Experiment set18IT021 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.3 -2.3 23S rRNA pseudouridylate synthase compare
PS417_06375 -4.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_22565 -3.8 -1.2 formyltetrahydrofolate deformylase compare
PS417_23950 -3.7 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_27795 -3.5 -1.1 orotate phosphoribosyltransferase compare
PS417_00755 -3.5 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_08125 -3.2 -1.0 prephenate dehydratase compare
PS417_14065 -3.0 -8.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_17215 -2.9 -3.9 peptidylprolyl isomerase compare
PS417_01580 -2.9 -1.8 imidazole glycerol phosphate synthase compare
PS417_02415 -2.8 -4.9 phosphoserine phosphatase compare
PS417_19885 -2.7 -3.8 flagellar basal body rod protein FlgG compare
PS417_04365 -2.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21595 -2.6 -5.4 flagellar biosynthesis protein FlgN compare
PS417_16490 -2.5 -1.8 cell division protein FtsK compare
PS417_26985 -2.5 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02975 -2.5 -4.4 3-dehydroquinate dehydratase compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_03455 -2.4 -2.2 type III secretion protein compare
PS417_19860 -2.4 -14.4 flagellar hook protein FlgL compare
PS417_12805 -2.4 -11.2 glycogen branching protein compare
PS417_27595 -2.3 -3.3 recombinase XerC compare
PS417_19880 -2.3 -6.4 flagellar basal body L-ring protein compare
PS417_04380 -2.3 -1.2 ABC transporter permease compare
PS417_19840 -2.3 -10.4 flagellar cap protein FliD compare
PS417_19650 -2.3 -4.7 chemotaxis protein CheW compare
PS417_06680 -2.3 -7.6 nuclease PIN compare
PS417_27195 -2.2 -1.7 N-acetylglutamate synthase compare
PS417_16005 -2.2 -3.0 ATPase compare
PS417_19735 -2.2 -5.8 flagellar biosynthesis protein FliQ compare
PS417_19655 -2.2 -4.6 chemotaxis protein CheW compare
PS417_02805 -2.1 -2.3 urease subunit gamma compare
PS417_27865 -2.1 -2.2 LysR family transcriptional regulator compare
PS417_19725 -2.1 -5.4 flagellar biosynthesis protein FlhB compare
PS417_27870 -2.1 -3.9 ATP-dependent DNA helicase RecG compare
PS417_19805 -2.0 -4.7 flagellar M-ring protein FliF compare
PS417_19730 -2.0 -2.6 flagellar biosynthesis protein FliR compare
PS417_19690 -2.0 -7.4 histidine kinase compare
PS417_19745 -2.0 -8.2 flagellar assembly protein FliO compare
PS417_19800 -2.0 -3.0 flagellar motor switch protein FliG compare
PS417_19665 -2.0 -2.7 flagellar motor protein MotD compare
PS417_22445 -2.0 -4.1 ATP-dependent DNA helicase RuvB compare
PS417_19850 -2.0 -6.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_00370 -2.0 -1.1 hypothetical protein compare
PS417_24745 -2.0 -3.6 gamma-glutamyl phosphate reductase compare
PS417_19865 -1.9 -9.8 flagellar hook protein FlgK compare
PS417_19795 -1.9 -7.6 flagellar assembly protein FliH compare
PS417_19710 -1.9 -10.5 flagellar biosynthesis protein FlhA compare
PS417_26850 -1.9 -1.0 twin-arginine translocation pathway signal protein compare
PS417_01605 -1.9 -1.2 phosphoglycerate mutase compare
PS417_02560 -1.9 -2.0 23S rRNA methyltransferase compare
PS417_21555 -1.9 -10.2 flagellar hook protein FlgE compare
PS417_19695 -1.8 -7.6 flagellar biosynthesis sigma factor compare
PS417_19870 -1.8 -5.1 flagellar rod assembly protein FlgJ compare
PS417_23025 -1.8 -5.2 murein transglycosylase compare
PS417_20985 -1.8 -1.2 porin compare
PS417_21565 -1.8 -4.3 flagellar basal body rod protein FlgC compare
PS417_19955 -1.8 -2.2 hypothetical protein compare
PS417_03165 -1.8 -2.8 hypothetical protein compare
PS417_19660 -1.8 -5.7 cobalamin biosynthesis protein CobQ compare
PS417_27040 -1.8 -2.3 3-phosphoglycerate dehydrogenase compare
PS417_19740 -1.8 -8.0 flagellar biosynthesis protein flip compare
PS417_19765 -1.8 -7.8 flagellar hook-length control protein compare
PS417_27135 -1.7 -0.8 glutamine synthetase compare
PS417_21575 -1.7 -6.8 chemotaxis protein compare
PS417_25315 -1.7 -3.3 membrane protein compare
PS417_19790 -1.7 -3.8 ATP synthase compare
PS417_19755 -1.7 -1.9 flagellar motor switch protein FliM compare
PS417_01855 -1.7 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_05535 -1.7 -1.6 Fis family transcriptional regulator compare
PS417_19835 -1.7 -1.2 flagellar biosynthesis protein FliS compare
PS417_21570 -1.6 -7.2 flagellar basal body rod protein FlgB compare
PS417_07710 -1.6 -4.8 membrane protein compare
PS417_19825 -1.6 -8.8 ATPase AAA compare
PS417_07560 -1.6 -1.1 universal stress protein UspA compare
PS417_19705 -1.6 -2.8 flagellar biosynthesis regulator FlhF compare
PS417_04080 -1.6 -3.5 peptide ABC transporter substrate-binding protein compare
PS417_08155 -1.6 -1.2 integration host factor subunit beta compare
PS417_08730 -1.6 -2.0 cytochrome C compare
PS417_26370 -1.6 -3.3 RNA helicase compare
PS417_02555 -1.6 -9.3 exoribonuclease R compare
PS417_23545 -1.6 -2.1 gamma-glutamyl kinase compare
PS417_02880 -1.5 -1.3 copper chaperone compare
PS417_24710 -1.5 -5.6 lipoprotein compare
PS417_23775 -1.5 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_05815 -1.5 -4.5 recombinase RecA compare
PS417_23810 -1.5 -7.9 acetolactate synthase 3 catalytic subunit compare
PS417_16555 -1.5 -1.8 cupin compare
PS417_20785 -1.5 -3.0 transcriptional regulator compare
PS417_19675 -1.4 -2.9 chemotaxis protein CheY compare
PS417_26260 -1.4 -1.0 hypothetical protein compare
PS417_01565 -1.4 -3.0 imidazole glycerol phosphate synthase compare
PS417_09235 -1.4 -1.0 molecular chaperone compare
PS417_06200 -1.4 -4.2 protein-PII uridylyltransferase compare
PS417_24585 -1.4 -7.8 AMP nucleosidase compare
PS417_27300 -1.4 -0.9 cell division protein ZapA compare
PS417_21585 -1.4 -6.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_27800 -1.4 -1.8 exodeoxyribonuclease III compare
PS417_19785 -1.4 -2.5 flagellar biogenesis protein compare
PS417_12855 -1.4 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26815 -1.4 -2.4 peptidase M16 compare
PS417_02005 -1.4 -6.7 glutamate synthase compare
PS417_23385 -1.4 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_26730 -1.3 -0.5 pyrroline-5-carboxylate reductase compare
PS417_01575 -1.3 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02000 -1.3 -6.5 glutamate synthase compare
PS417_01850 -1.3 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04595 -1.3 -1.8 cell division protein MraZ compare
PS417_27835 -1.3 -5.0 endoribonuclease compare
PS417_04475 -1.3 -3.1 hypothetical protein compare
PS417_19350 -1.3 -2.4 GTP cyclohydrolase compare
PS417_23375 -1.3 -1.3 cytochrome C oxidase compare
PS417_08090 -1.3 -0.8 3-oxoacyl-ACP reductase compare
PS417_08540 -1.3 -2.0 RNA helicase compare
PS417_00185 -1.3 -2.7 tryptophan synthase subunit beta compare
PS417_15510 -1.3 -2.0 hypothetical protein compare
PS417_18560 -1.3 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21430 -1.2 -1.6 3-oxoacyl-ACP synthase compare
PS417_16370 -1.2 -4.6 chemotaxis protein CheY compare
PS417_27515 -1.2 -2.9 heme biosynthesis protein HemY compare
PS417_08135 -1.2 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07615 -1.2 -3.8 TetR family transcriptional regulator compare
PS417_18070 -1.2 -1.1 general secretion pathway protein GspH compare
PS417_08025 -1.2 -1.2 acetylornithine aminotransferase compare
PS417_05100 -1.2 -1.5 RNA polymerase sigma factor compare
PS417_07640 -1.2 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17070 -1.2 -1.7 RNA polymerase subunit sigma-24 compare
PS417_12565 -1.2 -2.9 2-dehydro-3-deoxygluconokinase compare
PS417_00535 -1.2 -1.7 Holliday junction resolvase compare
PS417_04420 -1.2 -6.9 histidinol dehydrogenase compare
PS417_04585 -1.2 -1.0 hypothetical protein compare
PS417_01640 -1.2 -4.6 histidine kinase compare
PS417_23770 -1.2 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_00455 -1.2 -1.5 hypothetical protein compare
PS417_18105 -1.2 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_05635 -1.2 -5.1 membrane protein compare
PS417_23390 -1.2 -3.9 ubiquinol oxidase subunit II compare
PS417_05790 -1.2 -2.0 hypothetical protein compare
PS417_04960 -1.2 -1.5 hypothetical protein compare
PS417_24155 -1.2 -0.8 ATP-binding protein compare
PS417_21630 -1.2 -1.5 magnesium transporter compare
PS417_04385 -1.2 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_01915 -1.1 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21125 -1.1 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_06710 -1.1 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_28225 -1.1 -1.1 hypothetical protein compare
PS417_01030 -1.1 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_04410 -1.1 -1.5 hypothetical protein compare
PS417_20160 -1.1 -3.2 cysteine synthase compare
PS417_27425 -1.1 -5.2 exopolyphosphatase compare
PS417_04305 -1.1 -1.2 aspartate ammonia-lyase compare
PS417_24650 -1.1 -1.5 membrane protein compare
PS417_06205 -1.1 -5.1 methionine aminopeptidase compare
PS417_18310 -1.1 -1.3 hypothetical protein compare
PS417_12870 -1.1 -1.6 enoyl-CoA hydratase compare
PS417_02630 -1.1 -1.7 NAD synthetase compare
PS417_15090 -1.0 -1.6 hypothetical protein compare
PS417_05200 -1.0 -1.9 DNA recombination protein RecO compare
PS417_23370 -1.0 -2.3 protoheme IX farnesyltransferase compare
PS417_22945 -1.0 -1.8 phosphoribosylglycinamide formyltransferase compare
PS417_01955 -1.0 -5.2 peptidase compare
PS417_07620 -1.0 -1.6 beta-hexosaminidase compare
PS417_01790 -1.0 -4.3 glucan biosynthesis protein G compare
PS417_06540 -1.0 -1.3 membrane protein compare
PS417_01795 -1.0 -5.7 glucosyltransferase MdoH compare
PS417_01635 -1.0 -3.3 nitrogen regulation protein NR(I) compare
PS417_04275 -1.0 -5.9 hypothetical protein compare
PS417_23250 -1.0 -4.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_00065 -1.0 -1.2 3-methyladenine DNA glycosylase compare
PS417_23315 -1.0 -1.0 transcriptional regulator compare
PS417_18545 -1.0 -2.3 cell division protein compare
PS417_25780 -1.0 -1.6 molecular chaperone DnaJ compare
PS417_24705 -1.0 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_23915 -1.0 -3.4 pantoate--beta-alanine ligase compare
PS417_23380 -1.0 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_03000 -1.0 -3.5 translation initiation factor Sui1 compare
PS417_19685 -1.0 -4.9 protein phosphatase compare
PS417_21560 -0.9 -3.4 flagellar basal body rod modification protein FlgD compare
PS417_20775 -0.9 -2.6 coproporphyrinogen III oxidase compare
PS417_18540 -0.9 -1.9 colicin V production CvpA compare
PS417_02510 -0.9 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12375 -0.9 -1.9 serine/threonine protein phosphatase compare
PS417_26755 -0.9 -1.0 nucleoside-triphosphate diphosphatase compare
PS417_22115 -0.9 -1.8 transcriptional regulator compare
PS417_06330 -0.9 -2.5 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_00385 -0.9 -0.7 Fur family transcriptional regulator compare
PS417_02725 -0.9 -2.1 hypothetical protein compare
PS417_19415 -0.9 -1.9 allantoinase compare
PS417_18860 -0.9 -3.9 transcriptional regulator compare
PS417_22520 -0.9 -1.0 histidine kinase compare
PS417_21015 -0.9 -1.7 EstX protein compare
PS417_01620 -0.9 -1.6 preprotein translocase subunit SecB compare
PS417_16510 -0.9 -1.3 Clp protease ClpX compare
PS417_13510 -0.9 -0.8 polyketide cyclase compare
PS417_10720 -0.9 -4.4 chemotaxis protein CheY compare
PS417_26740 -0.9 -3.9 homoserine acetyltransferase compare
PS417_03560 -0.9 -1.0 GTP-binding protein compare
PS417_23805 -0.9 -2.5 acetolactate synthase 3 regulatory subunit compare
PS417_07170 -0.9 -1.7 hypothetical protein compare
PS417_18715 -0.9 -3.8 peptidase M4 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms