Experiment set18IT024 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_25; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1985 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.4 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.8 -9.7 3-isopropylmalate dehydrogenase compare
PP_0083 -5.6 -3.9 tryptophan synthase beta chain compare
PP_0292 -5.6 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4890 -5.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -5.5 -15.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -5.5 -9.8 Argininosuccinate synthase compare
PP_0422 -5.4 -5.9 Indole-3-glycerol phosphate synthase compare
PP_0965 -4.9 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4678 -4.8 -12.8 Ketol-acid reductoisomerase compare
PP_0082 -4.7 -7.9 tryptophan synthase alpha chain compare
PP_0290 -4.7 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0420 -4.7 -10.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -4.7 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -4.6 -12.1 homoserine O-acetyltransferase compare
PP_0593 -4.5 -1.4 putative ribosome-binding factor compare
PP_1079 -4.5 -6.6 Ornithine carbamoyltransferase compare
PP_5346 -4.5 -9.6 pyruvate carboxylase subunit B compare
PP_0417 -4.4 -14.9 Anthranilate synthase component 1 compare
PP_1025 -4.4 -11.1 2-isopropylmalate synthase compare
PP_4909 -4.3 -7.2 phosphoserine phosphatase compare
PP_0966 -4.3 -9.3 Histidinol dehydrogenase compare
PP_0421 -4.3 -7.8 Anthranilate phosphoribosyltransferase compare
PP_5289 -4.3 -4.7 Acetylglutamate kinase compare
PP_2976 -4.2 -1.9 putative transposase compare
PP_0184 -4.2 -7.9 Argininosuccinate lyase compare
PP_0291 -4.2 -4.2 conserved protein of unknown function compare
PP_5303 -4.2 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3511 -4.1 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_0289 -4.1 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -4.1 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -4.1 -9.6 Transaldolase compare
PP_5348 -4.0 -7.1 Transcriptional regulator, LysR family compare
PP_1999 -3.9 -2.8 membrane protein required for colicin V production compare
PP_1995 -3.9 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0846 -3.9 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_5128 -3.9 -6.6 Dihydroxy-acid dehydratase compare
PP_5483 -3.9 -2.4 conserved protein of unknown function compare
PP_2328 -3.7 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_5347 -3.6 -10.1 pyruvate carboxylase subunit A compare
PP_5185 -3.6 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4379 -3.5 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2001 -3.4 -7.2 O-succinylhomoserine sulfhydrylase compare
PP_3999 -3.4 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4517 -3.3 -2.8 conserved protein of unknown function compare
PP_2371 -3.3 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.3 -5.8 Nitrogen regulation protein NR(I) compare
PP_5155 -3.3 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5098 -3.2 -6.0 methionine biosynthesis protein MetW compare
PP_1231 -3.1 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1022 -2.9 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1362 -2.9 -4.8 pyruvate kinase II compare
PP_0362 -2.9 -8.2 Biotin synthase compare
PP_3117 -2.6 -2.4 putative protein involved in error-prone processing of DNA lesions compare
PP_4984 -2.6 -6.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4782 -2.5 -4.3 Phosphomethylpyrimidine kinase compare
PP_2390 -2.5 -5.2 Transcriptional regulator, LysR family compare
PP_0787 -2.5 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -2.5 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5456 -2.5 -1.3 conserved protein of unknown function compare
PP_5028 -2.5 -4.3 proline iminopeptidase compare
PP_1233 -2.4 -4.4 sulfurtransferase compare
PP_1664 -2.4 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0888 -2.4 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_1237 -2.4 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_2327 -2.3 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4122 -2.2 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0366 -2.1 -4.4 dethiobiotin synthetase compare
PP_2402 -2.1 -2.3 putative Sensor histidine kinase compare
PP_4131 -2.0 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_5104 -2.0 -6.0 thiazole synthase compare
PP_4504 -2.0 -1.8 conserved exported protein of unknown function compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_0363 -1.9 -5.6 8-amino-7-oxononanoate synthase compare
PP_5658 -1.9 -2.9 protein of unknown function compare
PP_0905 -1.9 -1.3 conserved exported protein of unknown function compare
PP_5350 -1.9 -2.7 Transcriptional regulator, RpiR family compare
PP_4199 -1.8 -1.3 putative Lipoprotein compare
PP_t29 -1.8 -1.7 tRNA-Ala compare
PP_4994 -1.8 -3.1 conserved protein of unknown function compare
PP_2336 -1.8 -4.1 aconitate hydratase 1 compare
PP_4785 -1.8 -7.0 conserved exported protein of unknown function compare
PP_4835 -1.8 -2.7 conserved exported protein of unknown function compare
PP_2145 -1.8 -3.4 beta-N-acetylglucosaminidase compare
PP_1770 -1.7 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4824 -1.7 -5.3 Sensor histidine kinase/response regulator compare
PP_4699 -1.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5393 -1.7 -1.5 putative metal-binding chaperone compare
PP_3110 -1.7 -2.4 protein of unknown function compare
PP_0364 -1.7 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_1045 -1.7 -2.0 Type II secretion pathway protein XcpP compare
PP_3876 -1.6 -3.0 conserved protein of unknown function compare
PP_0547 -1.6 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3715 -1.6 -3.1 Muconate cycloisomerase 1 compare
PP_4642 -1.6 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_1912 -1.6 -2.6 Phosphate acyltransferase compare
PP_0393 -1.5 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_1142 -1.5 -1.0 conserved protein of unknown function compare
PP_2388 -1.5 -1.7 Transporter, LysE family compare
PP_4792 -1.5 -2.9 conserved exported protein of unknown function compare
PP_0122 -1.5 -2.0 conserved exported protein of unknown function compare
PP_3892 -1.5 -1.3 conserved protein of unknown function compare
PP_1764 -1.5 -1.9 Phosphoglycolate phosphatase 2 compare
PP_5572 -1.5 -3.2 protein of unknown function compare
PP_3946 -1.5 -1.2 HTH-type transcriptional repressor NicR compare
PP_0365 -1.4 -4.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0065 -1.4 -3.0 NAD-binding component of TrK potassium transporter compare
PP_4126 -1.4 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4964 -1.4 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0566 -1.4 -1.2 translation-related factor compare
PP_3880 -1.4 -1.5 conserved exported protein of unknown function compare
PP_4693 -1.4 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_0164 -1.4 -2.4 conserved protein of unknown function compare
PP_4859 -1.4 -2.9 Transcriptional regulator, TetR family compare
PP_5248 -1.4 -0.7 putative hydrolase compare
PP_4895 -1.4 -2.0 tRNA dimethylallyltransferase compare
PP_4364 -1.4 -2.8 putative Anti-sigma F factor antagonist compare
PP_4262 -1.4 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2433 -1.4 -1.9 conserved protein of unknown function compare
PP_4804 -1.3 -2.4 RlpA-like lipoprotein compare
PP_2750 -1.3 -1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2370 -1.3 -1.4 conserved protein of unknown function compare
PP_4045 -1.3 -1.3 conserved protein of unknown function compare
PP_0916 -1.3 -1.6 Amino acid transporter LysE compare
PP_0610 -1.3 -1.5 conserved exported protein of unknown function compare
PP_3048 -1.3 -1.6 conserved protein of unknown function compare
PP_2253 -1.2 -1.8 Transcriptional regulator, GntR family compare
PP_1589 -1.2 -4.1 uridylyltransferase compare
PP_1656 -1.2 -4.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_3417 -1.2 -2.7 D-gluconate transporter compare
PP_4922 -1.2 -5.8 Phosphomethylpyrimidine synthase compare
PP_4120 -1.2 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_0022 -1.2 -0.9 hypothetical protein compare
PP_2880 -1.2 -1.7 Transcriptional regulator, TetR family compare
PP_1632 -1.2 -1.6 conserved protein of unknown function compare
PP_5095 -1.2 -0.9 pyrroline-5-carboxylate reductase compare
PP_1898 -1.2 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1654 -1.2 -1.8 cysteine synthase B compare
PP_4701 -1.1 -0.9 glucose-6-phosphate isomerase compare
PP_4129 -1.1 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2878 -1.1 -2.1 conserved protein of unknown function compare
PP_5639 -1.1 -4.6 conserved exported protein of unknown function compare
PP_3790 -1.1 -4.6 diaminopimelate epimerase compare
PP_5058 -1.1 -2.7 Carboxy-terminal-processing protease compare
PP_4480 -1.1 -3.7 arginine N-succinyltransferase, subunit alpha compare
PP_3241 -1.1 -1.2 conserved exported protein of unknown function compare
PP_5217 -1.1 -4.9 Polyphosphate kinase compare
PP_2547 -1.1 -2.4 Transcriptional regulator, LysR family compare
PP_1055 -1.1 -1.0 Type II secretion pathway protein GspN compare
PP_2675 -1.1 -1.8 Cytochrome c-type protein compare
PP_1552 -1.1 -2.0 putative Phage replication protein compare
PP_0735 -1.1 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_3434 -1.1 -1.7 conserved protein of unknown function compare
PP_5499 -1.1 -1.7 conserved protein of unknown function compare
PP_0959 -1.1 -1.2 phospholipid ABC transporter compare
PP_1097 -1.1 -0.9 Methionine--tRNA ligase compare
PP_1217 -1.1 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3035 -1.1 -1.2 conserved protein of unknown function compare
PP_2060 -1.0 -1.4 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0405 -1.0 -3.7 conserved protein of unknown function compare
PP_5048 -1.0 -2.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1114 -1.0 -3.3 SEC-C domain protein compare
PP_3532 -1.0 -1.5 Transcriptional regulator, AsnC family compare
PP_1479 -1.0 -2.2 HicB protein compare
PP_4273 -1.0 -1.3 Transcriptional regulator, MerR family compare
PP_3258 -1.0 -1.6 conserved protein of unknown function compare
PP_5198 -1.0 -1.6 conserved protein of unknown function compare
PP_4952 -1.0 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3378 -1.0 -1.8 putative 2-ketogluconokinase compare
PP_4953 -1.0 -2.7 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_5453 -1.0 -1.5 conserved protein of unknown function compare
PP_4074 -1.0 -3.6 conserved protein of unknown function compare
PP_1541 -1.0 -3.0 putative Methyltransferase compare
PP_1493 -1.0 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5225 -1.0 -1.0 frataxin compare
PP_5203 -1.0 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4507 -1.0 -3.4 potassium transporter compare
PP_5628 -1.0 -1.7 conserved protein of unknown function compare
PP_3034 -1.0 -1.7 putative Regulator protein compare
PP_1348 -1.0 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4313 -1.0 -2.4 putative peptidylprolyl isomerase compare
PP_4937 -1.0 -1.5 toluene tolerance protein compare
PP_2110 -1.0 -1.5 putative ribosomal large subunit pseudouridine synthase compare
PP_2144 -1.0 -2.1 Transcriptional regulator, TetR family compare
PP_0258 -1.0 -1.9 regulator of murein cross-linking compare
PP_5156 -1.0 -1.9 conserved exported protein of unknown function compare
PP_3837 -1.0 -2.4 inner membrane protein of unknown function compare
PP_3346 -1.0 -2.1 Nickel transporter ATP-binding protein compare
PP_0841 -1.0 -1.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0025 -1.0 -0.9 hypothetical protein compare
PP_0643 -1.0 -2.2 protein of unknown function compare
PP_5448 -1.0 -2.5 conserved protein of unknown function compare
PP_1304 -0.9 -3.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1774 -0.9 -1.3 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms