Experiment set18IT021 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_25

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.2 -5.0 Indole-3-glycerol phosphate synthase compare
PP_0293 -6.4 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -6.4 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -6.2 -9.4 Transaldolase compare
PP_3511 -6.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_5348 -6.1 -7.2 Transcriptional regulator, LysR family compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_4679 -5.7 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -5.6 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0083 -5.6 -3.9 tryptophan synthase beta chain compare
PP_1985 -5.3 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_5185 -5.3 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -5.2 -17.0 Ketol-acid reductoisomerase compare
PP_5098 -5.0 -9.7 methionine biosynthesis protein MetW compare
PP_5289 -5.0 -4.9 Acetylglutamate kinase compare
PP_4680 -5.0 -16.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -4.9 -5.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0289 -4.9 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -4.8 -11.0 Histidinol dehydrogenase compare
PP_5097 -4.6 -15.0 homoserine O-acetyltransferase compare
PP_1995 -4.5 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -4.5 -9.7 3-isopropylmalate dehydrogenase compare
PP_0417 -4.5 -17.1 Anthranilate synthase component 1 compare
PP_0965 -4.4 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0290 -4.4 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -4.4 -8.5 Argininosuccinate lyase compare
PP_5346 -4.4 -10.0 pyruvate carboxylase subunit B compare
PP_0421 -4.4 -8.0 Anthranilate phosphoribosyltransferase compare
PP_5155 -4.2 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5347 -4.0 -10.6 pyruvate carboxylase subunit A compare
PP_5015 -3.9 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4696 -3.9 -5.9 Nitrogen regulation protein NR(I) compare
PP_1079 -3.9 -6.1 Ornithine carbamoyltransferase compare
PP_1025 -3.8 -12.9 2-isopropylmalate synthase compare
PP_1088 -3.8 -11.5 Argininosuccinate synthase compare
PP_4909 -3.7 -7.5 phosphoserine phosphatase compare
PP_2001 -3.7 -8.0 O-succinylhomoserine sulfhydrylase compare
PP_4890 -3.6 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5303 -3.6 -5.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5128 -3.6 -6.4 Dihydroxy-acid dehydratase compare
PP_4984 -3.5 -8.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0292 -3.5 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3999 -3.3 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -3.3 -2.2 3-isopropylmalate dehydratase small subunit compare
PP_2370 -3.1 -2.6 conserved protein of unknown function compare
PP_2328 -3.1 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_0420 -3.1 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0362 -2.9 -9.0 Biotin synthase compare
PP_0735 -2.8 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_0365 -2.8 -6.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5000 -2.8 -2.1 peptidase component of the ATP-dependent HslVU protease compare
PP_4902 -2.6 -3.5 Oligoribonuclease compare
PP_4379 -2.6 -4.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4782 -2.6 -5.3 Phosphomethylpyrimidine kinase compare
PP_0787 -2.6 -3.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5350 -2.6 -4.6 Transcriptional regulator, RpiR family compare
PP_0363 -2.5 -10.1 8-amino-7-oxononanoate synthase compare
PP_1022 -2.4 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_4804 -2.3 -4.1 RlpA-like lipoprotein compare
PP_0364 -2.3 -6.1 pimeloyl-[acp] methyl ester esterase compare
PP_3417 -2.1 -4.7 D-gluconate transporter compare
PP_1233 -2.1 -3.9 sulfurtransferase compare
PP_2402 -2.1 -3.0 putative Sensor histidine kinase compare
PP_4964 -2.0 -4.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5248 -2.0 -2.2 putative hydrolase compare
PP_2378 -2.0 -3.2 Fe/S biogenesis protein NfuA compare
PP_3808 -2.0 -2.6 Antibiotic synthesis protein MbtH compare
PP_0291 -2.0 -2.3 conserved protein of unknown function compare
PP_1783 -2.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5104 -2.0 -6.0 thiazole synthase compare
PP_0393 -1.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1231 -1.9 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2302 -1.9 -5.5 DNA-binding, ATP-dependent protease compare
PP_5331 -1.9 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1362 -1.8 -4.1 pyruvate kinase II compare
PP_1654 -1.8 -3.3 cysteine synthase B compare
PP_0366 -1.8 -3.7 dethiobiotin synthetase compare
PP_2899 -1.8 -1.7 conserved exported protein of unknown function compare
PP_1672 -1.7 -4.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1733 -1.7 -2.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_5217 -1.6 -7.2 Polyphosphate kinase compare
PP_4532 -1.6 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5295 -1.6 -2.6 conserved protein of unknown function compare
PP_4997 -1.6 -2.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5022 -1.6 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_4480 -1.6 -5.1 arginine N-succinyltransferase, subunit alpha compare
PP_2388 -1.5 -3.6 Transporter, LysE family compare
PP_t11 -1.5 -2.6 tRNA-Lys compare
PP_4895 -1.5 -2.0 tRNA dimethylallyltransferase compare
PP_4785 -1.5 -6.3 conserved exported protein of unknown function compare
PP_5628 -1.5 -3.1 conserved protein of unknown function compare
PP_0547 -1.5 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1734 -1.4 -3.1 Probable septum site-determining protein MinC compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_5028 -1.3 -2.8 proline iminopeptidase compare
PP_4693 -1.3 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_1009 -1.3 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1912 -1.3 -3.3 Phosphate acyltransferase compare
PP_4699 -1.3 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1011 -1.3 -4.2 glucokinase compare
PP_2145 -1.3 -2.8 beta-N-acetylglucosaminidase compare
PP_2032 -1.3 -4.8 putative ATPase compare
PP_0164 -1.3 -3.4 conserved protein of unknown function compare
PP_4482 -1.3 -3.1 Transcriptional regulator, AraC family compare
PP_1898 -1.2 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5203 -1.2 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_5639 -1.2 -5.4 conserved exported protein of unknown function compare
PP_t12 -1.2 -1.1 tRNA-Thr compare
PP_2136 -1.2 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4938 -1.2 -5.5 putative Glycosyl transferase compare
PP_2883 -1.2 -1.5 conserved protein of unknown function compare
PP_0607 -1.2 -2.2 putative Type IV pili biogenesis protein FimT compare
PP_1679 -1.2 -3.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5320 -1.2 -4.4 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_2031 -1.2 -2.1 conserved protein of unknown function compare
PP_1304 -1.1 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4058 -1.1 -5.4 1,4-alpha-glucan branching enzyme compare
PP_1994 -1.1 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4936 -1.1 -5.4 O-antigen polymerase compare
PP_1656 -1.1 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_4122 -1.1 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4874 -1.1 -1.1 50S ribosomal protein L9 compare
PP_0406 -1.1 -1.9 Nucleotidyltransferase family protein compare
PP_2044 -1.1 -1.4 conserved inner membrane protein of unknown function compare
PP_4471 -1.1 -3.0 Magnesium transporter compare
PP_4098 -1.1 -1.8 UvrABC system protein C compare
PP_1938 -1.1 -1.7 conserved protein of unknown function compare
PP_4922 -1.1 -5.3 Phosphomethylpyrimidine synthase compare
PP_2171 -1.0 -2.2 Transporter, LysE family compare
PP_1655 -1.0 -2.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3580 -1.0 -2.1 conserved protein of unknown function compare
PP_0593 -1.0 -1.0 putative ribosome-binding factor compare
PP_3541 -1.0 -1.9 Transporter, MgtC family compare
PP_5705 -1.0 -1.5 protein of unknown function compare
PP_2403 -1.0 -1.5 Chemotaxis protein CheY compare
PP_2497 -1.0 -2.2 conserved protein of unknown function compare
PP_2681 -1.0 -1.6 coenzyme PQQ synthesis protein D compare
PP_0122 -1.0 -3.1 conserved exported protein of unknown function compare
PP_0962 -1.0 -1.5 toluene-tolerance protein compare
PP_1348 -1.0 -4.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2615 -1.0 -1.6 hemolysin-coregulated protein compare
PP_1426 -1.0 -5.3 L-aspartate oxidase compare
PP_2232 -1.0 -3.7 XRE family transcriptional regulator compare
PP_1303 -0.9 -3.2 Sulfate adenylyltransferase subunit 2 compare
PP_4131 -0.9 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_3241 -0.9 -1.2 conserved exported protein of unknown function compare
PP_5548 -0.9 -2.1 protein of unknown function compare
PP_1074 -0.9 -1.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1553 -0.9 -1.0 conserved protein of unknown function compare
PP_4477 -0.9 -4.4 N-succinylarginine dihydrolase compare
PP_1552 -0.9 -2.1 putative Phage replication protein compare
PP_0368 -0.9 -6.2 putative Acyl-CoA dehydrogenase compare
PP_1268 -0.9 -1.2 putative HtrA suppressor protein sohA compare
PP_0138 -0.9 -4.6 conserved membrane protein of unknown function compare
PP_2341 -0.9 -1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1770 -0.9 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4695 -0.9 -4.8 Sensory box histidine kinase compare
PP_2088 -0.9 -1.7 RNA polymerase sigma factor SigX compare
PP_4121 -0.9 -2.6 NADH-quinone oxidoreductase subunit C/D compare
PP_2345 -0.9 -2.2 conserved exported protein of unknown function compare
PP_1198 -0.9 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5507 -0.9 -2.6 protein of unknown function compare
PP_5321 -0.9 -3.7 two-component system sensory histidine kinase conserved
PP_4406 -0.9 -1.3 conserved protein of unknown function compare
PP_2864 -0.9 -1.9 conserved protein of unknown function compare
PP_4994 -0.9 -2.1 conserved protein of unknown function compare
PP_3384 -0.9 -2.2 gluconate 2-dehydrogenase gamma subunit compare
PP_1764 -0.8 -1.5 Phosphoglycolate phosphatase 2 compare
PP_5598 -0.8 -1.8 conserved protein of unknown function compare
PP_1344 -0.8 -1.4 conserved protein of unknown function compare
PP_1860 -0.8 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_2390 -0.8 -3.8 Transcriptional regulator, LysR family compare
PP_2631 -0.8 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0405 -0.8 -4.2 conserved protein of unknown function compare
PP_4534 -0.8 -3.2 conserved protein of unknown function compare
PP_1512 -0.8 -1.3 conserved protein of unknown function compare
PP_1673 -0.8 -2.6 cobyrinate a,c-diamide synthase compare
PP_4199 -0.8 -0.9 putative Lipoprotein compare
PP_0339 -0.8 -0.6 Pyruvate dehydrogenase E1 component compare
PP_0001 -0.8 -0.7 probable chromosome-partitioning protein compare
PP_1629 -0.8 -2.9 Protein RecA compare
PP_4701 -0.8 -0.8 glucose-6-phosphate isomerase compare
PP_3883 -0.8 -2.0 putative Phage holin compare
PP_3363 -0.8 -3.1 putative thymidylate kinase compare
PP_1216 -0.8 -0.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2153 -0.8 -1.7 conserved protein of unknown function compare
PP_4213 -0.8 -1.0 putative dipeptidase compare
PP_4832 -0.8 -1.8 Precorrin-6x reductase compare
PP_1013 -0.8 -2.9 Sensor histidine kinase compare
PP_2137 -0.8 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_3048 -0.8 -1.4 conserved protein of unknown function compare
PP_4054 -0.8 -1.7 conserved protein of unknown function compare
PP_5227 -0.8 -3.1 diaminopimelate decarboxylase compare
PP_4262 -0.8 -1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1068 -0.8 -2.0 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1410 -0.7 -0.7 conserved protein of unknown function compare
PP_1774 -0.7 -2.2 conserved exported protein of unknown function compare
PP_2928 -0.7 -3.0 Saccharopine dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms