2 chemotaxis protein CheY compare
PS417_27085 -0.9 -2.4 AraC family transcriptional regulator compare
PS417_22895 -0.9 -4.6 tyrosine recombinase XerD compare
PS417_19630 -0.9 -2.3 LuxR family transcriptional regulator compare
PS417_18715 -0.9 -3.8 peptidase M4 compare
PS417_16990 -0.9 -3.5 acyl-CoA dehydrogenase compare
PS417_26645 -0.9 -2.0 chemotaxis protein compare
PS417_02705 -0.9 -1.7 urease accessory protein UreF compare
PS417_18590 -0.9 -3.8 SAM-dependent methyltransferase compare
PS417_02510 -0.9 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22050 -0.9 -2.3 ribonuclease BN compare
PS417_27520 -0.9 -2.4 uroporphyrin-III methyltransferase compare
PS417_09915 -0.9 -1.2 hypothetical protein compare
PS417_23385 -0.9 -4.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_23110 -0.9 -5.2 2-isopropylmalate synthase compare
PS417_20775 -0.9 -2.4 coproporphyrinogen III oxidase compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms