Experiment set18IT019 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_25

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -5.7 -7.0 Indole-3-glycerol phosphate synthase compare
PP_1988 -5.7 -10.9 3-isopropylmalate dehydrogenase compare
PP_0083 -5.7 -6.7 tryptophan synthase beta chain compare
PP_0967 -5.5 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -5.5 -7.5 tryptophan synthase alpha chain compare
PP_4679 -5.3 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.3 -13.9 Histidinol dehydrogenase compare
PP_5347 -5.2 -13.4 pyruvate carboxylase subunit A compare
PP_0289 -5.1 -10.8 Imidazoleglycerol-phosphate dehydratase compare
PP_2370 -5.1 -4.9 conserved protein of unknown function compare
PP_1986 -5.0 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_5098 -4.9 -10.1 methionine biosynthesis protein MetW compare
PP_2168 -4.8 -12.1 Transaldolase compare
PP_1985 -4.6 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_4678 -4.5 -14.3 Ketol-acid reductoisomerase compare
PP_0290 -4.5 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.5 -7.5 phosphoserine phosphatase compare
PP_1995 -4.5 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -4.4 -14.8 homoserine O-acetyltransferase compare
PP_4890 -4.4 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5348 -4.4 -9.9 Transcriptional regulator, LysR family compare
PP_3511 -4.3 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_3999 -4.2 -9.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0417 -4.2 -16.1 Anthranilate synthase component 1 compare
PP_1088 -4.2 -14.0 Argininosuccinate synthase compare
PP_4680 -4.1 -13.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -4.1 -7.3 Nitrogen regulation protein NR(I) compare
PP_0965 -4.1 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2371 -4.1 -7.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0184 -4.0 -9.0 Argininosuccinate lyase compare
PP_1079 -4.0 -7.7 Ornithine carbamoyltransferase compare
PP_0420 -4.0 -10.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -3.9 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2327 -3.9 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5014 -3.8 -5.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1231 -3.8 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2402 -3.8 -3.6 putative Sensor histidine kinase compare
PP_1362 -3.7 -5.5 pyruvate kinase II compare
PP_1654 -3.6 -3.5 cysteine synthase B compare
PP_5155 -3.4 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -3.4 -7.2 Anthranilate phosphoribosyltransferase compare
PP_2328 -3.4 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_5346 -3.4 -7.5 pyruvate carboxylase subunit B compare
PP_1025 -3.4 -9.8 2-isopropylmalate synthase compare
PP_5128 -3.2 -8.0 Dihydroxy-acid dehydratase compare
PP_0292 -3.2 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4804 -3.2 -4.8 RlpA-like lipoprotein compare
PP_2001 -3.1 -8.9 O-succinylhomoserine sulfhydrylase compare
PP_5303 -2.8 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0362 -2.8 -10.2 Biotin synthase compare
PP_0364 -2.8 -6.3 pimeloyl-[acp] methyl ester esterase compare
PP_4984 -2.7 -8.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4700 -2.7 -1.8 pantothenate synthetase compare
PP_5289 -2.7 -5.5 Acetylglutamate kinase compare
PP_5015 -2.7 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1912 -2.5 -6.3 Phosphate acyltransferase compare
PP_0366 -2.5 -7.0 dethiobiotin synthetase compare
PP_0363 -2.4 -10.9 8-amino-7-oxononanoate synthase compare
PP_5104 -2.2 -8.8 thiazole synthase compare
PP_1022 -2.2 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4701 -2.2 -1.7 glucose-6-phosphate isomerase compare
PP_1233 -2.1 -4.4 sulfurtransferase compare
PP_0164 -2.1 -7.0 conserved protein of unknown function compare
PP_4828 -2.0 -2.4 Precorrin-8X methylmutase compare
PP_4964 -2.0 -4.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0735 -2.0 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4782 -2.0 -5.4 Phosphomethylpyrimidine kinase compare
PP_2378 -2.0 -3.7 Fe/S biogenesis protein NfuA compare
PP_2388 -1.9 -5.1 Transporter, LysE family compare
PP_5350 -1.8 -4.4 Transcriptional regulator, RpiR family compare
PP_4943 -1.8 -3.3 putative Glycosyl transferase compare
PP_5095 -1.8 -1.6 pyrroline-5-carboxylate reductase compare
PP_4379 -1.8 -3.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4126 -1.7 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0365 -1.6 -5.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5216 -1.6 -1.5 exopolyphosphatase compare
PP_4058 -1.5 -6.4 1,4-alpha-glucan branching enzyme compare
PP_1303 -1.5 -6.3 Sulfate adenylyltransferase subunit 2 compare
PP_1898 -1.5 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4785 -1.5 -5.9 conserved exported protein of unknown function compare
PP_5217 -1.5 -7.5 Polyphosphate kinase compare
PP_1656 -1.4 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4480 -1.4 -7.0 arginine N-succinyltransferase, subunit alpha compare
PP_3417 -1.4 -4.2 D-gluconate transporter compare
PP_5313 -1.4 -1.9 DNA-binding protein HU-alpha compare
PP_3649 -1.4 -3.5 Transcriptional regulator, GntR family compare
PP_0291 -1.4 -1.2 conserved protein of unknown function compare
PP_4238 -1.4 -4.0 conserved protein of unknown function compare
PP_0833 -1.4 -1.7 queuine tRNA-ribosyltransferase compare
PP_4936 -1.4 -4.9 O-antigen polymerase compare
PP_0393 -1.3 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4699 -1.3 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1011 -1.3 -6.1 glucokinase compare
PP_4693 -1.3 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_1553 -1.3 -1.5 conserved protein of unknown function compare
PP_1304 -1.3 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2302 -1.3 -4.5 DNA-binding, ATP-dependent protease compare
PP_1348 -1.2 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0959 -1.2 -1.2 phospholipid ABC transporter compare
PP_4922 -1.2 -5.8 Phosphomethylpyrimidine synthase compare
PP_1655 -1.2 -2.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5331 -1.2 -3.5 Long-chain acyl-CoA thioester hydrolase compare
PP_3035 -1.2 -2.7 conserved protein of unknown function compare
PP_0787 -1.2 -3.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2136 -1.1 -3.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4938 -1.1 -5.8 putative Glycosyl transferase compare
PP_1217 -1.1 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1872 -1.1 -5.5 glutamate-pyruvate aminotransferase compare
PP_0122 -1.1 -2.2 conserved exported protein of unknown function compare
PP_0406 -1.1 -2.4 Nucleotidyltransferase family protein compare
PP_1778 -1.1 -5.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1009 -1.1 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1381 -1.1 -1.4 4-carboxymuconolactone decarboxylase compare
PP_2390 -1.1 -4.0 Transcriptional regulator, LysR family compare
PP_1261 -1.1 -1.9 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2773 -1.0 -2.1 conserved protein of unknown function compare
PP_4098 -1.0 -1.8 UvrABC system protein C compare
PP_1426 -1.0 -5.9 L-aspartate oxidase compare
PP_1355 -1.0 -6.0 Muropeptide permease AmpG compare
PP_5639 -1.0 -4.9 conserved exported protein of unknown function compare
PP_3359 -1.0 -3.0 putative Hydroxycinnamic acid degradation regulator compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_0872 -1.0 -4.0 Peptide chain release factor 3 compare
PP_0547 -1.0 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1099 -0.9 -1.9 Cold shock protein CapB compare
PP_1548 -0.9 -1.8 conserved protein of unknown function compare
PP_0368 -0.9 -6.1 putative Acyl-CoA dehydrogenase compare
PP_5248 -0.9 -1.5 putative hydrolase compare
PP_1346 -0.9 -3.1 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_2032 -0.9 -3.6 putative ATPase compare
PP_5600 -0.9 -2.4 conserved protein of unknown function compare
PP_1664 -0.9 -1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_4952 -0.9 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1683 -0.9 -2.4 Transcriptional regulator, MarR family compare
PP_0377 -0.9 -1.9 coenzyme PQQ synthesis protein D compare
PP_4124 -0.9 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_3880 -0.8 -1.4 conserved exported protein of unknown function compare
PP_1493 -0.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5203 -0.8 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4288 -0.8 -3.3 ureidoglycolate lyase compare
PP_3808 -0.8 -1.2 Antibiotic synthesis protein MbtH compare
PP_5659 -0.8 -2.1 protein of unknown function compare
PP_4695 -0.8 -4.9 Sensory box histidine kinase compare
PP_2459 -0.8 -1.7 ribose pyranase compare
PP_1017 -0.8 -3.9 mannose/glucose ABC transporter, permease protein compare
PP_4994 -0.8 -3.5 conserved protein of unknown function compare
PP_5017 -0.8 -1.0 Sec-independent protein translocase protein TatB compare
PP_5508 -0.8 -1.1 conserved protein of unknown function compare
PP_3924 -0.8 -1.8 conserved protein of unknown function compare
PP_5320 -0.8 -4.2 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_5321 -0.8 -3.9 two-component system sensory histidine kinase conserved
PP_3637 -0.8 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5448 -0.8 -1.8 conserved protein of unknown function compare
PP_4546 -0.8 -2.4 ATP-dependent helicase HrpA compare
PP_1739 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_4824 -0.7 -3.2 Sensor histidine kinase/response regulator compare
PP_5507 -0.7 -1.6 protein of unknown function compare
PP_5230 -0.7 -1.8 Tyrosine recombinase XerC compare
PP_0254 -0.7 -2.4 conserved protein of unknown function compare
PP_0138 -0.7 -4.4 conserved membrane protein of unknown function compare
PP_5001 -0.7 -1.2 protease HslVU, ATPase component compare
PP_0962 -0.7 -1.3 toluene-tolerance protein compare
PP_4941 -0.7 -2.6 conserved exported protein of unknown function compare
PP_3102 -0.7 -1.8 conserved protein of unknown function compare
PP_0725 -0.7 -2.1 conserved hypothetical TPR repeat protein compare
PP_5644 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_5140 -0.7 -2.0 Transcriptional regulator, MerR family compare
PP_0961 -0.7 -3.4 toluene tolerance protein compare
PP_t10 -0.7 -0.9 tRNA-Pro compare
PP_0789 -0.7 -2.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1018 -0.7 -3.6 mannose/glucose ABC transporter - ATP binding subunit compare
PP_4102 -0.7 -3.0 conserved protein of unknown function compare
PP_2442 -0.7 -1.0 conserved protein of unknown function, DUF480 family compare
PP_2820 -0.7 -1.1 HTH-type transcriptional regulator nfxB compare
PP_2256 -0.7 -2.0 Transcriptional regulator, Cro/CI family compare
PP_3052 -0.7 -1.0 conserved protein of unknown function compare
PP_3411 -0.7 -0.9 conserved protein of unknown function compare
PP_5227 -0.7 -3.2 diaminopimelate decarboxylase compare
PP_2821 -0.7 -2.2 conserved exported protein of unknown function compare
PP_3695 -0.7 -3.8 conserved protein of unknown function compare
PP_2668 -0.7 -1.4 ABC efflux transporter, ATP-binding protein compare
PP_2030 -0.7 -2.5 conserved protein of unknown function compare
PP_4797 -0.7 -1.1 conserved protein of unknown function compare
PP_4560 -0.7 -1.5 putative Ribonuclease BN compare
PP_0509 -0.7 -1.6 conserved protein of unknown function compare
PP_2253 -0.7 -2.0 Transcriptional regulator, GntR family compare
PP_3790 -0.7 -3.9 diaminopimelate epimerase compare
PP_4392 -0.7 -3.8 chemotaxis protein methyltransferase compare
PP_1860 -0.7 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_5487 -0.6 -2.3 conserved protein of unknown function compare
PP_1979 -0.6 -2.1 putative Hydrolase compare
PP_1733 -0.6 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1672 -0.6 -2.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3603 -0.6 -2.5 Transcriptional regulator, GntR family compare
PP_0513 -0.6 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0261 -0.6 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5090 -0.6 -1.7 putative cell division protein compare
PP_0258 -0.6 -2.4 regulator of murein cross-linking compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms