Experiment set18IT020 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_25

200 most important genes:

  gene name fitness t score description  
PP_0292 -6.6 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -6.4 -7.6 Indole-3-glycerol phosphate synthase compare
PP_4678 -6.4 -14.3 Ketol-acid reductoisomerase compare
PP_1986 -6.0 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.8 -10.4 3-isopropylmalate dehydrogenase compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_0967 -5.8 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -5.8 -12.9 Transaldolase compare
PP_5289 -5.7 -4.0 Acetylglutamate kinase compare
PP_5347 -5.7 -10.3 pyruvate carboxylase subunit A compare
PP_0082 -5.7 -5.5 tryptophan synthase alpha chain compare
PP_2371 -5.7 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -5.4 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -5.4 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5097 -5.4 -15.6 homoserine O-acetyltransferase compare
PP_1995 -5.2 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -5.1 -13.1 Histidinol dehydrogenase compare
PP_0965 -5.1 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -5.1 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.0 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5015 -5.0 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5155 -5.0 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -4.9 -3.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5348 -4.8 -8.7 Transcriptional regulator, LysR family compare
PP_0289 -4.7 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -4.6 -8.8 Argininosuccinate lyase compare
PP_0421 -4.4 -7.4 Anthranilate phosphoribosyltransferase compare
PP_5346 -4.3 -8.6 pyruvate carboxylase subunit B compare
PP_5098 -4.3 -8.3 methionine biosynthesis protein MetW compare
PP_2001 -4.3 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_0417 -4.1 -15.8 Anthranilate synthase component 1 compare
PP_1079 -4.0 -5.1 Ornithine carbamoyltransferase compare
PP_4890 -4.0 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0293 -3.8 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2370 -3.8 -4.3 conserved protein of unknown function compare
PP_4696 -3.7 -7.5 Nitrogen regulation protein NR(I) compare
PP_5303 -3.7 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4680 -3.7 -12.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -3.6 -8.7 phosphoserine phosphatase compare
PP_1231 -3.6 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5128 -3.5 -6.8 Dihydroxy-acid dehydratase compare
PP_1912 -3.5 -7.3 Phosphate acyltransferase compare
PP_1088 -3.5 -9.2 Argininosuccinate synthase compare
PP_0420 -3.4 -8.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -3.3 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1025 -3.3 -10.4 2-isopropylmalate synthase compare
PP_0362 -3.2 -8.4 Biotin synthase compare
PP_4828 -3.1 -2.2 Precorrin-8X methylmutase compare
PP_0365 -3.1 -7.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -3.1 -7.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1022 -3.0 -6.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1826 -3.0 -2.8 Hydrolase, isochorismatase family compare
PP_0363 -3.0 -9.5 8-amino-7-oxononanoate synthase compare
PP_2327 -3.0 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1362 -2.9 -5.2 pyruvate kinase II compare
PP_2328 -2.6 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_5350 -2.6 -4.1 Transcriptional regulator, RpiR family compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_4693 -2.5 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_0364 -2.4 -6.3 pimeloyl-[acp] methyl ester esterase compare
PP_0366 -2.3 -7.1 dethiobiotin synthetase compare
PP_1654 -2.3 -3.7 cysteine synthase B compare
PP_5104 -2.2 -6.8 thiazole synthase compare
PP_4782 -2.1 -3.4 Phosphomethylpyrimidine kinase compare
PP_1783 -2.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4804 -2.0 -3.8 RlpA-like lipoprotein compare
PP_2088 -2.0 -4.0 RNA polymerase sigma factor SigX compare
PP_4902 -1.9 -2.3 Oligoribonuclease compare
PP_3241 -1.8 -1.9 conserved exported protein of unknown function compare
PP_1233 -1.8 -3.6 sulfurtransferase compare
PP_2309 -1.8 -1.8 conserved protein of unknown function compare
PP_4253 -1.7 -2.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0787 -1.7 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_0377 -1.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_0846 -1.7 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_0406 -1.7 -2.8 Nucleotidyltransferase family protein compare
PP_4936 -1.7 -5.5 O-antigen polymerase compare
PP_0291 -1.6 -1.8 conserved protein of unknown function compare
PP_0962 -1.6 -3.1 toluene-tolerance protein compare
PP_1664 -1.6 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1269 -1.6 -1.4 Universal stress protein family compare
PP_0735 -1.6 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_2378 -1.5 -2.5 Fe/S biogenesis protein NfuA compare
PP_0513 -1.5 -2.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1568 -1.5 -1.6 conserved protein of unknown function compare
PP_3417 -1.5 -2.9 D-gluconate transporter compare
PP_5216 -1.5 -1.4 exopolyphosphatase compare
PP_4379 -1.5 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1733 -1.4 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_2747 -1.4 -2.2 conserved protein of unknown function compare
PP_0274 -1.4 -1.5 putative transcriptional regulator containing HTH domain compare
PP_4058 -1.4 -6.3 1,4-alpha-glucan branching enzyme compare
PP_1303 -1.4 -4.9 Sulfate adenylyltransferase subunit 2 compare
PP_4131 -1.4 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_3880 -1.4 -1.7 conserved exported protein of unknown function compare
PP_5217 -1.4 -6.3 Polyphosphate kinase compare
PP_1770 -1.3 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4701 -1.3 -1.1 glucose-6-phosphate isomerase compare
PP_0022 -1.3 -1.2 hypothetical protein compare
PP_4964 -1.3 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_3891 -1.3 -2.6 conserved protein of unknown function compare
PP_1656 -1.3 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4045 -1.3 -2.5 conserved protein of unknown function compare
PP_4785 -1.3 -4.9 conserved exported protein of unknown function compare
PP_5445 -1.2 -1.9 conserved protein of unknown function compare
PP_4938 -1.2 -6.3 putative Glycosyl transferase compare
PP_1011 -1.2 -4.5 glucokinase compare
PP_1552 -1.2 -2.4 putative Phage replication protein compare
PP_4722 -1.2 -3.7 Transcription elongation factor GreA compare
PP_2390 -1.2 -3.1 Transcriptional regulator, LysR family compare
PP_4529 -1.1 -2.4 conserved protein of unknown function compare
PP_5203 -1.1 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4482 -1.1 -2.5 Transcriptional regulator, AraC family compare
PP_0025 -1.1 -1.2 hypothetical protein compare
PP_1304 -1.1 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4480 -1.1 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_4340 -1.1 -2.9 response regulator for chemotactic signal transduction compare
PP_1237 -1.1 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4660 -1.1 -2.4 Transcriptional regulator, LysR family compare
PP_4695 -1.1 -6.0 Sensory box histidine kinase compare
PP_1268 -1.0 -2.7 putative HtrA suppressor protein sohA compare
PP_2337 -1.0 -2.6 aconitate isomerase compare
PP_0122 -1.0 -1.3 conserved exported protein of unknown function compare
PP_2142 -1.0 -1.6 Cell division inhibitor SulA compare
PP_2145 -1.0 -2.2 beta-N-acetylglucosaminidase compare
PP_0232 -1.0 -1.2 ATP-binding taurine transporter subunit compare
PP_4994 -1.0 -3.6 conserved protein of unknown function compare
PP_4797 -1.0 -1.4 conserved protein of unknown function compare
PP_1872 -1.0 -4.3 glutamate-pyruvate aminotransferase compare
PP_1702 -1.0 -2.9 Recombination-associated protein RdgC compare
PP_3637 -1.0 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4271 -1.0 -0.9 conserved protein of unknown function compare
PP_5339 -1.0 -2.4 transcriptional regulator, ornithine utilization compare
PP_4199 -1.0 -1.0 putative Lipoprotein compare
PP_2029 -1.0 -2.3 von Willebrand factor type A domain protein compare
PP_1293 -1.0 -1.7 molybdopterin synthase small subunit compare
PP_3946 -1.0 -1.0 HTH-type transcriptional repressor NicR compare
PP_4263 -1.0 -2.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0794 -0.9 -3.1 1-phosphofructokinase monomer compare
PP_4874 -0.9 -1.1 50S ribosomal protein L9 compare
PP_2402 -0.9 -1.7 putative Sensor histidine kinase compare
PP_0138 -0.9 -5.1 conserved membrane protein of unknown function compare
PP_1348 -0.9 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4925 -0.9 -2.7 conserved protein of unknown function compare
PP_5028 -0.9 -2.0 proline iminopeptidase compare
PP_0872 -0.9 -4.3 Peptide chain release factor 3 compare
PP_4922 -0.9 -5.4 Phosphomethylpyrimidine synthase compare
PP_1553 -0.9 -1.1 conserved protein of unknown function compare
PP_2720 -0.9 -1.2 conserved protein of unknown function compare
PP_0368 -0.9 -5.4 putative Acyl-CoA dehydrogenase compare
PP_1734 -0.9 -2.1 Probable septum site-determining protein MinC compare
PP_4818 -0.9 -1.8 ribosomal protein L11 methyltransferase compare
PP_3258 -0.9 -1.9 conserved protein of unknown function compare
PP_1655 -0.9 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2388 -0.9 -1.7 Transporter, LysE family compare
PP_0725 -0.9 -2.8 conserved hypothetical TPR repeat protein compare
PP_4054 -0.9 -1.0 conserved protein of unknown function compare
PP_1426 -0.9 -4.1 L-aspartate oxidase compare
PP_2002 -0.9 -2.3 putative enzyme compare
PP_4699 -0.9 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4481 -0.9 -3.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0339 -0.8 -0.6 Pyruvate dehydrogenase E1 component compare
PP_4254 -0.8 -1.1 conserved protein of unknown function compare
PP_4829 -0.8 -1.0 putative precorrin-3B synthase compare
PP_5331 -0.8 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4479 -0.8 -2.5 arginine N-succinyltransferase, subunit beta compare
PP_5582 -0.8 -1.1 conserved protein of unknown function compare
PP_3695 -0.8 -4.6 conserved protein of unknown function compare
PP_1214 -0.8 -1.6 putative transcriptional regulatory protein compare
PP_2681 -0.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_4504 -0.8 -1.3 conserved exported protein of unknown function compare
PP_4824 -0.8 -3.1 Sensor histidine kinase/response regulator compare
PP_0393 -0.8 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4120 -0.8 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_5639 -0.8 -3.7 conserved exported protein of unknown function compare
PP_3715 -0.8 -1.4 Muconate cycloisomerase 1 compare
PP_2929 -0.8 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1672 -0.8 -2.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4129 -0.8 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4724 -0.8 -0.5 Carbamoyl-phosphate synthase small chain compare
PP_1353 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_0001 -0.8 -1.2 probable chromosome-partitioning protein compare
PP_2136 -0.8 -2.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2087 -0.8 -2.6 CmpX protein compare
PP_4419 -0.7 -1.8 transposase compare
PP_0958 -0.7 -2.7 phospholipid ABC transporter ATP-binding subunit compare
PP_0978 -0.7 -1.7 conserved protein of unknown function compare
PP_5644 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_5035 -0.7 -3.6 Histidine utilization repressor compare
PP_3930 -0.7 -1.7 conserved exported protein of unknown function compare
PP_1898 -0.7 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PP_1012 -0.7 -2.5 DNA-binding response regulator compare
PP_2878 -0.7 -1.5 conserved protein of unknown function compare
PP_4528 -0.7 -0.8 conserved protein of unknown function compare
PP_0683 -0.7 -2.1 conserved protein of unknown function compare
PP_0003 -0.7 -1.4 16S RNA methyltransferase compare
PP_2417 -0.7 -1.5 putative Iron ABC transporter, permease protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms