Experiment set18IT019 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.4 -1.5 deoxycytidine triphosphate deaminase compare
PS417_22450 -4.0 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_22565 -4.0 -1.3 formyltetrahydrofolate deformylase compare
PS417_24745 -3.4 -4.1 gamma-glutamyl phosphate reductase compare
PS417_23545 -3.3 -2.6 gamma-glutamyl kinase compare
PS417_08125 -3.3 -1.1 prephenate dehydratase compare
PS417_27195 -3.0 -2.0 N-acetylglutamate synthase compare
PS417_27865 -2.9 -3.7 LysR family transcriptional regulator compare
PS417_14065 -2.8 -8.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27315 -2.7 -2.2 hypothetical protein compare
PS417_03260 -2.7 -1.7 5S ribosomal RNA compare
PS417_23025 -2.4 -7.7 murein transglycosylase compare
PS417_21850 -2.4 -1.9 LysR family transcriptional regulator compare
PS417_16490 -2.3 -1.7 cell division protein FtsK compare
PS417_02415 -2.3 -5.7 phosphoserine phosphatase compare
PS417_07470 -2.3 -2.2 hypothetical protein compare
PS417_22445 -2.2 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_27795 -2.2 -1.0 orotate phosphoribosyltransferase compare
PS417_12805 -2.1 -10.4 glycogen branching protein compare
PS417_23775 -2.0 -3.2 exodeoxyribonuclease V subunit beta compare
PS417_04650 -2.0 -0.9 D-alanine--D-alanine ligase compare
PS417_20985 -2.0 -1.3 porin compare
PS417_27640 -2.0 -1.6 TetR family transcriptional regulator compare
PS417_26985 -2.0 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06680 -1.9 -7.2 nuclease PIN compare
PS417_01580 -1.9 -2.1 imidazole glycerol phosphate synthase compare
PS417_00385 -1.8 -1.3 Fur family transcriptional regulator compare
PS417_02975 -1.8 -4.9 3-dehydroquinate dehydratase compare
PS417_20715 -1.7 -2.3 cytochrome Cbb3 compare
PS417_02485 -1.7 -4.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19720 -1.7 -2.1 DNA-binding protein compare
PS417_16005 -1.7 -2.5 ATPase compare
PS417_20785 -1.6 -2.8 transcriptional regulator compare
PS417_04380 -1.6 -1.1 ABC transporter permease compare
PS417_07615 -1.6 -6.9 TetR family transcriptional regulator compare
PS417_08540 -1.6 -2.7 RNA helicase compare
PS417_06145 -1.6 -1.3 hypothetical protein compare
PS417_10720 -1.6 -6.2 chemotaxis protein CheY compare
PS417_12855 -1.6 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03560 -1.6 -1.6 GTP-binding protein compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23915 -1.5 -3.2 pantoate--beta-alanine ligase compare
PS417_27870 -1.5 -3.3 ATP-dependent DNA helicase RecG compare
PS417_19350 -1.5 -3.9 GTP cyclohydrolase compare
PS417_16510 -1.5 -3.9 Clp protease ClpX compare
PS417_02560 -1.5 -2.2 23S rRNA methyltransferase compare
PS417_23390 -1.5 -6.1 ubiquinol oxidase subunit II compare
PS417_26730 -1.5 -0.6 pyrroline-5-carboxylate reductase compare
PS417_07140 -1.4 -4.7 peptidase M48 compare
PS417_27595 -1.4 -2.4 recombinase XerC compare
PS417_26695 -1.4 -1.7 uracil phosphoribosyltransferase compare
PS417_01915 -1.4 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06200 -1.4 -3.8 protein-PII uridylyltransferase compare
PS417_16370 -1.4 -6.9 chemotaxis protein CheY compare
PS417_07170 -1.4 -5.0 hypothetical protein compare
PS417_20160 -1.4 -3.5 cysteine synthase compare
PS417_27300 -1.4 -1.0 cell division protein ZapA compare
PS417_27800 -1.4 -2.4 exodeoxyribonuclease III compare
PS417_02555 -1.4 -8.5 exoribonuclease R compare
PS417_22840 -1.4 -1.9 tRNA-Met compare
PS417_04305 -1.4 -1.6 aspartate ammonia-lyase compare
PS417_00180 -1.4 -2.5 tryptophan synthase subunit alpha compare
PS417_01565 -1.4 -5.7 imidazole glycerol phosphate synthase compare
PS417_25765 -1.3 -2.0 transcriptional regulator compare
PS417_01850 -1.3 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_08135 -1.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24155 -1.3 -0.9 ATP-binding protein compare
PS417_23805 -1.3 -2.7 acetolactate synthase 3 regulatory subunit compare
PS417_10245 -1.3 -1.6 hypothetical protein compare
PS417_21575 -1.3 -5.4 chemotaxis protein compare
PS417_23385 -1.3 -7.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_07560 -1.3 -1.2 universal stress protein UspA compare
PS417_23810 -1.3 -8.0 acetolactate synthase 3 catalytic subunit compare
PS417_19955 -1.3 -0.9 hypothetical protein compare
PS417_15100 -1.3 -2.6 BatB protein compare
PS417_05815 -1.3 -3.1 recombinase RecA compare
PS417_02005 -1.2 -6.9 glutamate synthase compare
PS417_06945 -1.2 -0.9 membrane protein compare
PS417_24710 -1.2 -5.4 lipoprotein compare
PS417_02225 -1.2 -3.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06835 -1.2 -2.2 phospholipase compare
PS417_15540 -1.2 -1.5 NUDIX hydrolase compare
PS417_02000 -1.1 -7.6 glutamate synthase compare
PS417_19665 -1.1 -3.4 flagellar motor protein MotD compare
PS417_03815 -1.1 -2.1 DNA transporter compare
PS417_06205 -1.1 -5.8 methionine aminopeptidase compare
PS417_20855 -1.1 -1.3 hypothetical protein compare
PS417_04390 -1.1 -2.6 toluene tolerance protein compare
PS417_08155 -1.1 -1.1 integration host factor subunit beta compare
PS417_07165 -1.1 -4.8 dihydrodipicolinate synthase compare
PS417_16555 -1.1 -1.2 cupin compare
PS417_22300 -1.1 -1.5 LTXXQ domain protein compare
PS417_27425 -1.1 -4.2 exopolyphosphatase compare
PS417_27075 -1.1 -2.7 thiol-disulfide isomerase compare
PS417_21760 -1.1 -1.7 hypothetical protein compare
PS417_24585 -1.0 -6.9 AMP nucleosidase compare
PS417_00510 -1.0 -1.1 membrane protein compare
PS417_27245 -1.0 -2.5 aminotransferase DegT compare
PS417_28265 -1.0 -1.4 pyridoxamine kinase compare
PS417_09035 -1.0 -2.4 hypothetical protein compare
PS417_08945 -1.0 -4.8 heat shock protein 90 compare
PS417_19825 -1.0 -7.2 ATPase AAA compare
PS417_01635 -1.0 -4.5 nitrogen regulation protein NR(I) compare
PS417_26645 -1.0 -2.4 chemotaxis protein compare
PS417_08250 -1.0 -2.2 competence protein ComEA compare
PS417_23370 -1.0 -2.5 protoheme IX farnesyltransferase compare
PS417_01575 -1.0 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_17305 -1.0 -1.5 hypothetical protein compare
PS417_18545 -1.0 -2.2 cell division protein compare
PS417_05785 -1.0 -2.9 tail protein compare
PS417_24705 -1.0 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_18560 -0.9 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_28070 -0.9 -5.9 phosphate ABC transporter ATP-binding protein compare
PS417_20775 -0.9 -3.3 coproporphyrinogen III oxidase compare
PS417_21480 -0.9 -1.1 23S rRNA pseudouridylate synthase compare
PS417_21210 -0.9 -2.1 amidotransferase compare
PS417_10220 -0.9 -2.0 hypothetical protein compare
PS417_04420 -0.9 -5.6 histidinol dehydrogenase compare
PS417_27605 -0.9 -2.6 hypothetical protein compare
PS417_28515 -0.9 -2.9 16S rRNA methyltransferase compare
PS417_15085 -0.9 -2.7 ATPase AAA compare
PS417_04275 -0.9 -6.3 hypothetical protein compare
PS417_25390 -0.9 -3.4 MFS transporter compare
PS417_04595 -0.9 -1.6 cell division protein MraZ compare
PS417_12405 -0.9 -2.7 DNA-binding protein compare
PS417_07620 -0.9 -1.7 beta-hexosaminidase compare
PS417_15465 -0.9 -2.6 carboxynorspermidine decarboxylase compare
PS417_08580 -0.9 -3.9 histidine kinase compare
PS417_00185 -0.9 -2.5 tryptophan synthase subunit beta compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_01790 -0.9 -4.4 glucan biosynthesis protein G compare
PS417_12695 -0.9 -3.5 mannitol dehydrogenase compare
PS417_19835 -0.9 -1.0 flagellar biosynthesis protein FliS compare
PS417_27040 -0.9 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_17830 -0.8 -1.8 4-hydroxyphenylacetate isomerase compare
PS417_01795 -0.8 -5.9 glucosyltransferase MdoH compare
PS417_20700 -0.8 -4.1 cbb3-type cytochrome c oxidase subunit I compare
PS417_02805 -0.8 -1.0 urease subunit gamma compare
PS417_16715 -0.8 -1.4 DoxX family protein compare
PS417_22990 -0.8 -0.9 iron dicitrate transport regulator FecR compare
PS417_21680 -0.8 -1.9 succinylglutamate desuccinylase compare
PS417_23820 -0.8 -1.6 hypothetical protein compare
PS417_14200 -0.8 -2.4 hypothetical protein compare
PS417_23910 -0.8 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_12310 -0.8 -3.6 methionine synthase compare
PS417_28080 -0.8 -5.8 phosphate ABC transporter permease compare
PS417_18445 -0.8 -1.6 glycerol-3-phosphatase compare
PS417_28230 -0.8 -1.4 transcriptional regulator compare
PS417_19830 -0.8 -2.9 flagellar assembly protein FliT compare
PS417_01855 -0.8 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_03300 -0.8 -1.7 alanine acetyltransferase compare
PS417_22410 -0.8 -3.0 hypothetical protein compare
PS417_23380 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_21630 -0.8 -1.4 magnesium transporter compare
PS417_08420 -0.8 -2.1 lipoprotein compare
PS417_18090 -0.8 -2.5 iron ABC transporter compare
PS417_05160 -0.8 -0.7 DNA polymerase III subunit chi compare
PS417_07710 -0.8 -3.0 membrane protein compare
PS417_00155 -0.8 -2.2 2-dehydro-3-deoxygalactonokinase compare
PS417_28220 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_26240 -0.8 -1.4 N-methylproline demethylase compare
PS417_06770 -0.8 -3.7 multidrug transporter compare
PS417_26530 -0.7 -1.0 hypothetical protein compare
PS417_15110 -0.7 -3.1 protein BatD compare
PS417_04435 -0.7 -4.9 uracil phosphoribosyltransferase compare
PS417_19690 -0.7 -2.7 histidine kinase compare
PS417_12375 -0.7 -1.9 serine/threonine protein phosphatase compare
PS417_00085 -0.7 -0.8 16S rRNA methyltransferase compare
PS417_12795 -0.7 -4.7 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_18455 -0.7 -1.6 hypothetical protein compare
PS417_15105 -0.7 -2.7 membrane protein compare
PS417_23105 -0.7 -1.0 hypothetical protein compare
PS417_03685 -0.7 -1.3 FAD-dependent oxidoreductase compare
PS417_22535 -0.7 -3.0 ornithine acetyltransferase compare
PS417_18715 -0.7 -5.3 peptidase M4 compare
PS417_17805 -0.7 -1.7 microcin B17 processing protein McbC compare
PS417_18590 -0.7 -2.7 SAM-dependent methyltransferase compare
PS417_09235 -0.7 -0.7 molecular chaperone compare
PS417_12940 -0.7 -2.4 sugar ABC transporter substrate-binding protein compare
PS417_22050 -0.7 -2.7 ribonuclease BN compare
PS417_06895 -0.7 -1.4 DNA-binding protein compare
PS417_18710 -0.7 -3.1 hypothetical protein compare
PS417_17980 -0.7 -1.2 ABC transporter permease compare
PS417_24895 -0.7 -1.0 hypothetical protein compare
PS417_00345 -0.7 -1.1 copper-binding protein compare
PS417_23135 -0.7 -1.1 GTP-binding protein compare
PS417_06540 -0.7 -0.8 membrane protein compare
PS417_11360 -0.7 -2.3 energy transducer TonB compare
PS417_16990 -0.7 -2.9 acyl-CoA dehydrogenase compare
PS417_23250 -0.7 -2.3 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_19860 -0.7 -5.0 flagellar hook protein FlgL compare
PS417_19850 -0.7 -3.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08410 -0.7 -1.2 hypothetical protein compare
PS417_17545 -0.7 -2.6 2-oxoisovalerate dehydrogenase compare
PS417_19095 -0.7 -1.2 hypothetical protein compare
PS417_27515 -0.7 -1.7 heme biosynthesis protein HemY compare
PS417_18720 -0.7 -3.3 endonuclease compare
PS417_17240 -0.7 -1.2 trigger factor compare
PS417_21035 -0.7 -3.6 multidrug transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms